BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19250.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904903 jgi|Araly1|904903|Al_scaffold_0003_2031 1652 0.0
Ahg479449 jgi|Araly1|479449|fgenesh2_kg.3__2150__AT3G19330.2 481 7e-135
Ahg479439 jgi|Araly1|479439|fgenesh2_kg.3__2140__AT3G19240.1 84.2 2e-15
> Ahg904903 jgi|Araly1|904903|Al_scaffold_0003_2031
Length=1083
Score = 1652 bits (894), Expect = 0.0
Identities = 1020/1083 (94%), Gaps = 0/1083 (0%)
Strand=Plus/Plus
Query 388 ATGCCGCACTGTTTTACCTTCAAGCCAGCTTCTCCAGAGGGCTCTCTCGGCGACGACCAT 447
||||||||||||||||||||||||||| ||||| | |||| |||||||| |||||||| |
Sbjct 1 ATGCCGCACTGTTTTACCTTCAAGCCACCTTCTGCGGAGGCCTCTCTCGCCGACGACCCT 60
Query 448 CTTCCCCATCCTTCCCCAGAGGGAAGTGTTGCCTCCACTTTTAACCTCAGCCACGAGTTA 507
||||||||| |||| |||||||| ||||| ||||||||||||||| |||||| ||||||
Sbjct 61 CTTCCCCATTCTTCTCCAGAGGGTAGTGTGGCCTCCACTTTTAACATCAGCCTCGAGTTG 120
Query 508 GCTCATGCTTTTCAAACCCCGTCGTACCACGACATACGTTCACGGCTTCTTGTTATTGAC 567
||||| |||||||||||| | || ||||| || ||||||||||||||||||| |||||
Sbjct 121 GCTCACGCTTTTCAAACCTCTTCCTACCATGATATACGTTCACGGCTTCTTGCGGTTGAC 180
Query 568 CCAACACAAGAAAATCTCGAGCTGTTTCTTTCTCAAGAGCTCAGACCAAACAACGAATCC 627
||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |
Sbjct 181 CCAACACAAGAAAATCTCGAGCTGTTTCTCTCTCAAGAGCTCAAACCAAACAATGAATGC 240
Query 628 GTTCAAGAAGCTCTTAGTCTTAGACACGCCAAGCAAACTACACTTACCAATCTTGTCTCT 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 GTTCAAGAAGCTCTTAGTCTTAGACACGCCAAGCAAACTACACTTACCAATCTTATCTCC 300
Query 688 ACTTACTTCCAACACAGCGAAGACGCCACCCGATTTTGCTTGAATCTTTACCAAAACGTC 747
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 301 ACTTACTTCCAACACAGCGAAGACGCTACCCGCTTTTGCTTGAATCTTTACCAAAACGTC 360
Query 748 CACAGTGCTCGCTGCCACCTCTACACACCCCTCTTAGACCTCTTCAATATCTTTCCCCGT 807
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 361 CACAGTGCTCGCTGCCACCTCTACACACCCCTCTTAGACCTCTTCAAAATCTTTCCCCCT 420
Query 808 GATTCCCATTCCGCAATTGACGAGTCCTTCTGTAACTTAGCATTCGACGTTTTTCTTAAG 867
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 421 GATTCCCATTCCGCCATTGACGAGTCCTTCTGTAACTTAGCCTTCGATGTTTTCCTTAAG 480
Query 868 CTTGACACGTTTGAAAACCCTTTCGCATCTCCTGAATCTCACAGCTTTCAAGACACCCAA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTGACACGTTTGAAAACCCTTTCGCATCTCCTGAATCTCACAGCTTTCAAGACACCCAA 540
Query 928 TTATGCTTTTATCAGCTGGCTGACAAGCTGGACACCCGTATTCGTAAGTCTAAGTCACGG 987
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 TTATGCTTTTATCAGCTGGCTGACAAGCTGGACACCCGTATCCGTAAGTCTAAGTCACGG 600
Query 988 GTCCGCCTCCTCCATCATGCCACAGCTGGTTCTGCCTTATGTCTTGTAACTGCTGTTGTT 1047
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 GTCCGCCTCCTCCATCATGCCACAGCTGGTTCTGCCTTATGTCTTGTTACTGCTGTTGTT 660
Query 1048 GTGGTTGCTGCTTCTGCGGCATTTATCGCATATCATGCACTTCCCACCATTCTTGTTGTT 1107
