BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G19200.1

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg342053 jgi|Araly1|342053|fgenesh1_pg.C_scaffold_3001816           555    2e-157


> Ahg342053 jgi|Araly1|342053|fgenesh1_pg.C_scaffold_3001816
Length=414

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 393/434 (91%), Gaps = 22/434 (5%)
 Strand=Plus/Plus

Query  72   ATGGCTAATGCTGTAGAACAATCCTCATTGTATCCATCCTTCGTAGACGCAAGAATCTCG  131
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| 
Sbjct  1    ATGGCTAATGCTGTAGAACAATCTTCATTGTATCCATCCTTTGTAGACGCAAGAATCTCA  60

Query  132  TTCTCCAATGATTTTGCAGACAGTGATAGTAAACATACGGCATCAAGAGCAGATGG-TCA  190
            |||||||||||||||||||||||||| |||||||| || |  |||||||  || || |||
Sbjct  61   TTCTCCAATGATTTTGCAGACAGTGACAGTAAACAGACAGTGTCAAGAGTGGA-GGATCA  119

Query  191  GATGAAGTACAAGGAAGCTCCTGTTTCTTCGGATTTCAAATTCAATGTCGAAAACTTCGG  250
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  120  GATGAAGTACAAGGAAGCTCCTGTATCTTCGGATTTCAAATTCAATGTCGAAAACTTGGG  179

Query  251  TTTCACTTCTGCGGCTGATGAGATCTTCTTTGGTGGAGTTTTGTTGCCACTTGAGAAGAC  310
            |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  180  TTTCACTTGTGCGGCTGATGAGATCTTCTTTGGTGGAGTTTTGTTGCCACTGGAGAAGAC  239

Query  311  TACTCAGAGGAAAGTGACGACACTTAGAGATGAATTAAGTGCTCAAGATTCTGACCGTAC  370
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  240  TACTCAGAGGAAAGTGACGACACTTAGAGATGAACTAAGTGCTCAAGATTCTGACCGTAC  299

Query  371  CATC-TCATCAAAGGGATCTCGTAACTGGTGGAAATTAGGTCTCAACAAGTCCAAGAAAA  429
            |||| || ||||||||||||||||| |||||||| |||||||||||||||||||||    
Sbjct  300  CATCATC-TCAAAGGGATCTCGTAATTGGTGGAAGTTAGGTCTCAACAAGTCCAAG----  354

Query  430  TCCATTCCAACAACTTCCATCTTCCACACAAATCTCAGAATTGTCTTGCAAGTATACTGG  489
                    || ||  ||||   | |||||||||||||||||||||||||||||||| |||
Sbjct  355  --------AA-AA--TCCA---TGCACACAAATCTCAGAATTGTCTTGCAAGTATAATGG  400

Query  490  AATCTGATGACTGA  503
            ||||||||||||||
Sbjct  401  AATCTGATGACTGA  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27753483576


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5