BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19160.1
Length=1040
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318671 jgi|Araly1|318671|fgenesh1_pm.C_scaffold_3001687 1500 0.0
> Ahg318671 jgi|Araly1|318671|fgenesh1_pm.C_scaffold_3001687
Length=1005
Score = 1500 bits (812), Expect = 0.0
Identities = 939/1001 (94%), Gaps = 6/1001 (1%)
Strand=Plus/Plus
Query 43 ATGCAAAATCTTACGTCCACATTCGTCTCTCCTTCCATGA-TCCCGATCACTTCTCCGCG 101
|||||||||||||| ||||||||||| |||| |||||| | |||||||||||||||||||
Sbjct 1 ATGCAAAATCTTACTTCCACATTCGTGTCTCGTTCCAT-AGTCCCGATCACTTCTCCGCG 59
Query 102 GCTGCGACTGCCACCACCACGATCAGTAGTTCCCATGACTACCGTTTGCATGGAACAATC 161
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ACTGCGACTGCCACCACCACGATCAGTAGTTCCCATGACTACCGTTTGCATGGAACAATC 119
Query 162 ATACAAGCAAAAAGTGGTTGTGATCATGGGAGCCACCGGATCAGGCAAGTCATGCCTCTC 221
|| ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||
Sbjct 120 ATCCAAGCAAAAAGTGGTTGTGATCATGGGAGCCACGGGATCAGGCAAGTCACGTCTCTC 179
Query 222 AATCGATCTAGCAACTCGTTTCTCTGGCGAGATCGTCAATTCCGACAAGATTCAATTCTA 281
||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||||||||||
Sbjct 180 AATCGATCTAGCAACCCGTTTCTCTGGAGAGGTCGTCAATTCTGACAAAATTCAATTCTA 239
Query 282 CGATGGATTGAAGGTCACTACGAATCAAATGAGCATCCTTGAGAGATGTGGAGTCCCTCA 341
| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 240 CAATGGATTGAAGGTCACTACTAATCAAATGAGCATCCCTGAGAGATGTGGAGTCCCTCA 299
Query 342 CCATCTCCTTGGTGAGCTCCCTCCGGATGATAGCGAACTAACTACCTCCGAATTCCGCTC 401
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 300 CCATCTCCTTGGTGAGCTCCCTCCGGATGACAGCGAACTAACTACCTCCGAATTCCGCTC 359
Query 402 TTTGGCGTCGCGGTCCATCTCCGAGATTACTGCTCGTGGAAACCTCCCGATTATAGCTGG 461
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 360 TTTGGCGTCGCGGTCCATCTCCGAGATTACTGCTCGTGGAAATCTCCCGATTGTAGCTGG 419
Query 462 TGGATCAAACTCCTTCATTCATGCTCTCCTTGTCGACCGTTTTGACCCCAAAACCTATCC 521
|||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 420 CGGATCAAACTCCTTTATTCATGCTCTCCTTGTCGACCGTTTCGACCCCCAAACCTATCC 479
Query 522 ATTCTCTTCTGAGA-CATCCATCTCTTCCGGCTTGAGGTACGAGTGTTGCTTCCTTTGGG 580
||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 ATTCTCTTCCGAGGTC-TCCATCTCTTCCAACTTGAGGTACGAGTGTTGCTTCCTTTGGG 538
Query 581 TGGATGTCTCAGTGTCGGTCCTGTTCGAGTACCTCTCGAAACGTGTCGACCAGATGATGG 640
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 539 TGGATGTCTCAGTCTCGGTCCTGTTCGAGTACCTCTCAAAACGTGTCGACCAGATGATGG 598
Query 641 AGTCAGGGATGTTCGAGGAGCTAGCCGGTTTCTACGACCCGAGATATTCCGGGTCCGCAA 700
|||||||||||||||||||||| || ||||||||| |||||||||||||||||||| | |
Sbjct 599 AGTCAGGGATGTTCGAGGAGCTCGCTGGTTTCTACAACCCGAGATATTCCGGGTCCACGA 658
Query 701 TCCGAGCCCACGGGATTCACAAGACCATAGGAATACCCGAGTTCGACCGGTACTTCAGCT 760
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 659 TCCGAACCCACGGGATTCACAAGACCATAGGAATACCCGAGTTTGACCGGTACTTCAGCT 718
Query 761 TATACCCGCCTGAGAGA-AAGCAGAAGATGTCCGAATGGGACCAAGCAAGAAAGGGGGCG 819
||||||| || |||| | || || |||||| |||||||||||||||||||||||| |||
Sbjct 719 TATACCCACCGGAGA-ATAACCACAAGATGCCCGAATGGGACCAAGCAAGAAAGGCGGCA 777
Query 820 TATGACGAAGCTGTCCAAGAGATCAAAGAGAACACATGGAGGCTTGCGAAGAAGCAGATT 879
|| || |||||||| |||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 778 TACGAGGAAGCTGTGCAAGAGATCAAAGAGAACACATGGCGTCTTGCAAAGAAGCAGATT 837
Query 880 GAGAGGATCATGAAGCTGAAAAGCAGCGGATGGGACATTCAGAGGTTGGACGCTACGCCG 939
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAGAGGATCGTGAAGCTGAAAAGCAGCGGATGGGACATTCAGAGGTTGGACGCTACGCCG 897
Query 940 TCATTTGGAAGATCGTCAAGAGAGATTTGGGACAATACTGTTTTGGATGAAAGCATCAAG 999
||||| |||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 898 TCATTCAGAAGATCGTCGAGAGAGATTTGGGACAAGACTGTTTTGGATGAAAGCGTCAAG 957
Query 1000 GTTGTGAAACGCTTCTTGGTGAAAGACAAAGTGTGAGTTAT 1040
||||||||||||||||||||||||||||||||| |||||||
Sbjct 958 GTTGTGAAACGCTTCTTGGTGAAAGACAAAGTGGGAGTTAT 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38694760755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5