| |||||||||||||||||| |||||||| |||||||||||||| ||| || ||||||||
Sbjct 661 GCGGTTGCTGCTTCTGCGGCTTTTATCGCCTATCATGCACTTCCAACCCTTGTTGTTGTT 720
Query 1108 GCAGGTCCCTTGTGCACTCCCTACCTCCCTCACAGTTTCAAGAAGAAGGAGTTGTCTAAC 1167
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 721 GCAGGTCCCTTGTGCACTCCCTACCTCCCTCACAGTTTCAAGAAGGAGGAGTTATCTAAC 780
Query 1168 ATTTTTCAGCTAAATGTTGCTGCCAAGGGTACTTTTGCGCTCAACAAAGATCTTGACACC 1227
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATTTCTCAGCTAAATGTTGCTGCCAAGGGTACTTTTGCGCTCAACAAAGATCTTGACACC 840
Query 1228 ATTGACCGTCTTGTCTCCCGTTTGCACACGGGGGTTAAAAACGACAAGCTTCTTATTCGC 1287
||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 841 ATTGACCGTCTTGTCTCCCGTTTGCACACGGGGATTGAAAACGACAAGCTTCTCATTCGA 900
Query 1288 CTTGGATTAGAGAGGGGGAGGGACGTGTATACAATTCCGGAGTTTGTGAAACAGCTTCGA 1347
|||||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct 901 CTTGGATTGGAGAGGGGGAGGGACGTGTATTCAGTTCAGGAGTTTGTGAAACAGCTTCGC 960
Query 1348 AAGAGCCATGTTAACCACACCCATCAACTCGAGGTTCTTGTGGATCATATATGTCGTTGG 1407
|||||||| ||||||| |||||| |||||| ||||||||| ||||||||| |||||||||
Sbjct 961 AAGAGCCACGTTAACCTCACCCAGCAACTCAAGGTTCTTGAGGATCATATTTGTCGTTGG 1020
Query 1408 TTCACTAATGTTAACAAATCCAGATCGTTGCTCCTTAAAGAGATCCTTCGTCCCCAAACG 1467
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTCACTAACGTTAACAAATCCAGATCGTTGCTCCTTAAAGAGATCCTTCGTCCCCAAACG 1080
Query 1468 TAA 1470
|||
Sbjct 1081 TAA 1083
> Ahg479449 jgi|Araly1|479449|fgenesh2_kg.3__2150__AT3G19330.2
Length=1155
Score = 481 bits (260), Expect = 7e-135
Identities = 467/562 (83%), Gaps = 34/562 (6%)
Strand=Plus/Plus
Query 482 CCACTTTTAACCTCAGCCACGAGTTAGCTCATGCTTTTCAAACCCCGTCGTACCACGACA 541
|||| ||||||||||||| ||||| ||||| |||||||||||||| || |||||||||
Sbjct 220 CCACGTTTAACCTCAGCCGTGAGTTGGCTCACGCTTTTCAAACCCCTTCATACCACGACG 279
Query 542 TACGTTCACGGCTT--C-TTGTTATTGA--C--C-C-A-A-CA-CA--AG-------AA- 579
|||||||| || || | | ||| |||| | | | | | || || || ||
Sbjct 280 TACGTTCAAGGGTTCACGTGGTTGTTGACCCTACACAACATCATCATCAGTACATCCAAC 339
Query 580 -A-ATCTCGAGCTGTTTCTTTCTCAAGAGCT-CAGACCAAACAACGAATCCGTTCAAGAA 636
| || | |||||| || ||||||||| ||| || |||||| || |||| |||||||||
Sbjct 340 CAGATATTGAGCTGCTTATTTCTCAAGTGCTCCA-ACCAAATAAAGAATGTGTTCAAGAA 398
Query 637 GCTCTTAGTCTTAGACACGCCAAGCAAACTACACTTACCAATCTTGTCTCTACTTACTTC 696
| | || ||||||||| |||||||||||||||||||||||| || || |||||||||
Sbjct 399 G--C-TA---TTAGACACGTCAAGCAAACTACACTTACCAATCTCGTTTCCACTTACTTC 452
Query 697 CAACACAGCGAAGACGCCACCCGATTTTGCTTGAATCTTTACCAAAACGTCCACAGTGCT 756
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 453 CAACACAGCGAAGACGCTACCCGCCTTTGCTTGAATCTTTACCAAAACGTCCACAGTGCT 512
Query 757 CGCTGCCACCTCTACACACCCCTCTTAGACCTCTTCAATATCTTTCCCCGTGATTCCCAT 816
||| ||||||||||||||| ||||||||||||||||| | ||||||| ||||| | ||
