BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19100.1
Length=2320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929797 jgi|Araly1|929797|scaffold_302254.1 3057 0.0
Ahg952604 jgi|Araly1|952604|scaffold_93900001.1 2139 0.0
Ahg474093 jgi|Araly1|474093|fgenesh2_kg.1__4047__AT1G49580.1 1594 0.0
Ahg486115 jgi|Araly1|486115|fgenesh2_kg.5__2107__AT3G56760.1 379 4e-104
> Ahg929797 jgi|Araly1|929797|scaffold_302254.1
Length=1853
Score = 3057 bits (1655), Expect = 0.0
Identities = 1784/1847 (97%), Gaps = 6/1847 (0%)
Strand=Plus/Plus
Query 178 agaagaagaagaagaaggagaagGATATATGGGAGGCTGTACTTCCAAACCTTCCTCCTC 237
||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 4 AGAAGAAGAAGAAGAAGAAGAAGGA-CTATGGGAGGATGTACTTCCAAACCCTCCTCCTC 62
Query 238 CGTCAAACCTAATCCTTACGCACCCAAAGACGCGGTTC-TCCAAAATGACGATTCTACCC 296
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 63 CGTCAAACCTAATCCTTACGCACCCAAAGACGCGGTTCTTCC-AAATGACGATTCTACCC 121
Query 297 CTGCTCATCCCGGGAAATCACCGGTTCGTTCATCTCCCGCCGTAAAGGCCTCTCCTTTTT 356
|||| |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 122 CTGCCCATCCCGGGAAATCACCGGTTCCTTCTTCTCCCGCCGTAAAGGCTTCTCCTTTTT 181
Query 357 TCCCTTTTTACACGCCTAGTCCCGCCCGGCACCGCCGTAACAAGAGCCGCGACGGCGGAG 416
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 182 TCCCATTTTACACGCCTAGTCCCGCTCGGCACCGCCGTAACAAGAGCCGTGACGGAGGAG 241
Query 417 GA--GG-AGAGAGTAAGAGCGTTACCAGCACTCCTCTCCGTCAGCTCGCGCGTGCTTTCC 473
|| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 242 GAGGGGTAGAGAGTAAGAGCGTTACCAGCACTCCGCTCCGTCAGCTCGCGCGTGCTTTCC 301
Query 474 ACCCTCCGTCACCGGCGAGACATATACGGGATGTTCTGCGGCggaggaaggagaagaagg 533
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ACCCTCCTTCACCGGCGAAACATATACGGGATGTTCTGCGGCGGAGGAAGGAGAAGAAGG 361
Query 534 aggctgctctgccggcggcgaggcagcagaaggaggaggaggagagggaAGAGGTAGGGC 593
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 362 AGGCTGCTCTGCCGGCGACGAGGCAGCAGACGGAGGAGGAGGAGAGGGAAGAGGTAGGGC 421
Query 594 TGGATAAAAGATTTGGGTTTTCCAAGGAGTTACAGAGTAGGATTGAGCTAGGGGAAGAGA 653
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 422 TGGATAAAAGATTTGGGTTCTCGAAGGAGTTACATAGTAGGATTGAGCTAGGGGAAGAGA 481
Query 654 TTGGGAGAGGGCATTTTGGGTATACTTGCTCTGCTAAGTTCAAGAAAGGAGAGCTCAAAG 713
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 482 TTGGGCGAGGGCATTTTGGGTACACTTGCTCTGCTAAGTTCAAGAAAGGAGAGCTCAAAG 541
Query 714 ATCAGGAGGTTGCTGTTAAAGTCATCCCAAAATCTAAGATGACATCTGCAATATCTATAG 773
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 ATCACGAGGTTGCTGTTAAAGTCATCCCAAAATCTAAGATGACATCTGCAATATCTATAG 601
Query 774 AGGATGTGAGAAGAGAAGTGAAAATACTGCGGGCGTTATCTGGACATCAAAATTTGGTAC 833
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 602 AGGATGTGAGAAGAGAAGTGAAAATACTGCGGGTGTTATCTGGACATCAAAATTTGGTAC 661
Query 834 AATTCTATGATGCGTTCGAGGACAATGCCAACGTTTACATCGTTATGGAGTTATGTGGAG 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AATTCTATGATGCGTTCGAGGACAATGCCAACGTTTACATCGTTATGGAGTTATGTGGAG 721
