BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19180.1
Length=2865
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318673 jgi|Araly1|318673|fgenesh1_pm.C_scaffold_3001689 2039 0.0
> Ahg318673 jgi|Araly1|318673|fgenesh1_pm.C_scaffold_3001689
Length=2508
Score = 2039 bits (1104), Expect = 0.0
Identities = 1194/1239 (96%), Gaps = 0/1239 (0%)
Strand=Plus/Plus
Query 144 GCTTACACATTTCCAGTTCTCCCTTCTTCTTGTCTGCTTTGCGGAATCTCCAATCGCAGC 203
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 10 GCTTACACATTTCCAGTTCTCCCTTCTTCTTGTCTGCTTTGCGCAATCTCTAATCGCGGC 69
Query 204 ACCAGCTTCGTCGTAGATCGCCCGGAGCTTCAGATCTCAGGTCTCCTCGTCGTTCGTTCT 263
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 70 ACCAGCTTCGTCGTAGATCGCCCGGAGCTTCAGATCTCAGGTCTCTTCGTCGTTCGTTCT 129
Query 264 GAATCCGGTGAATTCTTCGGTTCTGGTTTATCTTTGCGGCGGTTTCAGCGAGAAGGACGG 323
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 130 GAATCCGGTGAAATCTTCGGTTCTGGTTTATCTTTGCGGCGGTTTCAGCGTGAAGGACGG 189
Query 324 AGGAGGTTGAATGCTGCTGGTGGTGGTATCCATGTCGTCGACAATGCGCCGTCTCGTACT 383
|||||| ||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 190 AGGAGGCTGAATGCTGGTGGTGGTGGTATCCATGTTGTGGACAATGCGCCGTCTCGTACT 249
Query 384 TCTTCTCTCGCTGCATCTACCTCTACAATCGAACTCCCGGTTACGTGTTACCAGCTTATC 443
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 250 TCTTCCCTCGCTGCATCTACCTCGGCAATCGAAATCCCGGTTACGTGTTACCAGCTTATC 309
Query 444 GGAGTTTCTGAGCAAGCTGAGAAAGACGAGGTCGTTAAGTCGGTTATAAATTTGaaaaaa 503
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 310 GGAGTTTCTGATCAAGCTGAGAAAGACGAGGTGGTGAAGTCGGTTATAAATTTGAAAAAA 369
Query 504 aCTGATGCTGAAGAGGGTTATACAATGGAAGCTGCTGCAGCTCGCCAGGATCTTCTCATG 563
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 370 GCTGATGCTGAAGAAGGTTATACAATGGAAGCTGCTGTAGCTCGCCAGGATCTTCTCATG 429
Query 564 GATGTTAGGGATAAACTTCTTTTTGAATCAGAATATGCTGGTAACCTAAAAGAAAAGATT 623
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 430 GATGTTAGGGATAAACTTCTTTTTGAACCAGAATATGCTGGTAACCTGAAAGAAAAGATC 489
Query 624 GCTCCTAAATCTCCTCTCAGAATTCCGTGGGCATGGTTGCCTGGTGCTCTATGCCTTCTT 683
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 490 GCTCCTAAATCTCCTCTTAGAATTCCGTGGGCATGGTTGCCTGGTGCTCTTTGCCTTCTT 549
Query 684 CAAGAGGTTGGACAAGAAAAACTTGTGCTGGATATTGGCCGGGCTGCTCTCAGGAACCTT 743
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 550 CAAGAGGTTGGACAAGAAAAACTCGTGCTGGATATTGGCCGGGCTGCTCTCAGGAACCTT 609
Query 744 GATTCAAAGCCATATATTCATGATATATTCTTATCTATGGCACTTGCTGAGTGTGCAATT 803
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 610 GATTCGAAGCCATATATTCATGATATATTTTTATCTATGGCACTTGCTGAGTGTGCGATT 669
Query 804 GCCAAGGCTGCTTTCGAGGTTAACAAGGTCTCTCAAGGATTTGAAGCTCTTGCTCGTGCT 863
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GCGAAGGCTGCTTTCGAGGCTAACAAGGTCTCTCAAGGATTTGAAGCTCTTGCTCGTGCT 729
Query 864 CAAAGTTTTCTGAAGAGTAAAGTTACTCTTGGGAAACTTGCATTGTTAACTCAGATTGAG 923
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CAATGTTTTCTGAAGAGTAAAGTTACTCTTGGGAAACTTGCATTGTTAACTCAGATTGAG 789
