BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19240.1
Length=2215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479439 jgi|Araly1|479439|fgenesh2_kg.3__2140__AT3G19240.1 3286 0.0
Ahg491350 jgi|Araly1|491350|fgenesh2_kg.7__783__AT4G33400.1 110 6e-23
> Ahg479439 jgi|Araly1|479439|fgenesh2_kg.3__2140__AT3G19240.1
Length=2103
Score = 3286 bits (1779), Expect = 0.0
Identities = 1992/2095 (95%), Gaps = 13/2095 (1%)
Strand=Plus/Plus
Query 81 TTTTGGCTACTTCTCTCCGATTCTGTTCTTCTTGTAGTAGCTGATCGCATTCCATGGGTA 140
|||| |||||||||||||| ||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 1 TTTT-GCTACTTCTCTCCGTTTCCGTTCTTCTTCTAGTAGCTGATCGAATTCCATGGGTA 59
Query 141 CTTCTCAGAGTCGTGAAGATCGAATCAGCGAATCGGATACAGAATCCGATTCAGATTACT 200
||||||| ||||| ||||||||||||| |||||||||||| || |||||||| |||||||
Sbjct 60 CTTCTCAAAGTCGCGAAGATCGAATCACCGAATCGGATACGGATTCCGATTCTGATTACT 119
Query 201 ATGAAGAAGAAGACGAGGATCAATACGATGACGCGAAGAAGCAAGGATCATCATCTGTTT 260
|||| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 120 ATGACGAAGAAGACGAAGATCAATACGATGACGCGAAGAAGCAAGGATCGTCGTCTGTTT 179
Query 261 CTGGTACAAGACCGTCTGATTCTTCTTCTTCTTCAGGACCAACTGATTCATCGTCTCTCG 320
||||| || |||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 180 CTGGTTCAGGACCGTCTGA---TTCTTCTTCTTCAGGACCATCTGATTCATCGTCTCTCG 236
Query 321 ATATTGAGCAGAAGCTAAAAGCCTTGAAGTTGAAATACCCATCTTCTTCTTCCGTAACAC 380
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 237 ATATTGAGGAGAAGCTAAAAGCCTTGAAGTTGAAATACCCATCTTCTTCTTCCGTAACGC 296
Query 381 CCAAGATGAAGAACGCTGTGAAGCTTTACCGCCATATCGGGGGAAACACACCCAAAGCGA 440
||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 297 TCAAGATGAAGAACGCGGTTAAGCTTTACCGCCATATCGGTGGAAACACACCCAAAGCGA 356
Query 441 AATGGATCGTTTCGGATAAGATGACATCATACAAGTTTGTGAAAACTTCGTCAG-TGGAT 499
|||||||| | | ||||| |||||||| ||||||||||||||||||||| | | | |||
Sbjct 357 AATGGATCATCACTGATAAAATGACATCGTACAAGTTTGTGAAAACTTCGACGGCT-GAT 415
Query 500 GGAGAAGATATTGATGATTATGATGATTGTGAAGAATCAGGTGAAGGAGGTGAGTCTTTT 559
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GGAGAAGATATTGGTGATTATGATGATTGTGAAGAATCAGGTGAAGGAGGTGAGTCTTTT 475
Query 560 TGGTTTCTGGGTGTTGGTACTAAGGTTAAAGCTAGGGTTTCTACGGATATGCAGTTGAAA 619
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 476 TGGTTTCTGGGTGTTGGTTCTAAGGTTAAAGCTAGGGTTTCCACGGATATGCAGTTGAAA 535
Query 620 ATGTTTGGGGATCAACGTAGGGTTGACTTTGTTAGTAATGGTGTTTGGGCTTTGAAGTTC 679
|||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 536 ATGTTTGGGGATCAGCGTAGAGTTGATTTTGTGAGTAATGGTGTTTGGGCTTTGAAGTTC 595
Query 680 TTGACGGATGAGGATTATAGGAAGTTTGTTACTAGGTTTCAGGACTATCTGTTTGAGAAT 739
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTGACGGATGAGGACTATAGGAAGTTTGTTACTAGGTTTCAGGACTATCTGTTTGAGAAT 655