Query 894 GTGGTGAACTTCTTGACAGGATACTAGCAAGGGGAGGAAAATACTCTGAAGATGATGCAA 953
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GTGGTGAACTACTTGACAGGATACTAGCAAGGGGAGGAAAATACTCTGAAGATGATGCAA 781
Query 954 AAGCAGTGCTTATACAGATCCTTAACGTCGTAGCTTTCTGTCATCTCCAAGGAGTTGTTC 1013
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 782 AAGCAGTGCTTATACAGATCCTTAACGTTGTAGCTTTCTGTCATCTCCAAGGAGTTGTTC 841
Query 1014 ATCGAGATCTAAAACCAGAGAACTTCTTGTACACTTCCAAGGAGGAGAATTCTATGTTGA 1073
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 842 ATCGAGATCTAAAACCAGAGAACTTCTTGTACACTTCCAAGGAGGAAAATTCTCTGTTGA 901
Query 1074 AAGTCATAGATTTTGGCTTATCGGACTTTGTCAGACCAGACGAAAGACTAAATGATATAG 1133
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 902 AAGTCATAGATTTTGGCTTATCGGATTTTGTCAGACCAGACGAAAGATTAAATGACATAG 961
Query 1134 TGGGAAGTGCATATTACGTAGCCCCTGAAGTTCTACACAGATCTTATACCACAGAAGCGG 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 962 TGGGAAGTGCATATTACGTAGCCCCTGAAGTTCTACACAGATCTTATACCACGGAAGCGG 1021
Query 1194 ATGTATGGAGCATAGGAGTCATAGCATACATTCTCCTATGTGGAAGCCGTCCTTTTTGGG 1253
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 ATGTATGGAGCATAGGAGTAATAGCATACATTCTCCTATGTGGAAGCCGTCCTTTTTGGG 1081
Query 1254 CAAGAACTGAATCAGGAATTTTCAGAGCAGTTCTAAAAGCTGATCCCAGTTTTGATGAAC 1313
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1082 CAAGAACTGAATCAGGAATTTTCAGAGCAGTTCTAAAAGCTGATCCGAGTTTTGATGAAC 1141
Query 1314 CTCCTTGGCCTTCGTTATCCTTTGAGGCAAAAGATTTTGTTAAGAGATTATTGTACAAGG 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CTCCTTGGCCTTCGTTATCCTTTGAGGCAAAAGATTTTGTTAAGAGATTATTGTACAAGG 1201
Query 1374 ACCCTCGGAAAAGAATGACTGCATCTCAAGCTTTGATGCATCCTTGGATCGCGGGTTATA 1433
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 1202 ACCCTCGGAAAAGAATGACGGCCTCTCAAGCTTTGATGCATCCTTGGATTGCGGGTTATA 1261
Query 1434 AGAAAATAGATATCCCATTTGATATTCTGATCTTCAAGCAGATCAAAGCATACTTGAGAT 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 AGAAAATAGATATCCCATTTGATATTCTGATCTTCAAGCAGATCAAAGCATACTTGAGAT 1321
Query 1494 CTTCGTCTTTGCGCAAAGCTGCTTTGATGGCTCTGTCCAAGACATTAACTACCGATGAAC 1553
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1322 CTTCGTCTTTGCGCAAAGCTGCTTTGATGGCTCTGTCCAAGACATTAATTACCGATGAAC 1381
Query 1554 TTCTTTATCTGAAAGCGCAGTTTGCACACTTAGCACCCAACAAAAATGGCCTCATCACTT 1613
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1382 TTCTTTATCTGAAAGCGCAGTTTGCACTCTTAGCACCCAACAATAATGGCCTCATCACTT 1441
Query 1614 TAGATAGCATCAGACTGGCACTTGCGACAAATGCAACAGAAGCAATGAAGGAATCACGGA 1673
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1442 TAGATAGCATCAGACTGGCACTTGCTACAAATGCAACAGAAGCAATGAAGGAATCACGGA 1501
Query 1674 TCCCGGACTTTCTTGCATTGTTAAATGGACTTCAATACAAAGGGATGGATTTTGAAGAGT 1733
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 TCCCGGACTTTCTTGCGTTGTTAAATGGACTTCAATACAAAGGGATGGATTTTGAAGAGT 1561
