BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19080.1
Length=1722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318665 jgi|Araly1|318665|fgenesh1_pm.C_scaffold_3001681 2202 0.0
Ahg474089 jgi|Araly1|474089|fgenesh2_kg.1__4043__AT1G49520.1 593 1e-168
> Ahg318665 jgi|Araly1|318665|fgenesh1_pm.C_scaffold_3001681
Length=1392
Score = 2202 bits (1192), Expect = 0.0
Identities = 1330/1396 (95%), Gaps = 11/1396 (1%)
Strand=Plus/Plus
Query 153 ATGGTTTCCGACTTGGACCTCGTGACCCGACTCCGTGAGATTCTCGGTAGCTCCGACCTG 212
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTTCCGACTTGGACCTCGTGACCCGACTCCGTGAGATTCTCGGTAGCTCCGACCTA 60
Query 213 AACACGGCGACTCCGGCAAGCGTCCGTCGTCAGTTGGAGGCGGATTTCGGTGTGGACTTG 272
||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 61 AACACGGCGACTCCGGCTAGCGTCCGTCGTCAGCTGGAGGCAGATTTCGGTGTCGACTTG 120
Query 273 ACAGATAAAAAA-GCGTATATTAGGGATCAAATCGATACTTTTCTCGAGAGCAATGGCGC 331
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAGATAAAAAAGGC-TATATTAGGGATCAAATCGATACTTTTCTCGAGAGCAATGGCGC 179
Query 332 GGTAGAAGACAAACCTGAGAGTC-CCAAGGTAGAAGAATACATTAATGCCGACGAAATCA 390
|||||||||||||||||||| | | ||| ||||||| |||||||||||||||||||||
Sbjct 180 TGTAGAAGACAAACCTGAGAG-CTCTAAGCCAGAAGAAGACATTAATGCCGACGAAATCA 238
Query 391 AGGCGGAAATTGAAGGAGGCGATGGAGAAGACCTCGACGGAGATGGAAGTGGAAGTGAGG 450
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 239 AGGCGGAAATTGAAGGAGGCGATGGAGAAGACCTCGACGGAGATGGAAGTGAAAGTGAGG 298
Query 451 AAGAGAAGGAAGAACGGCCAGTAAAGGCCAAGAAGCGAGGTGGTGGCATTACCAAAGTAT 510
|||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 299 AAGAGAAGGAGGAACGGCCAGTAAAGGCCAAGAAACGAGGTGGTGGCTTTACCAAAGTAT 358
Query 511 CTCAGTTATCTCCACAACTTGAGAAAGTTGTTGGAGCATCTCAGTTAGGTCGAACCGAGG 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTCAGTTATCTCCACAACTTGAGAAAGTTGTTGGAGCATCTCAGTTAGGTCGAACCGAGG 418
Query 571 TTGTGAAGAAAATGTGGGCATATATCCGAGAGAAGGATTTGCAAGACCCAAAGGATAGGA 630
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 419 TTGTGAAGAAAATGTGGGCCTATATCCGAGAGAACGATTTGCAAGACCCAAAGGACAGGA 478
Query 631 GGAAGATAGTGTGTGACGAGTTGTTGCATTCCTTGTTCCGTGTTAAGACCATTAATATGT 690
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 479 GGAAGATAGTGTGTGACGAGTTGCTGCATTCCTTGTTCCGTGTAAAGACCATTAATATGT 538
Query 691 TTCAAATGAACAAGGCATTAACCAAGCATATTTGGCCCTTAGGTGATGGAGATGGGTGTG 750
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCAAATGAGCAAGGCATTAACCAAGCATATTTGGCCCTTAGGTGATGGAGATGGGTGTG 598
Query 751 CTAACGATGTGAAAGAAGAAGATGAAGATGAGGCATCagagggaacagataagaaagggg 810
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 599 CTAACAATGTGAAAGAAGAAGATGAAGAGGAGGCATCAGAGGGAACAGATAAGAAAAGGG 658
Query 811 agcagagcgaagaagtggaagagaataaggaagaagaaagtgaagagcaggaagTTAGGA 870