Query 740 GTGTATAAGATCAGGGCAAGTGAGGAGAATA-GAGTTAAAGTGTATGGTAAAGATTTCAT 798
||||||||||||||||||||||||||||| | || ||||||||||||| |||||||||||
Sbjct 656 GTGTATAAGATCAGGGCAAGTGAGGAGAACAGGA-TTAAAGTGTATGGGAAAGATTTCAT 714
Query 799 TGGGTGGGCTAATCCTGAGGCTGCTGATGATTCTATGTGGGAGGATGCTGAAGCTCCACC 858
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGGGTGGGCTAATCCTGAAGCTGCTGATGATTCTATGTGGGAGGATGCTGAAGCTCCACC 774
Query 859 TGAGGAAGAGGAAACTCAGGGGAAGAGGAATACGGATTTGACGGAAGAGTTTGAAGAGGT 918
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 775 TGAGGAAGAGGAAACTCAGGCCAAGAGAAATACGGATTTGACGGAAGAGTTCGAAGAGGT 834
Query 919 GGCTAATGGTGGAGTGCAGAGTTTGACTTTGGGAGCGTTGGATAATTCGTTCTTGGTGAA 978
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 835 GGCTAATGGTGGAGTGCAGAGTTTGACTTTGGGAGCGTTGGATAATTCATTCTTGGTGAA 894
Query 979 TGATTATGGGGTTCAGGTTTATAGGAATATGGAGCGTGGTATTCATGGGAAAGGTGTGTG 1038
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 895 TGATTATGGGGTTCAGGTTTATAGGAATATGGAGCGTGGGATTCATGGGAAAGGTGTGTG 954
Query 1039 CGTGAGATTTGATTCTGGAAACTCAAAGTTCGGATCAGGG-TCAAGCCAGACAACACCGA 1097
||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||| |
Sbjct 955 CGTGAGATTTGATTCTGGAAATTCAAAGTTCGGATC-GGGTTCGAGCCAGACAACACCAA 1013
Query 1098 ACAAGGCTCTTTTGATGAGGGCAGAGACTAATATGATGCTGATGAGTCCAGCTAAACAAG 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ACAAGGCTCTTTTGATGAGGGCAGAGACTAATATGATGCTGATGAGTCCAGCTAAACAAG 1073
Query 1158 GGAAACCTAACTCCACTGGTGTTAAGCAGCTCGATATAGAGTCAGGGAAGATTGTTACTG 1217
||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1074 GGAAACCAAATTCCACTGGTGTTAAGCAGCTCGACATTGAGTCAGGGAAGATTGTTACTG 1133
Query 1218 AATGGAAATTTGAGAAAGACGGGACTGAAATCACGATGAGAGACATAACAAATGATACCA 1277
|||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||||||
Sbjct 1134 AATGGAAATTCGAGAAAGATGGGACTGAAATCATGATGAGGGACATAACAAATGATACCA 1193
Query 1278 AAGGGTCGCAGCTAGATCCATCAGAGTCAACGTTTTTGGGATTGGATGACAATAGGCTGT 1337
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1194 AAGGGTCGCAGCTAGATCCATCAGAGTCTACCTTTTTGGGATTGGATGACAATAGGCTGT 1253
Query 1338 GTCAATGGGACATGAGGGATAGGAGAGGTATAGTGCAGAACATTGACTCTCCCATCTTGG 1397
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 1254 GTCAATGGGACATGAGGGACAGGAGAGGTATAGTGCAGAACATCGAATCTCCCATCTTGG 1313
Query 1398 AATGGACTCAAGGCCATCAGTTCTCTAGAGGAACAAATTTCCAGTGCTTTGCAACTACTG 1457
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1314 AATGGACTCAAGGCCATCAGTTTTCTAGAGGAACAAATTTCCAGTGCTTTGCAACTACTG 1373
Query 1458 GAGATGGGTCAATCGTTGTGGGATCACTTGACGGAAAGATAAGACTTTACTCAAAGACCT 1517
||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||||||
Sbjct 1374 GAGATGGGTCAATTGTTGTGGGATCGCTTGACGGAAAGATAAGGCTGTATTCAAAGACCT 1433
