BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19270.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479442 jgi|Araly1|479442|fgenesh2_kg.3__2143__AT3G19270.1 2355 0.0
Ahg915575 jgi|Araly1|915575|Al_scaffold_0008_326 148 1e-34
> Ahg479442 jgi|Araly1|479442|fgenesh2_kg.3__2143__AT3G19270.1
Length=1627
Score = 2355 bits (1275), Expect = 0.0
Identities = 1426/1497 (95%), Gaps = 17/1497 (1%)
Strand=Plus/Plus
Query 112 TAATAATCGATGGCTGAAATTTGGTTCTTGGTTGTACCAATCCTCATCTTATGCTTGCTT 171
|||||||||||||||||||||||||| ||||||||||||| |||||| || |||||||||
Sbjct 69 TAATAATCGATGGCTGAAATTTGGTTATTGGTTGTACCAAGCCTCATTTTTTGCTTGCTT 128
Query 172 TTGGTAAGAGTGATTGTTTCAAAGAAGAAAAAGAACAGTAGAGGTAAGCTTCCTCCTGGT 231
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 129 TTGGTAAGAGTGATTGTTTCAAAGAAGAATAAGAACAGTAGAGGTAAGCTTCCTCCTGGT 188
Query 232 TCCATGGGATGGCCTTACTTAGGAGAGACTCTACAACTCTATTCACAAAACCCCAATGTT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 TCCATGGGATGGCCTTACTTAGGAGAGACTCTACAACTCTATTCACAAAACCCCAATGTT 248
Query 292 TTCTTCACCTCCAAGCAAAAGAGATATGGAGAGATATTCAAAACCCGAATCCTCGGCTAT 351
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 TTCTTTACCTCCAAGCAAAAGAGATATGGAGAGATATTCAAAACCCGAATCCTCGGCTAT 308
Query 352 CCATGCGTGATGTTGGCTAGCCCTGAGGCTGCGAGGTTTGTACTTGTGACTCATGCCCAT 411
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 309 CCATGCGTGATGTTGGCTAGCCCTGAGGCTGCGAGGTTTGTCCTTGTGACTCATGCCCAT 368
Query 412 ATGTTCAAACCAACTTATCCGAGAAGCAAAGAGAAGCTGATAGGACCCTCTGCACTCTTT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ATGTTCAAACCAACTTATCCGAGAAGCAAAGAGAAGCTGATAGGACCCTCTGCACTCTTT 428
Query 472 TTCCACCAAGGAGATTATCATTCCCATATAAGGAAACTTGTTCAATCCTCTTTCTACCCT 531
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 429 TTTCACCAAGGAGATTATCATTCCCATATAAGGAAACTTGTTCAATCTTCTTTATACCCT 488
Query 532 GAAACCATCCGTAAACTCATCCCTGATATCGAGCACATTGCCCTTTCTTCCTTACAATCT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GAAACCATCCGTAAACTCATCCCTGATATCGAGCACATTGCCCTTTCTTCCTTACAATCT 548
Query 592 TGGGCCAATATGCCGATTGTCTCCACCTACCAGGAGATGAAGAAGTTCGCCTTTGATGTG 651
||||||||||||| |||||||| ||||||||||||||||||||||| || || ||||||
Sbjct 549 TGGGCCAATATGCATATTGTCTCTACCTACCAGGAGATGAAGAAGTTTGCGTTCGATGTG 608
Query 652 GGTATTCTAGCCATATTTGGACATTTGGAGAGTTCTTACAAAGAGATCTTGAAACATAAC 711
|||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 609 GGTATTCTAGCCATTTTTGGGCATTTGGAGTGTTCTTACAAAGAGATCTTGAAACATAAT 668
Query 712 TACAATATTGTGGACAAAGGCTACAACTCTTTCCCCATGAGTCTCCCCGGAACATCTTAT 771
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 669 TACAATATTGTGGACAAAGGCTACAACTCTTTTCCCATGAGTATCCCCGGAACATCTTAT 728
