BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19220.1
Length=971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929810 jgi|Araly1|929810|scaffold_302267.1 1007 0.0
> Ahg929810 jgi|Araly1|929810|scaffold_302267.1
Length=605
Score = 1007 bits (545), Expect = 0.0
Identities = 586/606 (97%), Gaps = 1/606 (0%)
Strand=Plus/Plus
Query 23 ACCTGCAAACTTCTCGTCTCAATGTTCCGATTATACCCTAATTGCTCTCTGCCTTCTCAC 82
||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ACCTGCAAA-TTCTCGTCTCGATGTTCCGATTATACCCTAATTGCTCTCTACCTTCTCAC 59
Query 83 AGACCTCTCGTTTTCCTTCCTCGTCTTCCTTCTCGCTCCCTCCGTTGCCGCGCCGCCGCT 142
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 60 AGACCTCTCGTTTTCCTTCCCCGTCTCCCTTCTCGCTCCCTCCGTTGCCGCGCCGCCGCT 119
Query 143 GATATTCCCCTTGGTGACGGAATCCGATTACCTCGAGAAGCGGATTCAACCTCTGACACG 202
|||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 120 GATATTCCCCTTGGCGACGGAATCCGGTTACCTCGAGAAGCTGATTCCACCTCTGACACG 179
Query 203 GCGAGGTCTCGGGATGTTTCCGTCGCCGCCGGTGGGAATGGTGAAGGTGCTAAGTGGAGG 262
|||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct 180 GCGAGGTCTCGGGATGTTTCCGTCGCCGCCGGCGGGGATGGTGAAGGTGCAAAGTGGAGG 239
Query 263 AAGAGGAGGTTGCTCTGGTCGAAAAGTGGAGAGAGTTACTTGGTAGATGATGGCGACGCG 322
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 240 AAGAGGAGGTTGCTCTGGTCGAAAAGTGGGGAGAGTTACTTGGTAGATGACGGCGACGCG 299
Query 323 CTTCCTCTTCCTATGACTTATCCTGATACATCCCCTGTGTCGCCGGATGTGATTGACCGG 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTCCTCTTCCTATGACTTATCCTGATACATCCCCTGTGTCGCCGGATGTGATTGACCGG 359
Query 383 AGGTTGCAATGTGATCCTGTAGTCGAGGATTGCCGGGAAGTGGTTTATGAATGGACTGGA 442
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 AGATTGCAATGTGATCCTGTAGTCGAGGATTGCCGGGAAGTGGTATATGAATGGACTGGA 419
Query 443 AAGTGTAGAAGTTGCCAAGGATCTGGAACTGTCAGCTATTACAAGAAAAGGGGTAAAGAG 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGTGTAGAAGTTGCCAAGGATCTGGAACTGTCAGCTATTACAAGAAAAGGGGTAAAGAG 479
Query 503 GTTATATGCAAATGCATACCCTGCCAAGGGATAGGATATGTGCAGAAGATAACATCTCGG 562
||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 480 GTTATATGCAAGTGCATACCCTGCCAAGGGATAGGATATGTACAGAAGATAACAACTCGG 539
Query 563 ACGGACATTGAAGTGATGGAAGATTTGGATAATGAACCATCTTGACCTTGAATATGGCCC 622
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 ACGGACATTGAAGTGATGGAAGATTTGGATAATGAACCATCTTGACCTTGAATGTGGCCC 599
Query 623 ATTTTT 628
||||||
Sbjct 600 ATTTTT 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36064279482
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5