BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19150.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318670 jgi|Araly1|318670|fgenesh1_pm.C_scaffold_3001686 710 0.0
> Ahg318670 jgi|Araly1|318670|fgenesh1_pm.C_scaffold_3001686
Length=573
Score = 710 bits (384), Expect = 0.0
Identities = 530/596 (89%), Gaps = 28/596 (5%)
Strand=Plus/Plus
Query 42 atgagcgagagaaagcgagagcTTGCAGAAGAAGCTTCAAGCACAAGCTTCTCACCACT- 100
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 1 ATGAGCGAGAGAAAGCGAGAGCTTGAAGAAGAAGCTTCAAGCACAAGCGTCTCACCTCTC 60
Query 101 GA-AGAAA-ACGAAGCTTAATGATTCTTCTGATTCATCACCGGACTCTCATGACGTCATC 158
| | ||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AACAAAAAGACAAAGCTTAATGA---TTCTGATTCATCACCGGACTCTCATGACGTCATC 117
Query 159 GTCTTCGCGGTTTCATCTTCTTCCGTTGCTTCGTCGGCGGCTTTAGCGTCTGATGAATGT 218
|||||||||| ||| | |||||| |||||||||||||||||||||| || |||||||||
Sbjct 118 GTCTTCGCGGCTTCTTATTCTTCTATTGCTTCGTCGGCGGCTTTAGCTTCAGATGAATGT 177
Query 219 TCCGTTACCATCGGTGGAGAAGAAAGTGATCAGTCCTCGAGTATCAGCTCCGGTTGTTTC 278
|||||||| | || |||||||||| ||||||| |||||||||||||||||||| ||||
Sbjct 178 TCCGTTACTACCGCCGGAGAAGAAAACGATCAGTGCTCGAGTATCAGCTCCGGTTTTTTC 237
Query 279 ACCAGTGAATCGAAAGAAATCGCGAAGAACAGTTCGTCGTTTGGTGTAGATCTGGAGGA- 337
| | | || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 A-C-------C---AG-AATCGCGAAGAACAGTTCGTCGTTTGGTGTAGATCTGGA-GAC 284
Query 338 TCATCAAATCGAA-ACCGAAACCGAAACCTCAACATTCATCACCAGCAATTTCAGAAAAG 396
|||| ||||| || |||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 285 TCATGAAATC-AAGACCGAAACCGAAACCTCAACATTCATCAACAACAAATTCAGAAAAG 343
Query 397 AGACGAGTCCAGTGAGTGAGGGTTTGGGAGAAACGACAACAGAAATGGAATCATCATCGG 456
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 344 AGACAAGTCCAGTGAGCGAGGGTTTGGGAGAAACAACAACAGAAATGGAATCATCATCGG 403
Query 457 CAACGAAGAGAAAACAACCGGGGGTGAGGAAGACTCCAACGGCGGCGGAGATTGAGGATT 516
| ||| |||||||||||||| ||||| |||||||||||| || |||||||||||||||
Sbjct 404 CGACGGAGAGAAAACAACCGAAAGTGAGCAAGACTCCAACGCCGACGGAGATTGAGGATT 463
Query 517 TGTTCTCGGAGCTAGAGAGTCAAGACGATAAGAAGAAGCAATTCATAGAAAAGTACAACT 576
| ||||||||||| |||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 464 TCTTCTCGGAGCT--AGAG---A-ACGATAAGAAGAAGCGATTCATAGAAAAGTACAACT 517
Query 577 TCGATATTGTCAATGACGAACCGCTTGAAGGTCGCTACAAGTGGGATCGACTTTAA 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TCGATATTGTCAATGACGAACCGCTTGAAGGTCGCTACAAGTGGGATCGACTTTAA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5