Query 772 CACAAAGCTCTCATGGCGAGAAAGCAGCTAAAGACGATAGTAAGCGAGATTATATGCGAA 831
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 729 CACAAAGCTCTCATGGCGAGAAAGCGGCTAAAGACGATAGTAAGCGAGATTATACGCGTA 788
Query 832 AGAAGAGAGAAAAGGGCCTTGCAAACGGACTTTCTTGGTCATCTACTCAACTTCAAGAAC 891
|||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 789 AGAAGAGAGAAAAGGGTCTTGCAAACGGACTTTCTCGGTCATCTGCTCAACTTCAAGGAC 848
Query 892 GAAAAAGGTCGTGTGCTAACCCAAGAACAGATTGCAGACAACATCATCGGAGTCCTTTTC 951
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GAAAAAGGTCGTGTTCTAACCCAAGAACAGATTGCAGACAACATCATCGGAGTCCTTTTC 908
Query 952 GCCGCACAGGACACGACAGCTAGTTGCTTAACTTGGATTCTTAAGTACTTACATGATGAT 1011
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GCCGCACAAGACACGACAGCTAGTTGCTTAACTTGGATTCTTAAGTACTTACATGATGAT 968
Query 1012 CAGAAACTTCTAGAAGCTGTTAAGGCTGAGCAAAAGGCTATATATGAAGAAAACAGTAGA 1071
||||| |||||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 969 CAGAAGCTTCTAGAGGCTGTTAAGGCTGAGCAAAGGGCAATATATGAAGAAAACAGTAGA 1028
Query 1072 GAGAAGAAACCTTTAACATGGAGACAAACGAGGAATATGCCACTGACACATAAGGTTATA 1131
||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1029 GAGAAGAAATCTTTAACATGGGGACAAACGAGGAATATGCCACTAACACATAAGGTTATA 1088
Query 1132 GTTGAAAGCTTGAGGATGGCAAGCATCATATCCTTCACATTCAGAGAAGCAGTGGTTGAT 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GTTGAAAGCTTGAGGATGGCAAGCATCATATCCTTCACATTCAGAGAAGCAGTGGTTGAT 1148
Query 1192 GTTGAATATAAGGGATATTTGATACCTAAGGGATGGAAAGTGATGCCACTGTTTCGGAAT 1251
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1149 GTTGAATATAAGGGATATTTGATACCTAAGGGATGGAAAGTGATGCCACTATTTCGGAAT 1208
Query 1252 ATTCATCACAATCCGAAATATTTTTCAAACCCTGAGGTTTTCGACCCATCTAGATTCGAG 1311
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1209 ATTCATCACAATCCGAAATATTTTTCAAACCCTGAGGTTTTCGATCCATCTAGATTTGAG 1268
Query 1312 GTAAATCCGAAGCCGAATACATTCATGCCTTTTGGAAGTGGAGTTCATGCTTGTCCCGGG 1371
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1269 GTGAATCCGAAGCCGAATACATTCATGCCATTTGGAAGTGGAGTTCATGCTTGTCCCGGG 1328
Query 1372 AACGAACTCGCCAAGTTACAAATTCTTATATTTCTCCACCATTTAGTTTCCAATTTCCGA 1431
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1329 AACGAACTCGCCAAGTTACAGATTCTTATATTTCTCCACCATTTAACTTCCAATTTCCGA 1388
Query 1432 TGGGAAGTGAAGGGAGGAGAGAAAGGAATACAGTACAGTCCATTTCCAATACCTCAAAAC 1491
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1389 TGGGAAGTGAAGGGAGGCGAGAAAGGAATACAGTACAGTCCATTTCCGATACCTCAAGAC 1448
Query 1492 GGTCTTCCCGCTACATTTCGTCGACATTCTCTTTAGTTCCTTA---AA-CC-T-----T- 1540
||||||||||||||||||||||||||||||||||||||| ||| || || | |
Sbjct 1449 GGTCTTCCCGCTACATTTCGTCGACATTCTCTTTAGTTCTTTAGTTAAACCATCAAAGTC 1508
