BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19290.3
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479444 jgi|Araly1|479444|fgenesh2_kg.3__2145__AT3G19290.1 2606 0.0
> Ahg479444 jgi|Araly1|479444|fgenesh2_kg.3__2145__AT3G19290.1
Length=1791
Score = 2606 bits (1411), Expect = 0.0
Identities = 1696/1825 (93%), Gaps = 54/1825 (3%)
Strand=Plus/Plus
Query 1 GCTCGTGTCGAGGCGGCAGCAACACACTTGTCGTCTCTCCCTGTAGCTTCTCTGGAGTTT 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 GCTCGTGTCGAGGCGGCAGCAACACACTTGTCGTCTCTCCCTGTAACTTCTCTGGAGTTT 60
Query 61 TCGCAGTCACGAATCTTGTTTTGAAGAAA-TTAATTT-G-AACAAGGGTTTTAGGGCTTG 117
||||||||||||||||||||||||||||| ||||||| | || |||||||||||||||||
Sbjct 61 TCGCAGTCACGAATCTTGTTTTGAAGAAATTTAATTTGGTAAGAAGGGTTTTAGGGCTTG 120
Query 118 GATGCTTTGTTTTCATTGAAAAAGAAGTAGAAGGAGTGTATACAAGGATTATGGGAACTC 177
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 121 GATGCTTTGTTTTCATTGAAGAAGAAGTACAAGGAGTGAATACAAGGATTATGGGAACTC 180
Query 178 ACATCAATTTCAACAACTTAGGAGGTGGTGGTCATCCTGGAGGGGAAGGGAGTAGTAACC 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 ACATCAATTTCAACAACTTAGGAGGTGGTGGTCATCCTGGAGGGGAAGGGAGTAGTAATC 240
Query 238 AGATGAAGCCAACGGGTA--G-TGTCATGCCCTTGGCTAGGCAGTCCTCGGTCTACTCCC 294
|||||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||||
Sbjct 241 AGATGAAGCCAACGGGTAGTGTTGTCATGCCCTTGGCGAGGCAGTCCTCGGTCTATTCCC 300
Query 295 TTACCTTTGATGAGTTACAGAACACACTAGGTGGACCGGGAAAAGATTTCGGGTCGATGA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTACCTTTGATGAGTTACAGAACACACTAGGTGGACCGGGAAAAGATTTCGGGTCGATGA 360
Query 355 ACATGGATGAACTCCTGAAGAGCATATGGACTGCTGAGGAAGCTCAGGCCATGGCCATGA 414
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 ACATGGATGAACTCCTGAAGAGCATATGGACTGCTGAGGAAGCTCAGGGCATGGCCATGA 420
Query 415 CTTCTGCGCCAGCTGCTACAGCGGTAGCGCAACCTGGTGCTGGTATCCCACCCCCAGGTG 474
||||| || ||||||||||||||| ||||||||| ||||||||||| ||| ||||
Sbjct 421 CTTCTTCGTCAGCTGCTACAGCGGCAGCGCAACCCGGTGCTGGTAT------CCCTGGTG 474
Query 475 GGAATCTCCAGAGGCAAGGTTCGTTGACGTTGCCTAGAACAATTAGTCAGAAGACTGTTG 534
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 475 GGAATCTCCAGAGGCAAGGCTCGTTGACGTTGCCTAGAACGATTAGTCAGAAGACTGTTG 534
Query 535 ATGAGGTGTGGAAATGTTTGATCACCAAGGATGGTAATAT-GGAAGGTAGCAGCGGAGGC 593
|||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 535 ATGAGGTGTGGAAATGTTTGATCACCAAAGATGGTAATATGGGAA-GTAGCAGCGGAGGC 593
Query 594 GGTGGTGAGTCGAATGTGCCTCCTGGAAGGCAACAGACTTTAGGGGAAATGACACTTGAA 653
|||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 594 GGTGGTGAGTCGAATGCGCTTCCTGGGAGGCAACAGACTTTAGGGGAAATGACACTTGAA 653
Query 654 GAATTTCTGTTCCGTGCTGGGGTTGTAAGAGAAGATAACTGTGTTCAACAGATGGGTCAG 713
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 654 GAGTTTCTGTTCCGTGCTGGGGTTGTAAGAGAAGATAACTGTGCTCAACAGATGGGTCAG 713
Query 714 GTCAACGGAAACAAT---AACAATGGGTTTTATGGTAACAGCACTGCTGCTGGCGGCTTA 770
||||| ||||| ||| ||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 714 GTCAATGGAAATAATAACAACAACGGGTTTTATGGTAACGGCAATGCTGCTGGCGGCTTT 773
Query 771 GGTTTTGGATTTGGTCAGCCAAATCAAAACAGCATAACATTCAATGGTACTAATGATTCT 830
||||||||||||| ||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct 774 GGTTTTGGATTTGATCAGCCAAATCAAGACAGCATATCATTCAATGGTAATAATGATTCT 833
Query 831 ATGATCTTGAATCAGCCACCTGGTTTAGGGCTCAAAATGGGTGGaacaatgcagcagcaa 890
|||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 834 ATGATCATGAATCAGCCATCTGGTTTAGGGCTCAAAGTGGGTGGAACAATGCAGCAGCAG 893
