BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19120.1
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952605 jgi|Araly1|952605|scaffold_93900002.1 926 0.0
> Ahg952605 jgi|Araly1|952605|scaffold_93900002.1
Length=553
Score = 926 bits (501), Expect = 0.0
Identities = 537/554 (97%), Gaps = 3/554 (1%)
Strand=Plus/Plus
Query 850 ACGTTTGTGTGAAAGCTCCAGGTGGAGAAGACGACTCTTCTCATTTCAGAGATAGTCTTC 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACGTTTGTGTGAAAGCTCCAGGTGGAGAAGACGACTCTTCTCATTTCAGAGATAGTCTTC 60
Query 910 TATATAAGAGGCTTACTTCAGGAGACATTGTTTGGGAGAAAGTTATCAATATTAGAGGTC 969
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTATAAGAGGCTTACTTCAGGAGACATTGTTTGGGAGAAAGTTATCAATATTAGAGGTC 120
Query 970 ACCATGTGAGACCATACATTGTTGGAGATTGGTGTTATCCTCTTCTCTCATTCCTGATGA 1029
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 ATCATGTGAGACCATACATTGTTGGAGATTGGTGTTACCCTCTTCTCTCATTCCTGATGA 180
Query 1030 CTCCATTTTCACCAAATGGCTCTGGTACGCCACCGGAGAATCTATTCGATGGAATGTTGA 1089
|||| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct 181 CTCCCTTTTCACCAAATGGCTCTGGTTCGCCGCCGGAGAATCTATTCGACGGAATGTTGA 240
Query 1090 TGAAAGGAAGGTCAGTGGTGGTGGAAGCTATTGGATTGCTCAAGGCTAGATGGAAGATTC 1149
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGAAAGGAAGGTCAGTTGTGGTGGAAGCTATTGGATTGCTCAAGGCTAGATGGAAGATTC 300
Query 1150 TTCAGAGTTTGAATGTTGGTGTGAACCATGCTCCTCAGACTATTGTGGCTTGTTGTGTGT 1209
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCAAAGTTTGAATGTTGGAGTGAACCATGCTCCTCAGACTATTGTGGCTTGTTGTGTGT 360
Query 1210 TGCATAATCTTTGTCAGATTGCTAGAGAACCTGAACCGGAGATTTGGAAGGATCCAGATG 1269
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 361 TGCATAATCTTTGTCAGATTGCTAGAGAACCCGAACCGGAGATTTGGAAGGATCCGGATG 420
Query 1270 AAGCTGGAACGCCTGCAAGAGTTTTGGAGAGTGAGAGGCAGTTTTACTATTACGGGGAGA 1329
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGCTGGAACGCCTGCAAGAGTATTGGAGAGTGAGAGGCAGTTTTACTATTACGGGGAGA 480
Query 1330 GTTTGAGGCAAGCATTGGCAGAAGATTTACACCAGAGACTCTCCTCGAGGTAAAAGACAT 1389
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 481 GTTTGAGGCAAGCATTGGCAGAAGATTTGCACCAGAGACTCTCCTCGAGGTAAA-GACAT 539
Query 1390 GA-A-CAGATCTTG 1401
|| | |||||||||
Sbjct 540 GAGAACAGATCTTG 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61782377390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5