Query 1734 TTTGTGCAGCTTCCATTAGCGTTCATCAGCATGAGTCTCTTGATTGTTGGGAGCAGAGCA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 TTTGTGCAGCTTCCATTAGCGTTCATCAGCATGAGTCTCTTGATTGTTGGGAGCAGAGCA 1621
Query 1794 TTCGTCATGCTTATGAGCTATTTGAAATGAATGGAAACCGAGTTATCGTCATCGAAGAAC 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 TTCGTCATGCTTATGAGCTATTTGAAATGAATGGAAACCGAGTTATCGTCATCGAAGAAC 1681
Query 1854 TCGCTTCTGAACTTGGTGTTGGATCATCCATCCCGGTTCATACCATTCTAAATGACTGGA 1913
||||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||
Sbjct 1682 TCGCTTCCGAACTTGGTGTTGGATCATCGATCCCGGTCCATACCATTCTACATGACTGGA 1741
Query 1914 TAAGACATACTGACGGGAAGCTGAGTTTCTTGGGTTTTGTCAAACTGCTGCACGGTGTCT 1973
||||||| || || ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1742 TAAGACACACAGATGGGAAGCTGAGTTTCTTGGGTTTTGTCAAACTGTTGCACGGTGTCT 1801
Query 1974 CGACTCGACAATCTTTAGCGAAAACGCGATGAGGAAAGTGACTCGGT 2020
| ||| ||||| | ||||||||||| |||||| |||||| |||||||
Sbjct 1802 CTACTAGACAACCATTAGCGAAAACACGATGAAGAAAGTAACTCGGT 1848
> Ahg952604 jgi|Araly1|952604|scaffold_93900001.1
Length=1295
Score = 2139 bits (1158), Expect = 0.0
Identities = 1237/1276 (97%), Gaps = 1/1276 (0%)
Strand=Plus/Plus
Query 750 AGATGACATCTGCAATATCTATAGAGGATGTGAGAAGAGAAGTGAAAATACTGCGGGCGT 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 AGATGACATCTGCAATATCTATAGAGGATGTGAGAAGAGAAGTGAAAATACTGCGGGCGT 79
Query 810 TATCTGGACATCAAAATTTGGTACAATTCTATGATGCGTTCGAGGACAATGCCAACGTTT 869
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 80 TATCTGGACATCAAAATTTGGTACAATTCTACGATGCGTTCGAGGACAATGCCAACGTTT 139
Query 870 ACATCGTTATGGAGTTATGTGGAGGTGGTGAACTTCTTGACAGGATACTAGCAAGGGGAG 929
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 140 ACATCGTTATGGAGTTATGTGGAGGTGGTGAACTCCTTGACAGGATACTAGCAAGGGGAG 199
Query 930 GAAAATACTCTGAAGATGATGCAAAAGCAGTGCTTATACAGATCCTTAACGTCGTAGCTT 989
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 200 GAAAATACTCTGAAGATGATGCAAAAGCAGTGCTTATACAGATCCTTAACGTTGTAGCTT 259
Query 990 TCTGTCATCTCCAAGGAGTTGTTCATCGAGATCTAAAACCAGAGAACTTCTTGTACACTT 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TCTGTCATCTCCAAGGAGTTGTTCATCGAGATCTAAAACCAGAGAACTTCTTGTACACTT 319
Query 1050 CCAAGGAGGAGAATTCTATGTTGAAAGTCATAGATTTTGGCTTATCGGACTTTGTCAGAC 1109
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 320 CCAAGGAGGAGAATTCTCTGTTGAAAGTCATAGATTTTGGCTTATCGGATTTTGTCAGAC 379
Query 1110 CAGACGAAAGACTAAATGATATAGTGGGAAGTGCATATTACGTAGCCCCTGAAGTTCTAC 1169
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CAGACGAAAGATTAAATGACATAGTGGGAAGTGCATATTACGTAGCCCCTGAAGTTCTAC 439
Query 1170 ACAGATCTTATACCACAGAAGCGGATGTATGGAGCATAGGAGTCATAGCATACATTCTCC 1229
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 440 ACAGATCTTATACCACAGAAGCGGATGTATGGAGCATAGGAGTAATAGCATACGTTCTCC 499
Query 1230 TATGTGGAAGCCGTCCTTTTTGGGCAAGAACTGAATCAGGAATTTTCAGAGCAGTTCTAA 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TATGTGGAAGCCGTCCTTTTTGGGCAAGAACTGAATCAGGAATTTTCAGAGCAGTTCTAA 559