Query 1541 TGT-AGTAATCTTTGT-TGTAGTTAGCCAAA-TCTAATCCAAATTCGATATAAAAAA 1594
| | | |||||||||| | || ||||||||| | ||||| ||||||||| |||||||
Sbjct 1509 TATTACTAATCTTTGTCT-TAATTAGCCAAAAT-TAATCTAAATTCGAT-TAAAAAA 1562
Score = 75.0 bits (40), Expect = 2e-12
Identities = 40/40 (100%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1646 ACATGTAACAACTATGATGAAGTAAAATGTCGATTCCGGT 1685
||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 ACATGTAACAACTATGATGAAGTAAAATGTCGATTCCGGT 1627
> Ahg915575 jgi|Araly1|915575|Al_scaffold_0008_326
Length=1392
Score = 148 bits (80), Expect = 1e-34
Identities = 174/218 (80%), Gaps = 12/218 (6%)
Strand=Plus/Plus
Query 1156 ATCATATCCTTCACATTCAGAGAAGCAGTGGTTGATGTTGAATA-TAAGGGATATTTGAT 1214
||| |||| |||||||| |||||||| || | ||||| ||||| || |||||||||||
Sbjct 1024 ATCTTATCTTTCACATTTAGAGAAGCTGTCGAAGATGTCGAATACGAA-GGATATTTGAT 1082
Query 1215 ACCTAAGGGATGGAAAGTGA-TGCCACTGTTTC-GGAATATTCATCACAAT-CCGAAATA 1271
||| |||||||||||||| | |||| || ||| | ||||||||||||||| | || |||
Sbjct 1083 ACCAAAGGGATGGAAAGT-ATTGCCGCT-ATTCAGAAATATTCATCACAATGCTGATATA 1140
Query 1272 TTTTTC-AAACCCTGAGGTTTTCGACCCATCTAGATTCGAGGTAAATCCGAAGCCGAATA 1330
||||| | || || ||||| || || |||||||| || ||||| |||||||
Sbjct 1141 -TTTTCGGATCCGGGA-AAATTCGATCCGTCGAGATTCGAAGTTGCGCCGAAACCGAATA 1198
Query 1331 CATTCATGCCTTTTGGAAGTGG-AGTTCATGCTTGTCC 1367
|||||||||||||||||||||| | ||||| |||||||
Sbjct 1199 CATTCATGCCTTTTGGAAGTGGGA-TTCATTCTTGTCC 1235
Score = 84.2 bits (45), Expect = 3e-15
Identities = 207/284 (73%), Gaps = 16/284 (6%)
Strand=Plus/Plus
Query 220 CTTCCTCCTGGTTCCATGGGATGGCCTTACTTAGGAGAGAC-TCTACAACTCTATTCACA 278
|||||||| || | ||||| | |||||| | || || || | | ||||| || |||||
Sbjct 106 CTTCCTCCGGGAACAATGGGTTATCCTTACGTCGGCGAAACAT-TCCAACTTTACTCACA 164
Query 279 AAACCCCAATGTTTTCTTCACCTCCAAGCAAAAG-AGATATGGAGAGATATTCAAAAC-C 336
| |||| ||||| |||||| | | || | | || ||||| ||| | | ||||| || |
Sbjct 165 AGACCCTAATGTGTTCTTCGCAGCAAAAC-AGAGAAGATACGGATCGGTGTTCAAGACTC 223
Query 337 -CGAATCCTCGGCTATCCATGCGTGATGTTGGCTAGCCCTGAGGCTGCGAGGTTTGTACT 395
| || | || | |||||| |||||| | | |||||||| || |||| |||||| |
Sbjct 224 ATGTAT--TGGGATGTCCATGTGTGATGATCTCAAGCCCTGAAGCAGCGAAATTTGTA-T 280
Query 396 T-GTGACTCATG-CCCATATGTTCAAACCAACTTATCC-GAGAAGCAAAGAGAAGCTGAT 452
| || || || | | ||| |||| ||||| |||| ||| | | || ||||||| | || |
Sbjct 281 TGGTTAC-CAAGTCTCATTTGTTTAAACCGACTTTTCCGGCG-AGTAAAGAGAGGATGCT 338
Query 453 AGG-ACCCTCTGCACTCTTTTTCCACCAAGGAGATTATCATTCC 495
|| | | ||| |||||||||||||||||||||||||||||
Sbjct 339 TGGAAAAC-AAGCAATCTTTTTCCACCAAGGAGATTATCATTCC 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5