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 AGCAAAGCGAAGAAGTGGAAGAGAATAAGGAAGAAGAAAGTGAAGAGGAGGAAGTTAGGA 718
Query 871 GTTTGCGGAAACGCAAGAGAAAAAAGCCAGCCAAGTCGGTAGAGAAGCCCAAGAGAAAAG 930
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 719 GTTTGCGGAAACGCAAGAGAAAAAAGCCTGCCAAGTCGGTAGAGAAGCCCAAAAGAAAAG 778
Query 931 GAGGAGGCGGCTTTGCTAAAGTTTGCAGCCTCTCGCCAGAGCTTCAGGCGTTTACTGGGG 990
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 779 GAGGAGGTGGCTTTGCTAAAGTTTGCAGCCTCTCGCCGGAGCTTCAGGCATTTACTGGGG 838
Query 991 TGACAGAATTAGCCAGGACAGAGGTTGTGAAATTGCTTTGGAAGTACATAAAGGAGAACA 1050
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 839 TGACAGAATTAGCCAGGACCGAGGTTGTGAAAATGCTTTGGAAGTACATAAAGGAGAACA 898
Query 1051 ATTTACAAGATCCGAATGATAAACGCTCT-ATAATATGCGACGAATCATTTCGATCTCTG 1109
|||| ||||||||||||||||||||| | |||||||||||||||||||| |||||| |
Sbjct 899 ATTTGCAAGATCCGAATGATAAACGC-ATAATAATATGCGACGAATCATTGCGATCTTTA 957
Query 1110 TTCCCTGTCGAGTCCATCAATATGTTTCAAATGAATAAACAGCTAACAAAGCACATATGG 1169
|||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 958 TTCCCTTTCGAGTCCATCAATATGTTTCAAATGAGTAAACTGCTAACAAAGCACATATGG 1017
Query 1170 CCTTTAGAGGATAATGCAGGAGAATCAGTTAGCTCTAAGTCTCCAAAGAATGGAAAGCAA 1229
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1018 CCTTTAGAGGATAATGCAGGAGAATCAGTTAGCTCTAACTCTCCAAAGAATGGAAAGCAA 1077
Query 1230 AAAATGGAATCAGATGGAGATAGTGAGGAACCAAATGAGAAAGATAAAAAGCAGAAGAAA 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AAAATGGAATCAGATGGAGATAGTGAGGAACCAAATGAGAAAGATAAAAAGCAGAAGAAA 1137
Query 1290 GAAGTTCTTGCTCCCCTTCCACTTTCAGATGCTCTTGTCAAGTTCTTGGGTGAT---GGA 1346
|||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 1138 GAAGTTCTTGCTCCCCTTCCACTTTCAGTTGCTCTTGTCAAGTTCTTGGGTAATAATGGA 1197
Query 1347 GAAAACTCGCTGTCGAGGGCGGATGTGGTAAAGAGATTGTGGGAGTACATAAATCATAAT 1406
|||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1198 GAAAGCTCGCTGTCAAGGGCGGATGTGGTAAAGAGATTGTGGGAGTACATAAAACAGAAT 1257
Query 1407 GATCTTCAGGATCCTTCTGACAAGAGGAGAGTCATATGCGATGAGAAGCTGAAAGAACTC 1466
||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 1258 GATCTTCAGGATCCTTCTGACAAGAAGAGAATCATATGTGATGAGAAGCTGAAAGAACTC 1317
Query 1467 TTTGAAGTTGATTCATTCGAAGACACATCAGT-CTCAAAACTTCTGACCAACCACTTCAT 1525
|| |||||||||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 1318 TTCAAAGTTGATTCATTCGAAGACACGTC-GTTCTCAACACTTCTGACCAACCACTTCAC 1376
Query 1526 CAAGGCCGAACAATGA 1541
||||||||||||||||
Sbjct 1377 CAAGGCCGAACAATGA 1392
> Ahg474089 jgi|Araly1|474089|fgenesh2_kg.1__4043__AT1G49520.1
Length=1261
Score = 593 bits (321), Expect = 1e-168
Identities = 626/768 (82%), Gaps = 41/768 (5%)
Strand=Plus/Plus
Query 431 AGATGGAAGTGGAAGTGAGGAAGAGAAGGA-AGAACGGCCAGTAAAGGCCAAGAAGCGAG 489
||| ||||||| || || || || || || |||| || |||||||| ||||| || |