Query 924 GAGTCACTAGAGGAGCTTGCACCACCTTGCACATTGGATCTACTGGGCCTGCCACGCACG 983
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 790 GAGTCACTAGAGGAGCTTGCACCTCCTTGCACACTGGATCTACTGGGCCTGCCTCGCACG 849
Query 984 CCAGAAAATGCAGAGAGGAGGCGAGGTGCAATTGCCGCGCTACGCGAACTGCTCAGACAG 1043
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 850 CCAGAAAATGCAGAGAGGAGGCGAGGTGCAATTGCAGCGTTACGCGAACTGCTCAGACAG 909
Query 1044 GGCCTTAGTGTTGAAGCTTCATGTCAAATTCAAGACTGGCCATGCTTTTTGAGCCAGGCA 1103
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GGCCTTAGTGTTGAAGCTTCATGTCAAATTCAAGACTGGCCATGCTTTTTGAGCCAGGCG 969
Query 1104 ATTAGCAGGTTATTGGCCACAGAGATTGTCGATCTTCTTCCATGGGATGATTTAGCCATT 1163
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 970 ATTAGTAGGTTATTGGCCACAGAGATTGTCGATCTTCTTCCATGGGATGACTTAGCCATT 1029
Query 1164 ACACGGaaaaataaaaaaTCACTGGAATCCCACAATCAAAGAGTTGTTATTGATTTTAAT 1223
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 1030 ACACGGAAAAATAAAAAATCACTCGAATCCCACAATCAAAGAGTGGTAATTGATTTTAAT 1089
Query 1224 TGTTTCTACATGGTGTTACTTGGTCACATCGCTGTTGGATTTTCAGGCAAGCAAAATGAA 1283
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1090 TGTTTCTACATGGTGTTACTTGCTCACATCGCTGTTGGATTTTCAGGCAAGCAAAATGAA 1149
Query 1284 ACGATTAATAAAGCAAAAACGATATGCGAATGTCTCATAGCATCAGAAGGTGTTGATCTG 1343
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1150 ACGATTAATAAAGCAAAAACAATATGCGAATGTCTCATAGCATCAGAAGGTGTTGATCTG 1209
Query 1344 AAATTTGAGGAAGCTTTTTGCTCATTTCTTCTAAAACAG 1382
|||||||||||||||||||||||||||||||||||||||
Sbjct 1210 AAATTTGAGGAAGCTTTTTGCTCATTTCTTCTAAAACAG 1248
Score = 1869 bits (1012), Expect = 0.0
Identities = 1158/1228 (94%), Gaps = 12/1228 (1%)
Strand=Plus/Plus
Query 1379 ACAGGGTTCCGAGGCAGAGGCCCTGGAAAAACTTAAGCAGCTGGAATCAAATTCAGACTC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 ACAGGGTTCCGAGGCAGAGGCCCTGGAAAAACTTAAGCAGCTGGAATCAAATTCAGACTC 1340
Query 1439 TGCCGTTCGTAATTCGATCTTGGGGAAAGAGTCGAGAAGTACTTCTGCTACTCCCTCACT 1498
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 1341 TGCCGTTCGTAATTCGATCCTGGGGAAAGAGTCGAGAAGTACTTCTGCTGCTCCATCACT 1400
Query 1499 GGAAGCGTGGCTAATGGAGTCCGTGCTTGCTAACTTTCCAGACACAAGGGGTTGTTCTCC 1558
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 GGAAGCGTGGCTTACGGAGTCCGTGCTTGCTAACTTTCCAGACACAAGGGGTTGTTCTCC 1460
Query 1559 ATCTTTGGCCAATTTTTTCCGGGCTGAAAAGAAATATCCAGAAAACAAGAAAATGGGGTC 1618
||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1461 ATCATTGGCCAATTTTTTTCGGGGTGAAAAGAAATATCCAGAAAACAAGAAAATGGGGTC 1520
Query 1619 ACCTTCGATCATGAATCATAAGACGAACCAAAGACCACTTTCCACAACACAGTTCGTGAA 1678
|||||||||||||||| | ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1521 ACCTTCGATCATGAATTACAAGACAAACCAAAGACCGCTTTCCACAACGCAGTTCGTGAA 1580
Query 1679 CTCGTCACAACATCTTTATACAGCTGTCGAGCAGTTGACACCAACAGATTTGCAGAGCCC 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 CTCGTCACAACATCTTTATACAGCTGTCGAGCAGTTGACACCAACAGATTTGCAGAGCCC 1640
Query 1739 AGTGGTATCAGCCAAGAATAATGATGAAACCAGTGCCAGTATGCCATCTGTTCAACTGAA 1798
|||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 1641 AGTGGTTTCAGCCAAGAATATTGATGAAAGCGGTGCCAGTATGCCATCTGTTCAACTGAA 1700