Query 891 caacaacaacagcag---ttgcttcagcagcaacaacagcagatgcagcagctgaatcag 947
||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 894 CAACAACAACAACAGTTATTGCAGCAGCAGCAACAACAGCAGTTGCAGCAGCTGAATCAG 953
Query 948 cctcatccacagcagcGGCTGCCTCAAACCATTTTTCCTAAACAAGCAAACGTAGCATTT 1007
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 954 CCTCATCCGCAGCAGCGGCTGCCTCAAATCATTTTTCCTAAACAAGCAAACGTAGCATTT 1013
Query 1008 TCTGCGCCTGTGAATATAACCAACAAGGGTTTTGCTGGGGCTGCAAATAATTCTATCAAC 1067
||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1014 TCTTCGCCTGTGAATATAGTCAACAAGGGTTTTGCTGGGGCTGCAAATAATTCCATCAAC 1073
Query 1068 AATAATAATGGATTAGCTAGTTACGGAGGAACCGGGGTCACTGTTGCAGCAACTTCTCCA 1127
||||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||
Sbjct 1074 AATAATAATGGATTAGCTAATTTCGGAGGAACTGGGGTTACTGTTGCAGCAACTTCTCCA 1133
Query 1128 GGAACAAGCAGCGCAGAAAATAATTCTTTATCACCAGTTCCGTATGTGCTTAATCGAGGA 1187
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1134 GGGACAAGCAGCGCAGAAAATAATTCTTTATCACCAGTTCCATATGTGCTTAATCGAGGA 1193
Query 1188 CGAAGAAGCAATACAGGTCTAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAG 1247
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 CGAAGAAGCAATACGGGGCTAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAG 1253
Query 1248 AATCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGGCTTATACATTGGAACTGGAA 1307
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AACCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGGCTTATACATTGGAACTGGAA 1313
Query 1308 GCCGAAATTGAAAAGCTCAAGAAAACGAATCAAGAACTGCAGAAAAAACAGGCTGAAATG 1367
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GCTGAAATTGAAAAGCTCAAGAAAACGAATCAAGAACTGCAGAAAAAACAGGCTGAAATG 1373
Query 1368 GTGGAAATGCAGAAGAATGAGCAGCTGAAAGAAACGTCGAAGCGACCGTGGGGCAGCAAA 1427
||||| |||||||||||||||| |||| ||| ||||||||||||| ||||||||||||
Sbjct 1374 GTGGAGATGCAGAAGAATGAGC---TGAAGGAATCGTCGAAGCGACCATGGGGCAGCAAA 1430
Query 1428 AGGCAATGCTTGAGAAGGACATTAACCGGACCATGGTGAAGGATGAAGCAACAAGAACGG 1487
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1431 AGACAATGCTTGAGAAGGACATTAACTGGTCCATGGTGAAGGATGAAGCAACAAGAACGG 1490
Query 1488 ATGAACCAGACTCCTAGCTTGGGATTAATGTAATAGGA-T-AGTGCTACCTGTACAGGAG 1545
|| | ||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1491 -----CC----T---AGCTTGGGACTAATGTAATAGGAGTTAGTGCTACCTGTACAGGAG 1538
Query 1546 ATTAAGAGAAATTGAGTGAAAGATCTAGGTTACAGAGTAGGAGAGAGTTTTCATTATGAA 1605
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1539 ATTAAGAGAAATTGAGTGAAAAATCTAGGTTACAGAGTAGGAGAGAGTTTTCATTATGAA 1598
Query 1606 TAAATGACATTTTGTGCCCTGACCTTTGTTAGTTTAGGTTTAGATTATCCTCTGTTATTG 1665
||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||| |||
Sbjct 1599 TAAATGACAGTTTGTGCCCTGACCTTTATTAGTCTAGGTT-AGATTATCCTCTGTTTTTG 1657
Query 1666 ACTTATTGTGCTTTCTGGTTGTTAGGGTTTCTAAAAGACATA--GT--T-GTTTATATAT 1720
| || |||||||||||| |||||| ||||||||||| || | ||||||||||
Sbjct 1658 --T----GT--TTTCTGGTTGTTGGGGTTTTTAAAAGACATACAGTAGTTGTTTATATAT 1709
Query 1721 ATGTCTGACTTTGTATTCCGGATTTGGTTCTCTTGTGTCATTAACTTGGGTTTAGCCATT 1780
||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 1710 ATGTCTGACTTTGTATTACGGATTTGGTTCTCTTATGTCATTAAGTTGGGTTTAACCATT 1769
Query 1781 ATTACTTAAGAGTGGCAACGAAATC 1805
| |||||||||||||||||||||
Sbjct 1770 A---CTTAAGAGTGGCAACGAAATC 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67762545855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5