Query 1518 CAATGAGAATGGCAAAAACGGCTTTTCCAGGGCTCGGTTCACCAATTACACATGTGGACG 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 CAATGAGAATGGCAAAAACGGCTTTTCCAGGGCTCGGTTCACCAATTACACATGTGGACG 1493
Query 1578 TTTCTTATGATGGGAAATGGATACTGGGCACCACAGATACGTACTTGGTTCTTATTTGCA 1637
||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1494 TTTCTTATGATGGAAAATGGATATTGGGCACAACAGATACGTACTTGGTTCTTATTTGCA 1553
Query 1638 CCCTTTTCACAGACAAAAATGGTCTGACAAAAACAGGCTTTAGCGGAAGAATGGGAAACA 1697
||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1554 CCCTTTTCACAGACAAAGATGGTCGGACAAAAACAGGATTTAGCGGAAGAATGGGAAACA 1613
Query 1698 AAATACCAGCCCCTAGGCTGCTGAAGCTAACACCACTAGATTCACACTTGGCAGGAAAAG 1757
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 AAATACCAGCGCCGAGGCTGCTGAAGCTAACACCACTAGATTCACACTTGGCAGGAAAAG 1673
Query 1758 ATAATAAGTTTCATGGCGGTCACTTCTCATGGGTAACTGAGAGTGGAAAGCAAGAGAGAC 1817
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||
Sbjct 1674 ATAATAAGTTTCATGGCGGTCATTTCTCATGGGTAACAGAGAGCGGGAAGCAAGAGAGAC 1733
Query 1818 ACATAGTAGCAACAGTGGGGAAATTCAGTGTGATATGGGACTTGGAGCGGGTGAAGAACA 1877
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1734 ATATAGTAGCAACAGTGGGGAAATTCAGTGTAATATGGGACTTGGAGCGGGTGAAGAACA 1793
Query 1878 GTGCACACGAATGCTATAGGAACCAACAAGGACTCAAGAGCTGTTACTGCTACAAGATCT 1937
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GTGCACACGAGTGCTATAGGAACCAACAAGGACTCAAGAGCTGTTACTGCTACAAGATCT 1853
Query 1938 TGTTGAAGGATGAGTCAATTGTTGAGAGCCGATTCATGCACGATAACTTCTCCTTCTCCG 1997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 TGTTGAAGGATGAGTCAATTGTTGAGAGCCGATTCATGCACGATAACTTCTCCTTCTCCG 1913
Query 1998 GTAACAAATCGCCAGAAGCACCGCTTGTGGTTGCCACGCCTTTGAAAGTCAGCTCCATCA 2057
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1914 GTAACAAATCGCCAGAAGCACCGCTTGTGGTTGCCACTCCTTTGAAAGTCAGCTCCATCA 1973
Query 2058 GCCTCTCTGGAAAACGACTTTAAATAACCAGTTTGTATCGTAAA-GCTTTCTTTTGTTTT 2116
|||||||||||||||||||||||| ||| |||||| ||| |||| |||||| |||| |||
Sbjct 1974 GCCTCTCTGGAAAACGACTTTAAAAAAC-AGTTTGAATC-TAAAAGCTTTCCTTTGGTTT 2031
Query 2117 TGTAATGAAATTTGATTGTAGTGTTTGGCTTTTTGTCATCGTGTGAAGGTTTGTG 2171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 TGTAATGAAATTTGATTGTAGTGTTTGGCTTTTTGTCATCGTGTGAAGGTTTGTG 2086
> Ahg491350 jgi|Araly1|491350|fgenesh2_kg.7__783__AT4G33400.1
Length=2227
Score = 110 bits (59), Expect = 6e-23
Identities = 65/68 (96%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 782 TATGGTAAAGATTTCATTGGGTGGGCTAATCCTGAGGCTGCTGATGATTCTATGTGGGAG 841
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 738 TATGGGAAAGATTTCATTGGGTGGGCTAATCCTGAGGCTGCTGATGATTCCATGTGGGAA 797
Query 842 GATGCTGA 849
||||||||
Sbjct 798 GATGCTGA 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83379546305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5