Query 1290 AAGCTGATCCCAGTTTTGATGAACCTCCTTGGCCTTCGTTATCCTTTGAGGCAAAAGATT 1349
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 AAGCTGATCCGAGTTTTGATGAACCTCCTTGGCCTTCGTTATCCTTTGAGGCAAAAGATT 619
Query 1350 TTGTTAAGAGATTATTGTACAAGGACCCTCGGAAAAGAATGACTGCATCTCAAGCTTTGA 1409
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 620 TTGTTAAGAGATTATTGTACAAGGACCCTCGGAAAAGAATGACAGCCTCTCAAGCTTTGA 679
Query 1410 TGCATCCTTGGATCGCGGGTTATAAGAAAATAGATATCCCATTTGATATTCTGATCTTCA 1469
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 680 TGCATCCTTGGATCGCGGGTTATAAGAAAATAGATATCCCATTTGATATTCTAATCTTCA 739
Query 1470 AGCAGATCAAAGCATACTTGAGATCTTCGTCTTTGCGCAAAGCTGCTTTGATGGCTCTGT 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 AGCAGATCAAAGCATACTTGAGATCTTCGTCTTTGCGCAAAGCTGCTTTGATGGCTCTGT 799
Query 1530 CCAAGACATTAACTACCGATGAACTTCTTTATCTGAAAGCGCAGTTTGCACACTTAGCAC 1589
|||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 800 CCAAGACATTAATTACCAATGAACTTCTTTATCTGAAAGCGCAGTTTGCACTCTTAGCAC 859
Query 1590 CCAACAAAAATGGCCTCATCACTTTAGATAGCATCAGACTGGCACTTGCGACAAATGCAA 1649
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 860 CCAACAAAAATGGCCTCATCACTTTAGATAGCATCAAACTGGCACTTGCTACAAATGCAA 919
Query 1650 CAGAAGCAATGAAGGAATCACGGATCCCGGACTTTCTTGCATTGTTAAATGGACTTCAAT 1709
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 920 CAGAAGCAATGAAGGAATCACGGATCCCGGACTTTCTTGCGTTGTTAAATGGACTCCAAT 979
Query 1710 ACAAAGGGATGGATTTTGAAGAGTTTTGTGCAGCTTCCATTAGCGTTCATCAGCATGAGT 1769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 ACAAAGGGATGGATTTTGAAGAGTTTTGTGCAGCTTCCATTAGCGTTCATCAGCATGAGT 1039
Query 1770 CTCTTGATTGTTGGGAGCAGAGCATTCGTCATGCTTATGAGCTATTTGAAATGAATGGAA 1829
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1040 CTCTTGATTGTTGGGAGCAGAGCATTCGTCATGCTTATGAACTATTCGAAATGAATGGAA 1099
Query 1830 ACCGAGTTATCGTCATCGAAGAACTCGCTTCTGAACTTGGTGTTGGATCATCCATCCCGG 1889
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1100 ACCGAGTTATCGTCATTGAAGAGCTCGCTTCTGAACTTGGTGTTGGATCATCTATCCCGG 1159
Query 1890 TTCATACCATTCTAAATGACTGGATAAGACATACTGACGGGAAGCTGAGTTTCTTGGGTT 1949
| |||||||||||| |||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1160 TCCATACCATTCTACATGACTGGATAAGACACACAGATGGGAAGCTGAGTTTCTTGGGTT 1219
Query 1950 TTGTCAAACTGCTGCACGGTGTCTCGACTCGACAATCTTTAGCGAAAACGCGATGAGGAA 2009
||||||||||| ||||||||||||| ||| ||||| | ||||||||||| |||||| |||
Sbjct 1220 TTGTCAAACTGTTGCACGGTGTCTCTACTAGACAACCATTAGCGAAAACACGATGAAGAA 1279
Query 2010 AGTGACTC-GGTGTTA 2024
||| |||| |||||||
Sbjct 1280 AGTTACTCAGGTGTTA 1295
> Ahg474093 jgi|Araly1|474093|fgenesh2_kg.1__4047__AT1G49580.1
Length=2138
Score = 1594 bits (863), Expect = 0.0
Identities = 1528/1836 (83%), Gaps = 98/1836 (5%)
Strand=Plus/Plus
Query 201 GATATATGGGAGGCTGTACTTCCAAA-CCTTC-C-TCCTCCGTCAAACCTAATCCTTACG 257
||| ||||||||||||||| |||||| ||| | | ||||||| || |||||| |||| ||
