BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19260.1
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318682 jgi|Araly1|318682|fgenesh1_pm.C_scaffold_3001698 1363 0.0
> Ahg318682 jgi|Araly1|318682|fgenesh1_pm.C_scaffold_3001698
Length=840
Score = 1363 bits (738), Expect = 0.0
Identities = 805/838 (96%), Gaps = 2/838 (0%)
Strand=Plus/Plus
Query 311 ATGGAGGTCTGGCATTTCCAGATTGCTGTCTATTTCGCTTTCGGATTCTTCTTCTTGAGG 370
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGTGTGGCATTTCCAGATTGCTGTCTATTTCGCTTTCGGATTCTTCTTCTTGAGG 60
Query 371 CTTGTCCTCGATAGATACGTCTTTCAAAGGATAGCTCTTTGGCTTTTGAGTACTGGTTCT 430
||| |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 61 CTTTTCCTCGATAGATTCGTCTTTCAAAGGATAGCTGTTTGGCTTTTGAGTACCGGTTCT 120
Query 431 GCTCCGATTAAATTGAATGATGCTGCTACTCGGGCAAAAATCGTCAAATGCAAAGAGTCC 490
||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 121 TCTCCGGTTAAAATGAATGATGCTACTACTCGGGCAAAAATCGTCAAATGCAAGGAGTCT 180
Query 491 TTGTGGAAATTGTTGTATTATGCTGCTTGTGACTTTTTCGTTCTACAAGTCATTTATCAC 550
|||||||||||||||||||| |||| |||||||||||||||||| |||||| ||||||||
Sbjct 181 TTGTGGAAATTGTTGTATTACGCTGGTTGTGACTTTTTCGTTCTTCAAGTCGTTTATCAC 240
Query 551 GAGCCGTGGGCTAGAGATATCAAACTCTACTTCCACGGTTGGCCTAATCAAGAGTTGAAG 610
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 241 GAGCCGTGGGCTAGAGATATCAAACTCTACTTCGACGGTTGGCCAAATCAAGAGTTGAAG 300
Query 611 CTTTCAATAAAGCTTTACTATATGTGCCAGTGCGGTTTTTATGTGTATGGTGTGGCTGCG 670
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CTTTCAATAAAGCTTTACTATATGTGCCAGTGCGGGTTTTATGTGTATGGTGTGGCTGCG 360
Query 671 TTGCTTGCATGGGAGACAAGAAGAAAGGATTTTGCTGTCATGATGTCTCACCATGTAATT 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGCTTGCATGGGAGACAAGAAGAAAGGATTTTGCTGTCATGATGTCTCACCATGTAATT 420
Query 731 ACAATCATCCTGCTTAGCTACTCCTACTTAACCAGTTTTTTCCGGATTGGAGCAATCATC 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACAATCATCCTGCTTAGCTACTCCTACTTAACCAGTTTTTTCCGGATTGGAGCAATCATC 480
Query 791 CTAGCCCTTCATGATGCAAGTGATGTCTTTATGGAAACTGCTAAAATTTTCAAGTACTCT 850
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 481 CTAGCCCTTCATGATGCAAGTGACGTGTTTATGGAAACTGCTAAAATTTTCAAGTACTCT 540
Query 851 GAAAAAGAATTTGGAGCAAGTGTATGTTTTGCATTATTTGCTGTCTCCTGGCTATTGCTA 910
||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 541 GAAAAAGAATTTGGAGCAAGTGTGTGTTTTGCACTATTTGCTCTCTCCTGGCTATTGCTA 600
Query 911 CGGTTGATATACTTCCCATTTTGGATCATCAGGGCCACGAGCATTGAACTCCTGGATTAT 970
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 CGGTTGATATACTTCCCATTTTGGATCATCTGGGCCACGAGCATTGAACTCCTGGATTAT 660
Query 971 TTGGATATGACATCAGCTGAAGGCAC-ATTGATGTACTATTCTTTCAACACTATGTTACT 1029
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 661 TTGGATATGACATCAGCTGAAGGCACGATC-ATGTACTATTCTTTCAACACAATGTTACT 719
Query 1030 AATGCTGCTTGTTTTCCACATATATTGGTGGTATCTCATTTGTGCCATGATTGTAAGACT 1089
||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 720 GATGCTTCTCGTTTTCCACATATATTGGTGGTATCTTATATGTGCCATGATTGTAAGACT 779
Query 1090 ACTTAAAAACAGAGGAAAAGTTGGAGAAGACATAAGATCCGATTCAGAGGATGATGAT 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACTTAAAAACAGAGGAAAAGTTGGAGAAGACATAAGATCCGATTCAGAGGATGATGAT 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5