BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19130.1
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479428 jgi|Araly1|479428|fgenesh2_kg.3__2129__AT3G19130.1 2606 0.0
Ahg474095 jgi|Araly1|474095|fgenesh2_kg.1__4049__AT1G49600.1 917 0.0
> Ahg479428 jgi|Araly1|479428|fgenesh2_kg.3__2129__AT3G19130.1
Length=1713
Score = 2606 bits (1411), Expect = 0.0
Identities = 1623/1723 (94%), Gaps = 24/1723 (1%)
Strand=Plus/Plus
Query 9 tctctctctctctctccgcctccttttaagaccaaatctctctct-a-cc-tctatctct 65
||||||||||||||||||||||||||||||||||| ||||||||| | || ||| |||||
Sbjct 1 TCTCTCTCTCTCTCTCCGCCTCCTTTTAAGACCAACTCTCTCTCTAATCCATCTCTCTCT 60
Query 66 ctctcCGCCATTACCAGAGCTCAACGAGCTCTCACTTTCTTTACGCACACTTGTTGGAAC 125
|||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 61 CTCTCCGCCATTTCCAGAGCTCAACGAGCTCTCACTTTCTTTACG--CACTTCTTGGAAC 118
Query 126 GAAATATATTCATAGAGAAG-A-A-GAATCTCGAAACTCTTGAATCTAAAACAACTCGGA 182
|||| ||||||| ||||||| | | |||||| ||| |||||||||||| |||||||||
Sbjct 119 GAAAGATATTCAGAGAGAAGAAGAGGAATCTTGAAGTTCTTGAATCTAATACAACTCGGT 178
Query 183 GACTCTGTTTTCCC-TTTCCGGAGATCAGATCGGATCAAGATGCAGACAACCAACGGCTC 241
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GACTCTG-TTTCCCATTTCCGGAGATCAGATCGGATCAAGATGCAGACAACCAACGGCTC 237
Query 242 AGATTCGACGTTGGCAACTTCCGGAGCCACACCGCCGAATCAACAAACCCCTCCTCCACC 301
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 238 AGATTCAACGTTGGCAACTTCCGGAGCCACGCCGCCGAATCAACAAACCCCTCCTCCACC 297
Query 302 Tcagcagtggcagcagc-agca--acagcaacagcaacagTGGATGGCT---GCCATGCA 355
||| ||||||||||| | | || ||||| |||||||||||||||||| ||||||||
Sbjct 298 TCACCAGTGGCAGCAACAACCACCGCAGCAGCAGCAACAGTGGATGGCTGCGGCCATGCA 357
Query 356 ATATCCACCAGCGGCGGCGATGATGATGATGCAGCAGCAACAGATGCTGATGTATCCTCA 415
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 358 ATAT---CCAGCGGCGGCGATGATGATGATGCAGCAGCAACAGATGATGATGTATCCTCA 414
Query 416 TCAATATGTTCCGTATAATCAAGGTCCTTATCAGCAGCATCATCCTCAGCTTCACCAATA 475
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 415 CCAATACGTTCCGTATAATCAAGGTCCTTATCAGCATCATCATCCTCAGCTTCACCAATA 474
Query 476 CGGGTCTTATCAACAGCACCAGCACCAGCAACACAAGGCTATTGACCGTGGATCTGGAGA 535
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||
Sbjct 475 CGGGTCTTATCAACAGCACCAG---CAGCAACACAAGCCTCTTGACCGTGGATCTGGAGA 531
Query 536 TGATGTCAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCA 595
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TGATGTCAAGACTCTCTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCA 591
Query 596 TTCTTGCTTTTCTCACACCGGCGAGGTTTCTTCTGTGAAAGTTATACGTAACAAGCTCAC 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CTCTTGCTTTTCTCACACCGGCGAGGTTTCTTCTGTGAAAGTTATACGTAACAAGCTCAC 651