Sbjct 130 GAT-TATGGGAGGCTGTACCTCCAAACCCTCCACTTCCTCCGGCAGACCTAACCCTTTCG 188
Query 258 CACC---CAAAGACGCGGTTCTCCAAAATGACGATTCTACCCCTG-CTCATCCCGGGAAA 313
| || ||| || | | || |||| |||||||| | |||||| | |||||||| |||
Sbjct 189 CTCCTGGCAATGA--CTATCCT-CAAATTGACGATTTTGCCCCTGAC-CATCCCGGTAAA 244
Query 314 TCACCGGTTCGTTCATCTCCCGCCGTAAAGGCCTCTCCTTT-TTTCCCTTTTTACACGCC 372
||||| ||| | | || |||||| |||| |||||||||| |||||| |||||||||||
Sbjct 245 TCACCACTTCCTACCCCTTCCGCCGCAAAGTCCTCTCCTTTCTTTCCC-TTTTACACGCC 303
Query 373 TAGTCCC-GCCCGGCACCGCCGTAACAAGAGCCGCGA---CGGC------GGAGGAGGAG 422
|| ||| || || ||||||||||| ||||||||||| |||| ||||||||||
Sbjct 304 GAG-CCCTGCTCGCCACCGCCGTAATAAGAGCCGCGACGTCGGCGGAGGAGGAGGAGGAG 362
Query 423 AGAGTAAGAGCGTT-ACCAGCACTCCTCTCCGTCAGCT-CGCGCGTGC-TTTCCACCCTC 479
||||||||||| || || ||||| || || ||||| | ||| ||||| ||| |||||||
Sbjct 363 AGAGTAAGAGC-TTGACTAGCACGCCGCTTCGTCAATTACGC-CGTGCGTTT-CACCCTC 419
Query 480 CGTCACCGGCGAGACATATACGGGATGTTCTGCGGCggaggaaggagaagaaggaggctg 539
|||| ||||||| ||| ||||||| | || ||||||||||||| ||| ||||| ||||
Sbjct 420 CGTCTCCGGCGAAACACATACGGGCGGCGCTACGGCGGAGGAAGGGGAAAAAGGAAGCTG 479
Query 540 ctctgccggcggcgaggcagcagaagga-ggag-----g-ag-gaga-g-ggaAGAGG-- 587
|| | ||||||||| ||||| || || |||| | | | || | ||||||||
Sbjct 480 CTTTATCGGCGGCGACGCAGC-TAACGACGGAGATCCCGCCGCGGGAGGAGGAAGAGGAA 538
Query 588 -TAGGGCTGGATAAAAGATTTGGGTTTTCCAAGGAGTTACAGAGTAGGA-TTGAGCTAGG 645
| ||||| || ||||||||||| ||||| || ||||| || |||| || | || ||||
Sbjct 539 TTGGGGCTTGACAAAAGATTTGGTTTTTCTAAAGAGTTTCACAGTA-GAGTAGAATTAGG 597
Query 646 GGAAGAGATTGGGA-GAGGGCATTTTGGGTATACTTGCTCTGCTAAG-TTCAAGAAAGGA 703
|||||||||| ||| |||||||||||||||| |||||||||||| || ||||||||||||
Sbjct 598 GGAAGAGATT-GGACGAGGGCATTTTGGGTACACTTGCTCTGCT-AGATTCAAGAAAGGA 655
Query 704 GAGCTCAAAGATCAGGA-GGTTGCTGTTAAAGTCATCCCAAAATCTAAGATGACATCTGC 762
|||||||||| ||| | ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 656 GAGCTCAAAGGTCA-AATGGTTGCTGTTAAAATCATCCCAAAATCTAAGATGACAACTGC 714
Query 763 AATAT-CTATAGAGGATGTGAGAAGAGAAGTGAAAATACTGCGGGCGTTATCTGGACATC 821
||| | ||||||| ||||||||||| ||||||||||| || | ||| ||||||||||||
Sbjct 715 AAT-TGCTATAGAAGATGTGAGAAGGGAAGTGAAAATTCTACAGGCTTTATCTGGACAT- 772
Query 822 AA-AATTTGGTACAATTCTATGATGCGTTCGAGGACAATGCCAACGTTTACATCGTTATG 880
|| ||| |||| |||||||||||||| || ||||||||||| || || ||||| | |||
Sbjct 773 AAGAATCTGGTTCAATTCTATGATGCATTTGAGGACAATGCAAATGTCTACATTGCGATG 832
Query 881 GAGTTATGTGGAGGTGGTGAACTTCTTGACAGGATACTAGCAAGGGGAGGAAAATACTCT 940
|||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 833 GAGTTATGTGAAGGTGGTGAACTTCTGGACAGAATACTAGCAAGGGGAGGGAAATACTC- 891
Query 941 GAAG-ATGATGCAAAAGCAGTGCTTATACAGATCCTTAACGTCGTAGCTTTCTGTCATCT 999
| || ||||||||||| ||||| ||||||| ||||| | || |||||||| ||||||||
Sbjct 892 GGAGAATGATGCAAAACCAGTGATTATACAAATCCTGCATGTGGTAGCTTTTTGTCATCT 951
Query 1000 CCAAGGAGTTGTTCATCGAGATCTAAAACCAGAGAACTTCTTGTACACTTCCAAGGAGGA 1059
