BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19140.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929800 jgi|Araly1|929800|scaffold_302257.1 241 4e-63
> Ahg929800 jgi|Araly1|929800|scaffold_302257.1
Length=376
Score = 241 bits (130), Expect = 4e-63
Identities = 219/261 (84%), Gaps = 9/261 (3%)
Strand=Plus/Plus
Query 1 ATGAACGAAGATGCTCTCGAAGCTGTACGA--TCTCGCACATTCTTCGCGATTCTGACTG 58
||||||||||||| |||||||||| || || ||||| | |||||||||||||||||||
Sbjct 24 ATGAACGAAGATGTTCTCGAAGCTCTAGGATGTCTCG-TC-TTCTTCGCGATTCTGACTG 81
Query 59 TGTTTTATTCTATATTTCGTTGTTGTCTTGCTTATTGCAACAAAGGTGACGATGATCATC 118
||||||||| | |||||||||||||||||||||||||| |||| ||||| |||||| |||
Sbjct 82 TGTTTTATTGTGTATTTCGTTGTTGTCTTGCTTATTGCGACAACGGTGATGATGATGATC 141
Query 119 -TG-AT-TCATCCTAGTCATAGTTTACATGTCATAAAAGCCACTGGGATCAACCCTT-CC 174
| | |||||| |||||||||||||||| |||||||| ||||||| | |||| ||
Sbjct 142 ATCCAAATCATCCCGGTCATAGTTTACATGTAATAAAAGCTGCTGGGAT-AGGCCTTTCC 200
Query 175 GTTCTTTTATCAATTCCTGTCGTATCTTTCAACGCTAATGCCTTCAAAGACAATATCGAA 234
||||| ||| || || ||| |||||||||||||| ||| ||| ||||| || |||||
Sbjct 201 GTTCTCCAATCGATCCCCGTCTTATCTTTCAACGCTCATGACTTTAAAGATAACGTCGAA 260
Query 235 TGCGTCGTTTGTCTATCAAAG 255
||||||||||||||||| |||
Sbjct 261 TGCGTCGTTTGTCTATCGAAG 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15338546778
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5