Query 656 TTCTCAATCAGAAGGGTATGGGTTTGTTGAGTTTCTTTCACGTGCTGCAGCTGAAGAAGT 715
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 652 TTCTCAATCAGAAGGGTATGGGTTTATTGAGTTTCTTTCACGTGCTGCAGCTGAAGAAGT 711
Query 716 TCTTCAGAACTATAGTGGTTCAGTGATGCCAAACTCGGACCAACCCTTCCGTATAAACTG 775
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 712 TCTTCAGAACTATAGTGGTTCGGTGATGCCAAACTCAGACCAGCCCTTCCGTATAAACTG 771
Query 776 GGCATCTTTTAGTACTGGTGAAAAAAGAGCAGTGGAAAATGGTCCAGACCTATCTGTTTT 835
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 772 GGCATCTTTTAGTACTGGTGAAAAAAGAGCAGTGGAAAATGGTCCAGATCTATCCATATT 831
Query 836 TGTGGGAGACTTGTCTCCAGATGTCACTGACGTTTTATTGCATGAGACCTTTTCTGATAG 895
||| ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 832 TGTTGGAGATTTGTCTCCAGATGTCACTGATGCTTTATTGCATGAGACCTTTTTTGATAG 891
Query 896 ATATCCTTCTGTCAAAAGCGCCAAAGTTGTGATTGATTCCAACACCGGCCGGTCCAAAGG 955
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 892 ATATCCTTCTGTCAAAAGCGCCAAAGTTGTGATTGATTCCAACACTGGCCGGTCCAAAGG 951
Query 956 TTATGGTTTTGTGAGGTTCGGTGATGAAAATGAGAGGTCAAGGGCTTTGACAGAAATGAA 1015
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 952 TTACGGTTTTGTGAGGTTTGGTGATGAAAATGAGAGATCAAGGGCTTTGACAGAAATGAA 1011
Query 1016 TGGAGCTTACTGTTCGAACAGGCAAATGCGTGTAGGTATTGCAACTCCCAAAAGAGCGAT 1075
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1012 TGGAGCTTACTGTTCGAACAGGCAAATGCGTGTAGGTGTTGCAACTCCCAAAAGAGCGAT 1071
Query 1076 TGCTAATCAGCAACAACATTCTTCACAAGCTGTGATTCTGGCTGGTGGACATGGATCAAA 1135
|||||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 1072 TGCTAATCAGCAGCAACATTCTTCACAAGCTCTGATACTGGCTGGTGGACATGGAGCAAA 1131
Query 1136 TGGTTCCATGGGTTATGGCTCGCAGTCTGATGGCGAATCAACTAACGCAACAATATTTGT 1195
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TGGTTCCATGGCTCATGGCTCGCAGTCTGATGGCGAATCAACTAACGCAACAATATTTGT 1191
Query 1196 TGGCGGCATTGACCCTGATGTTATTGATGAAGACCTCAGACAACCTTTTTCCCAGTTTGG 1255
||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1192 TGGCGGCATTGACGCTGATGTTACTGACGAAGACCTCAGACAACCTTTTTCCCAGTTTGG 1251
Query 1256 AGAGGTTGTTTCAGTGAAGATCCCAGTAGGGAAAGGATGTGGATTTGTCCAATTTGCTGA 1315
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1252 CGAGGTTGTTTCAGTGAAGATACCAGTAGGCAAAGGATGTGGATTTGTCCAATTTGCTGA 1311
Query 1316 CAGGAAGAGTGCTGAAGATGCTATCGAGAGTTTGAACGGGACAGTCATCGGCAAGAACAC 1375
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1312 CAGGAAGAGTGCTGAAGATGCTATCGAGACTTTGAATGGGACAGTCATCGGCAAGAACAC 1371
Query 1376 TGTCAGACTCTCCTGGGGACGAAGCCCAAACAAGCAGTGGAGAGGAGACTCAGGGCAGCA 1435
|||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1372 TGTCAGACTCTCTTGGGGACGAAGCCCGAACAAACAGTGGAGAGGAGACTCAGGACAGCA 1431
Query 1436 GTGGAATGGAGGATACTCACGAGGACATGGTTACAACAATGGAGGAGGATATGCTAACCA 1495