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 952 CCAAGGAGTTGTTCATCGAGACCTTAAACCAGAGAACTTCTTGTACACTTCCAAGGAGGA 1011
Query 1060 GAATTCT-ATG-TTGAAAGTC-ATAGATTTTGGCTTATCGGACTTTGTCAGACCAGACGA 1116
||||||| | | || |||| | ||||| ||||||||||| ||||||||||||||||| ||
Sbjct 1012 GAATTCTCA-GCTT-AAAG-CGATAGACTTTGGCTTATCAGACTTTGTCAGACCAGATGA 1068
Query 1117 AAGACTAAATGATATAGTGGGAAGTGCATATTACGTAGCCCCTGAAGTTCTACACAGATC 1176
|||||| || |||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct 1069 AAGACTCAACGATATAGTAGGAAGTGCGTACTACGTAGCTCCTGAAGTTCTACACAGATC 1128
Query 1177 TTATACCACAGAAGCGGATGTATGGAGCATAGGAGTCATAGCATACATTCTCCTATGTGG 1236
||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 1129 ATATACAACAGAAGCGGATGTGTGGAGCATCGGAGTCATAGCATACATTCTACTATGTGG 1188
Query 1237 AAGCCGTCCTTTTTGGGCAAGAACTGAATCAGGAATTTTCAGAGCAGTTCTAAAAGCTGA 1296
|||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1189 TAGCCGTCCGTTTTGGGCAAGAACTGAATCCGGAATTTTCAGAGCGGTTCTTAAAGCTGA 1248
Query 1297 TCCC-AGTTTTGATGAACCTCCTTGGCC-TTCGTTATCCTT-TGAGGCAAAAGATTTTGT 1353
||| ||||| ||||||||||||||||| ||| || || || ||| || ||||| |||||
Sbjct 1249 -CCCGAGTTTCGATGAACCTCCTTGGCCCTTC-TTGTC-TTCTGACGCTAAAGACTTTGT 1305
Query 1354 TAAGAGATTATTGTACAAGGA-CCCTCGGAAAAGAATGACTGCATCTCAAGCTTTGATGC 1412
|||| | ||||||| ||||| ||| |||| ||||||| | || || ||||| |||||||
Sbjct 1306 TAAGCGGTTATTGTTTAAGGATCCC-CGGAGAAGAATGTCAGCCTCCCAAGCCTTGATGC 1364
Query 1413 ATCCTTGGATCGCG-GGTTATAAGAA--A-ATAGA-TATCCCATTT-GATATTCT-GATC 1465
||||||||||| || |||||||| | | || || |||||| ||| ||||| || ||||
Sbjct 1365 ATCCTTGGATC-CGAGGTTATAATACGGACAT-GAATATCCC-TTTCGATAT-CTTGATC 1420
Query 1466 TTCAAGCAGATCAAAGCATACTTGAGATCTTCGTCTTTGCGCAAAGCTGCTTTGATGGCT 1525
|| | |||||| || || |||||| ||||||| || || |||||||||||||||| |||
Sbjct 1421 TTTAGGCAGATGAAGGCGTACTTGCGATCTTCTTCATTACGCAAAGCTGCTTTGAGGGCG 1480
Query 1526 CTGTCCAAGACATTAA-CTACCGATGAACTTCTTTATCTGAAAGCGCAGTTTGCACA-CT 1583
||||||||||| |||| | | |||||| ||||||| |||||| | || ||| | | ||
Sbjct 1481 CTGTCCAAGACGTTAATCAAG-GATGAAATTCTTTACCTGAAAACTCAATTTTCTCTTCT 1539
Query 1584 TAGCACCCAACAAAAATGGCCTCATCACTTTAGATAGCATCAGACTGGCACTTGCGA-CA 1642
||||| |||||| ||||||| ||||| | |||| ||| ||| |||||||||| | ||
Sbjct 1540 C-GCACCAAACAAAGATGGCCTAATCACAATGGATACCATTAGATTGGCACTTGCAAGCA 1598
Query 1643 AATGCAACAGAAGCAATGAAGGAATCACGGATCCCGGACTTTCTTGCATTGTTAAATGGA 1702
| |||||||||||||||||| ||||| |||||||| || ||||| || ||| ||||||||
Sbjct 1599 A-TGCAACAGAAGCAATGAAAGAATCTCGGATCCCAGAGTTTCTCGCTTTGCTAAATGGA 1657
Query 1703 CTTCAATACAAAGGGATGGATTTTGAAGAGTTTTGTGCAGCTTCCATTAGCGTTCATCAG 1762
|| ||||||| ||| |||||||| |||||||||||||||||| |||| | ||||||||||
Sbjct 1658 CTGCAATACAGAGGAATGGATTTCGAAGAGTTTTGTGCAGCTGCCATAAACGTTCATCAG 1717
Query 1763 CATGAGTCTCTTGATTGTTGGGAGCAGAGCATTCGTCATGCTTATGAGCTATTT-GA-AA 1820
|| ||||| |||||||||||||| ||||||||||| |||||||||||||| ||| || ||