Sbjct 262 AGAAGGAAGTGAAAACGATGATGATAA-GACCGAACCACCGGTAAAGGCTAAGAAACGTG 320
Query 490 GTGGTGGCATTACCAAAGTATCTCAG-TTATCTCCACAACTTGAGAAAGTTGTT-GGAGC 547
| ||||| ||| |||| | | |||| || ||||||||||| ||| ||||| || ||| |
Sbjct 321 GAGGTGGGTTTAACAAAATTTGTCAGCTT-TCTCCACAACTAGAG-AAGTTTTTAGGAAC 378
Query 548 ATCTCAGTTAGG-TCGAACCGAGGTTGTGAAGAAAATGTGGGCATATATCCGAGAGAAGG 606
|||||||| || |||||| |||||||||||||||||||||||||||||| ||||| | |
Sbjct 379 TTCTCAGTT-GGCTCGAACAGAGGTTGTGAAGAAAATGTGGGCATATATCAGAGAGCACG 437
Query 607 ATTTGCAAGACCCAAAGGATAGGAGGAAGATAGTGTGTGACGAGTT-G-TTGCATTCCTT 664
|||||||||| |||||| ||||| |||| ||| | || ||||| || | || ||||| ||
Sbjct 438 ATTTGCAAGATCCAAAGAATAGGCGGAATATATTATGCGACGA-TTCGCTT-CATTCGTT 495
Query 665 GTTCCGTGTTAAGACCATTAATATGTTTCAAATGAACAAGGCATTAACCAAGCATATTTG 724
|| ||||| ||||| ||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 496 ATTTCGTGTAAAGACAATTGATATGTTTCAAATGAACAAGGCATTGGCAAAGCATATTTG 555
Query 725 GCC-CTTAGGTGATGGAGATGGGTGTGCTAACGA-TGTGAAAGAAGAAGATGAAGATGAG 782
||| || | ||||||| ||||||||| ||| || |||||||| |||||||||||||||
Sbjct 556 GCCGCTAAA-TGATGGACATGGGTGTGTTAA-GAATGTGAAAGGGGAAGATGAAGATGAG 613
Query 783 GCATCagagggaacagata--agaaagggg-agcagagcgaagaagtggaagagaataag 839
|||||| ||||| ||||| |||||| || | | | |||||||| || |||||||||
Sbjct 614 ACATCAG-GGGAA-AGATATGAGAAAGAGGTAAAA-ATCGAAGAAGCGGTAGAGAATAAT 670
Query 840 gaagaagaaagtgaaga-gcaggaagTTAGGAGTTTGCGGAAACGCAA--G-A-GAAAA- 893
||||||| ||||| ||| | |||||| | | ||| | || |||||||| | | |||||
Sbjct 671 GAAGAAGTAAGTGGAGAAG-AGGAAGATCGTAGTGTCCGAAAACGCAAACGCAAGAAAAG 729
Query 894 AAG-CCAGCCAAGTCGGTAG-AGAAGCCCAAGAGAAAAGGAGGAGGCGGCTTTGCTAAAG 951
|| ||||||||||| | || |||| || |||| |||| ||||||||||||| | ||||
Sbjct 730 AAAACCAGCCAAGTCCG-AGGAGAAACCGAAGA-AAAA--AGGAGGCGGCTTTACCAAAG 785
Query 952 TTTGCAGCCTCTCGCCAGAGCTTCAGGCGTTTACTGGGGTGACAGAATTAGCCAGGACAG 1011
||||||| || || ||||| |||||||| |||||||| | | | ||||| || ||||
Sbjct 786 TTTGCAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGGCTCAGTTAGCTAGAACAG 845
Query 1012 AGGTTGTGA-AATTGCTTTGGAAGTACATAAAGGAGAACAATTTACAAGATCCGA--ATG 1068
||||||||| ||| ||||||||| |||||||||||||||||||| |||||||| | | |
Sbjct 846 AGGTTGTGAGAAT-GCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCC-ATCA-G 902
Query 1069 ATAAACGCTCTATAATATGCGACGAATCATTTCGATCTCTGTTCCCTGTCGAGTCCATCA 1128
|||||||| | ||||||||||| |||||||| || |||||||||||||| ||||| ||||
Sbjct 903 ATAAACGCACAATAATATGCGATGAATCATTACGGTCTCTGTTCCCTGTTGAGTCTATCA 962
Query 1129 ATATGTTTCAAATGAATAAACAGCTAACAAAGCACATATGGCCTTTAG 1176
|||||||||||||||| ||||| ||||| |||||||| |||||| |||
Sbjct 963 ATATGTTTCAAATGAACAAACAACTAACCAAGCACATTTGGCCTCTAG 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64601055520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5