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1432 GTGGAATGGAGGATACTCACGAGGACAAGGTTACAACAGTGGAGGAGGATATGCTAACCA 1491
Query 1496 CCACGACTCCAACAACTATCATGGGGAGAATTGAAGAGACTCATCAAGTGATCATCTTCA 1555
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1492 CCACGACTCCAACAACTATCATGGGGAAAATTGAAGAGACTCATCAAGTGATCATCATCA 1551
Query 1556 TCATGGTTTCACATATCAAAGCTAAAACCTGTAGTCGAAAGAAGAATTTTGTTAGATGGA 1615
||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 1552 TCATGGTTTCACACATCAAAGCTAAAACTTGTAGTGGAAAGGAGAATTTTGTTAGATGGA 1611
Query 1616 TTTGATTTTGATAGACTTGTTGTTTGGAGGAG-ATTCAAAAATTTTGGTTACTGGTTTGT 1674
||||||||||||| |||||||||||| || || |||| ||||||||||||||||||||||
Sbjct 1612 TTTGATTTTGATAAACTTGTTGTTTGAAGAAGGATTCGAAAATTTTGGTTACTGGTTTGT 1671
Query 1675 CTCAGACTAATATAAATGGTTGCAACTTGTTGGATCAAAATTC 1717
||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1672 CTCAGACTAATATAA-TGGTTGTGACTTGTTGGATCAAAATTC 1713
> Ahg474095 jgi|Araly1|474095|fgenesh2_kg.1__4049__AT1G49600.1
Length=1668
Score = 917 bits (496), Expect = 0.0
Identities = 971/1190 (82%), Gaps = 73/1190 (6%)
Strand=Plus/Plus
Query 327 caacagcaacagTGGATGGCTGCCATGCA--ATATCCACCAGCGGCGGCGAT-GATGATG 383
||||| ||||| ||||||||||| ||||| | || | || || || || || | | |||
Sbjct 136 CAACAACAACAATGGATGGCTGCTATGCAGCA-ATAC-CCTGCAGCTGCTATGGCT-ATG 192
Query 384 ATGCAGCAGCAACAGATGCTGATGTATCCT---CATCAATATGTTCCGTATAATCAAGGT 440
||||| || ||||||||| ||||||||||| |||||||| | ||| || ||||||| |
Sbjct 193 ATGCAACAACAACAGATGATGATGTATCCTCACCATCAATACGCTCCTTACAATCAAGCT 252
Query 441 CCTTATCAGCAGCATCATCCTCAGCTTCACCAATACG--GGT-CTTATCAACAGC-AC-- 494
||||||| | || ||||||||| || ||||||| | | |||||||||||| ||
Sbjct 253 GCTTATCA--A-CAGCATCCTCAG-TT--TCAATACGCTGCTGCTTATCAACAGCAACAA 306
Query 495 CAG---CACC--AG-CA--A-CA-CAA-GGCTATTGAC--CGTGGATC---TGGAGATGA 538
||| |||| || || | || || || | || ||||||| ||| |||||
Sbjct 307 CAGCATCACCAGAGTCAGCAGCAGAAACAGC-AGCCACGTGGTGGATCTGGTGGTGATGA 365
Query 539 TGTCAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCATTC 598
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 366 TGTGAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCATAC 425
Query 599 TTGCTTTTCTCACACCGGCGAGGTTTCTTCTGTGAAAGTTATACGTAACAAGCTCACTTC 658
|| |||||||||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct 426 CTGTTTTTCTCACACCAATGAGGTTTCTTCTGTGAAAGTTATACGCAACAAGCAAACTTG 485
Query 659 TCAATCAGAAGGGTATGGGTTTGTTGAGTTTCTTTCACGTGCTGCAGCTGAAGAAGTTCT 718
|||||| ||||| ||||||||||||||||||||||||||| | |||||||| |||| |||
Sbjct 486 TCAATCTGAAGGATATGGGTTTGTTGAGTTTCTTTCACGTTCAGCAGCTGAGGAAGCTCT 545
Query 719 TCAGAACTATAGTGGT-TCAGTGATGCCAAACTCGGACCAACCCTTCCGTATAAACTGGG 777
