BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19120.1 Length=1648 Score E Sequences producing significant alignments: (Bits) Value Ahg952605 jgi|Araly1|952605|scaffold_93900002.1 926 0.0 > Ahg952605 jgi|Araly1|952605|scaffold_93900002.1 Length=553 Score = 926 bits (501), Expect = 0.0 Identities = 537/554 (97%), Gaps = 3/554 (1%) Strand=Plus/Plus Query 850 ACGTTTGTGTGAAAGCTCCAGGTGGAGAAGACGACTCTTCTCATTTCAGAGATAGTCTTC 909 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACGTTTGTGTGAAAGCTCCAGGTGGAGAAGACGACTCTTCTCATTTCAGAGATAGTCTTC 60 Query 910 TATATAAGAGGCTTACTTCAGGAGACATTGTTTGGGAGAAAGTTATCAATATTAGAGGTC 969 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTATAAGAGGCTTACTTCAGGAGACATTGTTTGGGAGAAAGTTATCAATATTAGAGGTC 120 Query 970 ACCATGTGAGACCATACATTGTTGGAGATTGGTGTTATCCTCTTCTCTCATTCCTGATGA 1029 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 121 ATCATGTGAGACCATACATTGTTGGAGATTGGTGTTACCCTCTTCTCTCATTCCTGATGA 180 Query 1030 CTCCATTTTCACCAAATGGCTCTGGTACGCCACCGGAGAATCTATTCGATGGAATGTTGA 1089 |||| ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| Sbjct 181 CTCCCTTTTCACCAAATGGCTCTGGTTCGCCGCCGGAGAATCTATTCGACGGAATGTTGA 240 Query 1090 TGAAAGGAAGGTCAGTGGTGGTGGAAGCTATTGGATTGCTCAAGGCTAGATGGAAGATTC 1149 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGAAAGGAAGGTCAGTTGTGGTGGAAGCTATTGGATTGCTCAAGGCTAGATGGAAGATTC 300 Query 1150 TTCAGAGTTTGAATGTTGGTGTGAACCATGCTCCTCAGACTATTGTGGCTTGTTGTGTGT 1209 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTCAAAGTTTGAATGTTGGAGTGAACCATGCTCCTCAGACTATTGTGGCTTGTTGTGTGT 360 Query 1210 TGCATAATCTTTGTCAGATTGCTAGAGAACCTGAACCGGAGATTTGGAAGGATCCAGATG 1269 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 361 TGCATAATCTTTGTCAGATTGCTAGAGAACCCGAACCGGAGATTTGGAAGGATCCGGATG 420 Query 1270 AAGCTGGAACGCCTGCAAGAGTTTTGGAGAGTGAGAGGCAGTTTTACTATTACGGGGAGA 1329 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 421 AAGCTGGAACGCCTGCAAGAGTATTGGAGAGTGAGAGGCAGTTTTACTATTACGGGGAGA 480 Query 1330 GTTTGAGGCAAGCATTGGCAGAAGATTTACACCAGAGACTCTCCTCGAGGTAAAAGACAT 1389 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 481 GTTTGAGGCAAGCATTGGCAGAAGATTTGCACCAGAGACTCTCCTCGAGGTAAA-GACAT 539 Query 1390 GA-A-CAGATCTTG 1401 || | ||||||||| Sbjct 540 GAGAACAGATCTTG 553 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61782377390 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5