Sbjct 1718 CACGAGTCGCTTGATTGTTGGGAACAGAGCATTCGACATGCTTATGAGCT-TTTCGACAA 1776
Query 1821 TGAATGGAAACCGAGTTATCGTCATCGAAGAACTCGCTTCTGAACTTGGTGTTGGATCAT 1880
|||||||||||||| ||| ||||| |||||||| || |||||||||||||||||| |||
Sbjct 1777 -GAATGGAAACCGAGCTATTGTCATTGAAGAACTTGCCTCTGAACTTGGTGTTGGACCAT 1835
Query 1881 CCAT-CCCGGTTCATACCATTCTAAATGACTGGATAAGACATACTGACGGGAAGCTGAGT 1939
| || |||| | ||| | ||||| |||| ||||| ||||| ||||| |||||||| ||
Sbjct 1836 CTATACCCG-TACATTCGGTTCTACATGATTGGATCAGACACACTGATGGGAAGCTAAGC 1894
Query 1940 TTCTT-GGGTTTTGTCAAACTGCTGCACGGTGTCTC 1974
||||| |||||| || |||||| | || || |||||
Sbjct 1895 TTCTTCGGGTTT-GTTAAACTGTTACATGGAGTCTC 1929
> Ahg486115 jgi|Araly1|486115|fgenesh2_kg.5__2107__AT3G56760.1
Length=1813
Score = 379 bits (205), Expect = 4e-104
Identities = 990/1355 (73%), Gaps = 110/1355 (8%)
Strand=Plus/Plus
Query 660 GAGGGCATTTTGGGTATACTTGCTCTGCTAAGTTCAAGAAAGGAGAGCTC-AAAGATCAG 718
|||||||||||||||||||||||||||||||| || ||||| |||| |||| |||
Sbjct 395 GAGGGCATTTTGGGTATACTTGCTCTGCTAAGGGGAAAAAAGGT-AGCTTGAAAGGTCAA 453
Query 719 GAGGTTGCTGTTAAAGTCAT-CCCAAAATCTAAGATGAC-ATCTGCAATAT-CTATAGAG 775
|| || ||||| ||||| || |||||| || |||||||| | | ||||| | | || |||
Sbjct 454 GATGTGGCTGTCAAAGTTATTCCCAAA-TCCAAGATGACTA-CGGCAAT-TGCAATTGAG 510
Query 776 GATGTGAGAAGAGAAGTGAAAATACTGCGGGCGTT-ATCTGGACATCAA-AATTTGGTAC 833
||||| |||||||||||||| ||| ||||||| || | |||| || ||| || | || |
Sbjct 511 GATGTTAGAAGAGAAGTGAAGATATTGCGGGCTTTGA-CTGGTCA-CAAGAACCTAGTCC 568
Query 834 AATTCTATGATGCGTTCGAGGACAATGCCAACGTTTACATCGTTATGGAGTTATGTGGAG 893
| |||||||| || ||||| || ||| || |||||||| || ||||||||||| ||
Sbjct 569 AGTTCTATGACGCCTTCGAAGATGATGAAAATGTTTACATTGTGATGGAGTTATGCCAAG 628
Query 894 GTGGTGAACTTCTTG-ACAGGATACTAGCAA-GGGGAGGAAAATACTCTGAAG-ATGATG 950
| ||||||||| ||| ||| |||||| ||| ||||||| |||||||| |||| | ||||
Sbjct 629 GCGGTGAACTT-TTGGACAAGATACTT-CAAAGGGGAGGCAAATACTCAGAAGTA-GATG 685
Query 951 C-AAAAGCAGTGCTTATACAGATCCTTAACGTCGTAGCTTTCTGTCATCTCCAAGGAGTT 1009
| |||| ||| | | ||||| |||| || ||||| | ||||||||| ||||| ||
Sbjct 686 CTAAAAA-AGTAATGGTTCAGATTCTTAGTGTAGTAGCCTACTGTCATCTTCAAGGCGTG 744
Query 1010 GTTCATCGAGATCTAAAACCAGAGAACTT-CT-TGTACACTTCCAAGGAGGAGAATTCTA 1067
|||||||| || || ||||||||||| || || | | |||| | ||||| ||| ||||
Sbjct 745 GTTCATCGTGACCTCAAACCAGAGAATTTTCTCT-T-CACTACAAAGGATGAGTCTTCTC 802
Query 1068 -TGTTGAAAGTCATAGATTTTGG-CTTATCGGACTTTGTCAGACCAGACGAAAGACTAAA 1125
| | ||||| ||| |||||||| || || |||| |||||| ||||| || || | ||
Sbjct 803 CTCT-GAAAGCCATTGATTTTGGTCTC-TCTGACTATGTCAGGCCAGATGAGAGGTTGAA 860
Query 1126 TGATATAGTGGGAAGTGCATATTACGTAGCCCCTGAAGTTCTACACAG-ATCTTATACCA 1184
||| || || |||||||| |||||||| |||||||||||| ||||| | | | ||| |
Sbjct 861 TGACATTGTAGGAAGTGCTTATTACGTGGCCCCTGAAGTTTTACACCGTA-CATATGGAA 919
Query 1185 CAGAAGCGGATGTATGGAGCATAGGAGTCATAGCATACATTCTCCTATGTGGAAGCCGTC 1244
| || || ||| | ||||| || ||||| || || || || || || ||||| ||||| |