||||| || ||| ||| | | ||||| ||| |||| || || |||||| |||||||||
Sbjct 546 TCAGAGCTTTAGCGGTGTAACA-ATGCCGAACGCGGAACAGCCTTTCCGTTTAAACTGGG 604
Query 778 CATCTTTTAGTACTGGTGAAAAAAGAGCAGTG-GAAAATGGTCCAGACCTATCTGTTTTT 836
||||||| ||||||||||| ||||||||| | || |||||||| |||||||| | |||
Sbjct 605 CATCTTTCAGTACTGGTGAGAAAAGAGCA-TCAGAGAATGGTCCTGACCTATCAATATTT 663
Query 837 GTGGGAGACTTGTCTCCAGATGTCACTGACGTTTTATTGCATGAGACCTTTT-CTGATAG 895
|| ||||| ||| |||||||||| | ||| | | | |||| |||||| |||| ||| |||
Sbjct 664 GTTGGAGATTTGGCTCCAGATGTGAGTGATGCTGTCTTGCTTGAGAC-TTTTGCTGGTAG 722
Query 896 ATATCCTTCTGTCAAAAGCGCCAAAGTTGTGATTGATTCCAACACCGGCCGGTCCAAAGG 955
|||||| ||||||||| | || ||||||||||| |||||||||||||| || ||||||||
Sbjct 723 ATATCCATCTGTCAAAGGTGCGAAAGTTGTGATCGATTCCAACACCGGGCGTTCCAAAGG 782
Query 956 TTATGGTTTTGTGAGGTTCGGTGATGAAAATGAGAGG-TCAAGGGCTTTGACAGAAATGA 1014
||| || ||||| ||||| |||||||| ||||| | | ||||||||| ||||||||||||
Sbjct 783 TTACGGGTTTGTCAGGTTTGGTGATGAGAATGA-ACGATCAAGGGCTATGACAGAAATGA 841
Query 1015 ATGGAGCTTACTGTTCGAA-CAGGCAAATGCGTGTAGGTATTGCAACTCCC-AAAAGAGC 1072
|||| |||| |||||| || ||||||||||||||| ||||| ||||| ||| ||||||||
Sbjct 842 ATGGTGCTTTCTGTTC-AAGCAGGCAAATGCGTGTTGGTATCGCAAC-CCCGAAAAGAGC 899
Query 1073 -GATTGCTAATCAGC-AACAACATTCTTCACAAGCTGTGATTCTGGCTGGTGGACATGGA 1130
| | ||| | | || ||||| || |||||||||| | | ||||||||||||||||||
Sbjct 900 TGCT-GCTTA-CGGCCAACAAAATGGTTCACAAGCTCTCACACTGGCTGGTGGACATGGA 957
Query 1131 TCAAATGGTTCCATGGGTTATGGCTCGCAGTCTGATGGCGAATCAACTAACGCAACAATA 1190
||||||||| | || | |||||||| ||||||| |||| ||||||||
Sbjct 958 GGAAATGGTTC-A----------CT-G---TCTGATGGAGAATCAAATAACTCAACAATA 1002
Query 1191 TTTGTTGGCGGCATTGACCCTGATGTTATTGATGAAGACCTCA-GACAACCTTTTTCCCA 1249
|||||||| ||| |||| ||||||||| ||| |||||||||| | ||||||||||||||
Sbjct 1003 TTTGTTGGTGGCCTTGATGCTGATGTTACTGAGGAAGACCTCATG-CAACCTTTTTCCCA 1061
Query 1250 GTTTGGAGAGGTTGTTTCAGTGAAGATCCCAGTAGGGAAAGGATGTGGATTTGTCCAATT 1309
|||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1062 GTTTGGGGAAGTTGTTTCAGTGAAGATCCCAGTAGGAAAAGGATGTGGCTTTGTCCAATT 1121
Query 1310 TGCTGACAGGAAGAGTGCTGAAGATGCTATCGAGAGTTTGAACGGGACAGTCATCGGCAA 1369
|||| ||||| ||||||||||||| || || | || |||||||||||||||||||| ||
Sbjct 1122 TGCTAACAGGCAGAGTGCTGAAGAAGCCATTGGGAACTTGAACGGGACAGTCATCGGGAA 1181
Query 1370 GAACACTGTCAGACTCTCCTGGGGACGAAGCCCAAACAAGCAGTGGAGAGGAGACTCAGG 1429
||||||||| | || || |||||| ||||||| ||||| ||||||||| | ||| | ||
Sbjct 1182 AAACACTGTCCGCCTTTCGTGGGGAAGAAGCCCCAACAAACAGTGGAGAAGTGACACTGG 1241
Query 1430 GCAGC-AGTGGAATGGAGGATACTCACGAGGACATGGTTACAACAATGGA 1478
|| | | |||||||||||||| ||| |||| || |||||||||||||||
Sbjct 1242 -CAACCAATGGAATGGAGGATATTCAAGAGGTCAAGGTTACAACAATGGA 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5