BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19184.1
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479433 jgi|Araly1|479433|fgenesh2_kg.3__2134__AT3G19184.1 1018 0.0
> Ahg479433 jgi|Araly1|479433|fgenesh2_kg.3__2134__AT3G19184.1
Length=1132
Score = 1018 bits (551), Expect = 0.0
Identities = 744/829 (90%), Gaps = 45/829 (5%)
Strand=Plus/Plus
Query 111 AAATGGTGGAATCGGAGCTAAGCTATGAACAGATTCGTTTGAATAGGGTGGAAGAGAACA 170
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 75 AAATGGTGGAATCAGAGCTAAGCTATGAGCAGATTCGTTTGAAAAGGGTGGAAGAGAACA 134
Query 171 AGAAGAGAATGGGGGAGCTTAATCTCAACAAGCTTGCTCAAtctcttcgtgtctcttctt 230
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 135 AGAAGAGAATGGGGGAGCTTAATCTCAACAAGCTTGCTCAATCTCTTCGTG--------T 186
Query 231 cttcttcttcttcttcCAAGCCCTCACCAGCAAAGCCAAGAACGATGCGTATTCCAGTGG 290
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 187 C-TCTTCTTCTTCTTCCAAGCCCTCTCCAGCAAAGCCAAGGACGATGCGTATTCCGGTGG 245
Query 291 ATTTCTCGGAGGTCAGGAGATCAAGCCGTGCCAAAGGTCCACCTCCAAGTTATAAAGAGT 350
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 246 ATTTCTCGGAGGTCAGGAGATCAAGCCGTGCCAAGGGTCCACCTCCAAGTTACAAAGAGT 305
Query 351 TTGGGCTAGAACCACTGGAGAGGAGGCCAAGAAGGAGCTCTCGAAGAAGAGATTTGCTGA 410
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 306 TTGGGCTAGAACCACTGGAGAGGAGGCCAAGAAGGAGCTCTCAAAGAAGAGATCTGCTGA 365
Query 411 ATCGGGTATATGCTTCGGACGACGCAAGAATGTACGCATTCGACAGGGCAGAGAAGCTCC 470
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 366 ACCGGGTATATGCTTCAGACGACGCAAGAATGTACGCATTCGACAGGGCAGAGAAGCTTC 425
Query 471 AGTCAAGCTTAGATTCAGAATATGC-AAGCTTTACCAAACCAATGCTCCAATCACACGTG 529
|||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 426 AGTCAAGCTTAGATCCAGAAT-TCCCAAGCTTTACCAAACCAATGCTCCAATCACACGTG 484
Query 530 ACCGGAGGATTTTGGTTGGGTTTGCCGCTTCCTTTTTGCAAGGCACATATGCCAAAACGT 589
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 485 ACCGGAGGATTTTGGTTGGGCTTGCCACTTCCTTTTTGCAAGGCACATATGCCAAAACGT 544
Query 590 GATGTAATAATGACTTTGGTTGACGAAGAAGAGGAGGAATCTCA-GGCGAAATACCTTGC 648
|||| ||| ||||||||||||||||| ||||| ||||||||| | || ||||||||||||
Sbjct 545 GATGAAATGATGACTTTGGTTGACGAGGAAGATGAGGAATCT-ATGGTGAAATACCTTGC 603
Query 649 TCAGAAGAACGGTCTTAGTGGAGGCTGGCGAGGTTTCGCCATTGATCACCAGTTAGTCGA 708
| |||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 604 TGAGAAGAACGGTCTTAGCGGAGGCTGGAGAGGTTTCGCCATCGATCATCAGTTAGTCGA 663
Query 709 TGGAGATGCTGTAGTGTTTCACCTTATCGCTCGAACAACGTTCAAGGTGTATATCATTAG 768
|||||||||||| |||||||| |||||| | ||||||| ||| |||||||||||||||||
Sbjct 664 TGGAGATGCTGTCGTGTTTCAACTTATCACCCGAACAATGTTTAAGGTGTATATCATTAG 723
Query 769 GGTAaatgatgatgcaaacaatgattcagatgggaatgaggtaaatgatgatgattcaga 828
||||||||| ||||||||||| ||||||||||||||||| | || ||||| ||| | |
Sbjct 724 GGTAAATGAAGATGCAAACAAAGATTCAGATGGGAATGAAG-AA--GATGAAGAT--A-A 777
Query 829 tgggaatgaAGAAGATCGAGATAATGATAATGAATCAAACGAGAAACAGAAGGA-AACTG 887
|| | | || | || || | | || ||| || || |||||||| || ||
Sbjct 778 TG--A-T-AA-----T-GA-AT--T-A-AA-----CAA--GA-AA-CAGAAGGAGAA-TG 812
Query 888 TTTCAGAAGGTAGACAGTTGAGAAGCAGTGGTAAGAGGAAAAGACGAGG 936
||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 813 TTTCAGAAGTTAGACAGTTGAGAAGCAGTGGTAAAAGGAAAAGAGGAGG 861
Score = 224 bits (121), Expect = 1e-57
Identities = 177/201 (88%), Gaps = 16/201 (8%)
Strand=Plus/Plus
Query 934 AGGAAGAAAGTAGAGTTTGAAGGTTTAAATGGGACTTCTAGTTCTATGGAAGGAGTGGGA 993
|||||||||||||||||| |||||| ||||||||| | | | || |||||||||||||
Sbjct 903 AGGAAGAAAGTAGAGTTTCAAGGTTGAAATGGGAC-T-T-G---TACGGAAGGAGTGGGA 956
Query 994 AGATGAACTAAAACTTAACAT-AAC--AGCTTTTTGCGAGTT-TTTTGGCTGAACAGTGA 1049
| | |||||||||| |||||| ||| |||||||||||| || |||||||||| ||||||
Sbjct 957 A-AAGAACTAAAAC-TAACATAAACAGAGCTTTTTGCGA-TTATTTTGGCTGAGCAGTGA 1013
Query 1050 AGTTGTGCAATGAGGGGA-TTGTTTTTGTGTCTTGTTATGGAGACAAACATGGAACGTTA 1108
|||| || ||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1014 AGTTATGTAAT--GGGGATTTGTTTTTGTGTCTTGTAATGGAGACAAACATGGAACGTTA 1071
Query 1109 CGGCTAAATATTTTGATTTTG 1129
|||||||||||||||||||||
Sbjct 1072 CGGCTAAATATTTTGATTTTG 1092
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1154 TTTATGATTTGGATAAGGGAAAGAGAAACAAACTTT 1189
||||||||||||||||||||||||||||||||||||
Sbjct 1097 TTTATGATTTGGATAAGGGAAAGAGAAACAAACTTT 1132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44375075388
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5