Query 1799 GAGGAACCTTGGTGTACACAAAAATAAAATATGGGATGAGTGGCTCTCTCAAAGCAGTTT 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 GAGGAACCTTGGTGTACACAAAAATAAAATATGGGATGAGTGGCTCTCTCAAAGCAGTTT 1760
Query 1859 GATCGGAAGGGTATCTGTTGTTGCTTTACTGGGTTGCACCGTGTTCTTCTCTCTGAAGCT 1918
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1761 GATCGGAAGGGTATCTGTTGTTGCTTTACTGGGTTGCACCGTGTTCTTCTCTCTAAAGCT 1820
Query 1919 ATCAGGCATTAGGTCTGGTAGACTACAGAGTATGCCTATATCGGTTTCTGCTAGGCCGCA 1978
| |||||||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1821 AACAGGCATTAGGTCTGGTAGACTACAGAGGCTGCCTATATCGGTTTCTGGTAAGCCGCA 1880
Query 1979 TTCAGAATCAGATTCTTTTCTGTGGAAAACAGAGTCTGGGAATTTCAGAAAAAACCTTGA 2038
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1881 TTCGGAATCAGATTCTTTTCTGTGGAAAACAGAGTCTGGGAGTTTCAGAAAAAACCTTGC 1940
Query 2039 TTCTGTGAATAGAAATGGTATCGTGGGAAACATCAAAGTGCTCATTGACATGTTAAAGAT 2098
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1941 TTCTGTGAATAGAAATGGTATCGTGGGCAACATTAAAGTGCTCATGGACATGTTAAAGAT 2000
Query 2099 GCATTGTGGCGAACATCCGGATGCCCTGTATCTGAAAAGCTCTGGTCAATCAGCTACATC 2158
| || |||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2001 GGATCATGGCGAACATCCAGATGCCTTGTATCTGAAAAGCTCTGGTCAATCAGCTACATC 2060
Query 2159 ATTGTCTCATTCTGCGTCAGAACTGCATAAGAGACCAATGGATACAGAAGAAGCGGAAGA 2218
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2061 ATTGTCTCATTCTGCGTCAGAACTGCATAAAAGACCAATGGATACAGAAGACGCGGAAGA 2120
Query 2219 GCTTGTGAGACAGTGGGAAAATGTTAAGGCTGAAGCTCTTGGACCAACACATCAAGTTTA 2278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2121 GCTTGTGAGACAGTGGGAAAATGTTAAGGCTGAAGCTCTTGGACCAACACATCAAGTTTA 2180
Query 2279 TAGCCTTTCCGAAGTCCTTGATGAATCCATGCTTGTCCAG-T----G------G-CAAAC 2326
|||||||||||||||||||||||||||||||||||||||| | | | |||||
Sbjct 2181 TAGCCTTTCCGAAGTCCTTGATGAATCCATGCTTGTCCAGGTTACTGTTTCTTGGCAAAC 2240
Query 2327 ATTGGCACAAACAGCAGAGGCGAAATCCTGTTATTGGAGGTTCGTTCTGCTTCATCTTGA 2386
||||||||||||||| | || ||||||||||||||||| |||||| |||||||||| ||
Sbjct 2241 GTTGGCACAAACAGCAAAAGCTAAATCCTGTTATTGGAGATTCGTTTTGCTTCATCTAGA 2300
Query 2387 GGTTTTGCAAGCACATATATTCGAAGATGGTATTGCTGGTGAGGCTGCAGAAATCGAAGC 2446
| || | |||||||| || ||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 2301 GATTCTACAAGCACACATTTTCCAAGATGGTATCGCTGGTGAGACTGCAGAAATCGAAGC 2360
Query 2447 TCTTCTGGAGGAAGCAGCAGAATTAGTTGATGAATCTCAGCCCAAAAACGCAAAATATTA 2506
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2361 CCTTCTAGAGGAAGCAGCAGAATTAGTTGATGAATCTCAGCCCAAAAACGCAAAATATTA 2420
Query 2507 TAGCACTTACAAGATCCGATATATTCTGAAGAAGCAAGAAGATGGATTGTGGAAATTCTG 2566
|||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||
Sbjct 2421 TAGCACTTACAAGATCCGCTATACGCTGAAGAAGCAAGAAGATGGATCGTGGAAATTCTG 2480
Query 2567 CCAAAGCGATATTCAAATACAGAAGTGA 2594
| ||||||||||||||||||||||||||
Sbjct 2481 CGAAAGCGATATTCAAATACAGAAGTGA 2508
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108138205555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5