Sbjct 513 CGCCACCACCTCTACACACCTCTCTTAGACCTCTTCAACAGCTTTCCCGGTGATACACAC 572
Query 817 TCCGCAATTGACGAGTCCTTCTGTAACTTAGCATTCGACGTTTTTCTTAAGCTTGACACG 876
|||| |||||||||||| | |||||| | ||||| ||||||||||||||||| ||||||
Sbjct 573 GCCGCCATTGACGAGTCCCTATGTAACCTGGCATTTGACGTTTTTCTTAAGCTCGACACG 632
Query 877 TTTGAAAACCCTTTCGCATCTCCTGAATCTCACAGCTTTCAAGACACCCAATTATGCTTT 936
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 633 TTTGAAAACCCTTTCTCATCTCCTGAATCTCACAGCTTTCAAGACACCCAACTATGCTTC 692
Query 937 TATCAGCTGGCTGAC-AAGCTGGACACCCGTATTCGTAAGTCTAAGTCACGGGTCCGCCT 995
| |||||| || || ||||||| ||| |||| ||||||| |||||||||||||||
Sbjct 693 TCCCAGCTGAA-GAATAATCTGGACAGACGTCTTCGCAAGTCTAGGTCACGGGTCCGCCT 751
Query 996 CCTCCATCATGCCACAGCTGGT 1017
| |||| |||||||||||||||
Sbjct 752 CATCCACCATGCCACAGCTGGT 773
Score = 436 bits (236), Expect = 2e-121
Identities = 313/351 (89%), Gaps = 2/351 (1%)
Strand=Plus/Plus
Query 1111 GGTCCCTTGTGCACTCCCTACCTCCCTCACAGTTTCAAGAAGAAGGAGTTGTCTAACATT 1170
||||||||||||| |||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 771 GGTCCCTTGTGCAGTCCCTATCTTCCTCACAGTTTCAAGAAGAAGGAGTTAACTAACATT 830
Query 1171 TTTCAGCTAAATGTTGCTGCCAAGGGTACTTTTGCGCTCAACAAAGATCTTGACACCATT 1230
| |||||| |||| |||| ||||||||||||||| ||||||||||||||| |||||||||
Sbjct 831 TGTCAGCTCAATGCTGCTTCCAAGGGTACTTTTGTGCTCAACAAAGATCTGGACACCATT 890
Query 1231 GACCGTCTTGTCTCCCGTTTGCACACGGGGGTTAAAAACGACAAGCTTCTTA-TTCGCCT 1289
|||||||||||||||||||||||||| ||| || || ||||||||| | ||| |||| ||
Sbjct 891 GACCGTCTTGTCTCCCGTTTGCACACTGGGATTGAATACGACAAGCAT-TTAATTCGGCT 949
Query 1290 TGGATTAGAGAGGGGGAGGGACGTGTATACAATTCCGGAGTTTGTGAAACAGCTTCGAAA 1349
||||||||||||||||||||||||| || |||||| |||| |||||||||||||||| ||
Sbjct 950 TGGATTAGAGAGGGGGAGGGACGTGCATTCAATTCAGGAGATTGTGAAACAGCTTCGCAA 1009
Query 1350 GAGCCATGTTAACCACACCCATCAACTCGAGGTTCTTGTGGATCATATATGTCGTTGGTT 1409
|||||| |||||| |||||| |||||| ||| ||||| ||||||||||||| ||||||
Sbjct 1010 GAGCCACCTTAACCTCACCCAGCAACTCAAGGATCTTGAAGATCATATATGTCTTTGGTT 1069
Query 1410 CACTAATGTTAACAAATCCAGATCGTTGCTCCTTAAAGAGATCCTTCGTCC 1460
|||||| ||||||||| | ||||||||||||||||||||||||| || |||
Sbjct 1070 CACTAACGTTAACAAAGCTAGATCGTTGCTCCTTAAAGAGATCCATCTTCC 1120
> Ahg479439 jgi|Araly1|479439|fgenesh2_kg.3__2140__AT3G19240.1
Length=2103
Score = 84.2 bits (45), Expect = 2e-15
Identities = 74/86 (86%), Gaps = 10/86 (12%)
Strand=Plus/Minus
Query 166 AGTAATTGTGCATGAATCGGCTCTCAACAATTGACTCATGACACTCATCCTTCAACAAGA 225
||| || ||||||||||||||||||||| | | | || ||||||||||||||||||
Sbjct 1901 AGTTATCGTGCATGAATCGGCTCTCAAC-A---A-T--TG--ACTCATCCTTCAACAAGA 1851
Query 226 TCTTGTAGCAGTAACAGCTCTTTGAG 251
|||||||||||||||||||||| |||
Sbjct 1850 TCTTGTAGCAGTAACAGCTCTT-GAG 1826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5