Sbjct 920 CTGAGGCAGATATGTGGAGTATTGGAGTGATTGCTTATATACTTCTCTGTGGTAGCCGGC 979
Query 1245 CTTTTTGGGCAAGAACTGAATCAGGAATTTTCAGAGCAGTTCTAAAAGCTGATCCCAGTT 1304
| |||||||| | ||||||| ||||| ||| |||| ||||| ||||| || |||| ||
Sbjct 980 CATTTTGGGCCCGTTCTGAATCTGGAATCTTCCGAGCTGTTCTTAAAGCAGAACCCAATT 1039
Query 1305 TTGATGAACCTCCTTGGCCTTCG-TTATC-CTTTGAGGCAAAAGATTTTGTTAAGA-GAT 1361
| || ||| |||||||||| || || || | | || || ||||||||| || | | |
Sbjct 1040 TCGAAGAAGCTCCTTGGCCATCTATT-TCACCT-GACGCTGTAGATTTTGTGAA-ACGTT 1096
Query 1362 TATTGTACAAGGACC-CTCGGAAAAGAATGACTGCAT-CTCAAGCTTTGATGC-ATCCTT 1418
| || | || || | || || ||| | ||||| | | || |||||| ||| ||||||
Sbjct 1097 TGTTAAATAAAGATTAC-CGTAAGAGACTAACTGC-TGCACAGGCTTTG-TGCCATCCTT 1153
Query 1419 GGATCGCGGGTTATAA-GAA--AATAGATATCCCATTTGATATTCTGATCTT-CAAGCA- 1473
|| | | || | | ||| || ||||| || || |||||| | || || |||||
Sbjct 1154 GGCTTGTTGGCTCGCATGAATTAA-AGATA-CC-ATCTGATATGATCAT-TTACAAGCTT 1209
Query 1474 GATCAAAGCATACTTGA-GATCTTCGTCTTTGCGCAAAGCTGCTTT-GATGGCTCT-GTC 1530
| | |||| |||| | | | || ||||||||| | ||| | ||||| | |||||| | |
Sbjct 1210 G-TAAAAGTATACATAATG-TCGTCGTCTTTGAGAAAATCGGCTTTAGC-GGCTCTTG-C 1265
Query 1531 CAAGACATTAAC--TACCG-ATGAACTT-CTTTATCTGAAAGCGCAGTTTGCA-CACTTA 1585
||| || ||||| ||||| | | || ||| || || ||| ||||||| | | |||
Sbjct 1266 CAAAACTTTAACAGTACCGCA-G--CTGACTT-ATTTGCAAGAGCAGTTTA-ATCTGTTA 1320
Query 1586 GCACCCAACAAAAATGGCCTCATCACTTTAGAT--AGCAT--CAGA-CTGGC-A-CTTGC 1638
| ||| | |||||| || | || | | | ||| || || || | | | | | ||||
Sbjct 1321 GGACCGAGCAAAAACGGA-T-AT-A-TCTCGATGCAGAATTACAAAACAG-CTATCTTGA 1375
Query 1639 GACAAATGCAACAGAAGCAATGAAGGAATCACG-GATCCCGGACTTTCTTG-CATTG-TT 1695
| | | || ||||||| | ||||| ||||| | || ||| ||| | ||| | ||
Sbjct 1376 -AGAGCTCCA-CAGAAGCTACAAAGGATTCACGAG-TCTTGGATTTTGTACACAT-GATT 1431
Query 1696 AAATGGACTTCAATACAAAGGGA-TGGATTTTGAAGAGTTTTGTGCAGCTTC--CATTA- 1751
| || ||||| ||||| | | | || |||||||||||||| | ||||| | |||
Sbjct 1432 AGTTGT-CTTCAGTACAA-GAAACTAGACTTTGAAGAGTTTTG--C-GCTTCAGCTTTAA 1486
Query 1752 GCGTTCATCAGC-ATGA-GTCTCTTGATTGTTGGGAGCAGAGCATTC--GTCATGCTTAT 1807
| ||| |||||| | || | | | || ||||||||| | ||| | | ||||| |||
Sbjct 1487 GTGTTTATCAGCTA-GAAG-CAATGGAAACTTGGGAGCA-A-CATGCACGCCATGCATAT 1542
Query 1808 GAGCTATTTGA-AATGAATGGAAACCGAGTTATCGTCATCGAAGAACTCGCTTCTGAACT 1866
||| | ||||| || || ||| ||| |||| || | ||||||||||| || | |||||
Sbjct 1543 GAGTTGTTTGAGAAGGA-TGGGAACAGAGTCATTATGATCGAAGAACTTGCCACGGAACT 1601
Query 1867 TGGTGTTGGATC-ATCCATCCCGGTTCATACCATTCTA-AATGACTGGATAAGACATACT 1924
|| | || || ||| | || ||||| |||| || || |||||||||||| ||
Sbjct 1602 CGGACTCGG-TCCATCGGTGCCTGTTCAGGTTGTTCTTCAA-GATTGGATAAGACATTCT 1659
Query 1925 GACGGGAAGCTGAGTTTCTTGGGTTTTGTCAAACT 1959
|| |||||||| ||||||||||||||||||| |||
Sbjct 1660 GATGGGAAGCTAAGTTTCTTGGGTTTTGTCAGACT 1694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87379022030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5