BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19300.1
Length=2190
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479445 jgi|Araly1|479445|fgenesh2_kg.3__2146__AT3G19300.1 3408 0.0
> Ahg479445 jgi|Araly1|479445|fgenesh2_kg.3__2146__AT3G19300.1
Length=2140
Score = 3408 bits (1845), Expect = 0.0
Identities = 2045/2143 (95%), Gaps = 8/2143 (0%)
Strand=Plus/Plus
Query 17 ATTCTCTTCAGGCGACTTCTCATTGACCTCTCCTAACGACTCTCTCTGTTC-TTTGGCCA 75
|||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 1 ATTCTCTTCAGGCGACTTCTCATTGACCTCTCCTAACGTCTCTCTCTCTTCTTTTGGCCA 60
Query 76 TGGTGTTGGTTTATAATCAAGCTCTCTTGCTCGCATTCTTCGCATTGCTTGGATTCCAGT 135
||||| |||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 61 TGGTGGTGGTTTATAAGCAAGCTCTCTTGCTCGCATTGTTCGCATTTCTTGGATTCCAGT 120
Query 136 ACTTTCCTTTACTCACCGAAGCAGGTTGTCCATTGGACTTTACTTCATCTAACTTCACTC 195
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTTGCCTTTACTCTCCGAAGCAGGTTGTCCATTGGACTTTACTTCATCTAACTTCACTC 180
Query 196 TAGTGGCTTCCGTATGCTCGAACAACACCGAGAGAGCTAAATGCTGCCGCTACATGAATG 255
||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct 181 TAGTGGCTTCCGTGTGCTCGAACAATACCGATAGAGCTAGATGCTGCCGCTACATGAATG 240
Query 256 CTTTCGTTGCAATATCTGTCGCCCGCTATGCAAACTACACAGCTGATCTTGGAGTTACAT 315
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 CTTTCGTTGCAGTATCTGTCGCCCGCTATGCGAACTACACAGCTGATCTTGGAGTTACAT 300
Query 316 CAGATTTGA-CTGAAATCTGTATCACTACTATCTCTAGAACCATGGAGCTTTATGGAATC 374
||||||| | |||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGATTT-ATCTGAAACCTGCATTACTACTATCTCTAGAACCATGGAGCTTTATGGAATC 359
Query 375 CCAAGAAATGCTACCATCTTCTGTGGATTAGGGACCAAGATTCTTGTTAACTATGATTGT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 CCAAGAAATGCTACCATCTTCTGTGGATTAGGGACCAAGATTCTTGTTAACTACGATTGC 419
Query 435 GAGGGTCTGACTACTGTACCGCCAATGCTTCATTCCACAAGTTTTGGAGATGTTTCCAGA 494
||||||||| | ||||||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 420 GAGGGTCTGGCCACTGTACCGCCGATGCTTCGTTCCACAAGTTTTGGAGATGTTTCTAGA 479
Query 495 AACTGCAAACTCCCGCTTCCTCCGGGTGATCAATGCAGGAATTGTTTGAATTCCAGTATC 554
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 480 AACTGCAAACTTCCGCTTCCACCGGGTGATCAATGCAGGAATTGCTTGAATTCCAGTATC 539
Query 555 AGCTACCTTAGGAGCCTCGTTGGTGCTGATAATAGCATCAAACTGAGTACTTGTCGTGAT 614
| ||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 540 ACCTACCTTCGTAGCCTCGTTGGTGCAGATAATAGCATCAAACTGAGTACTTGTCGTGAT 599
Query 615 GCAACTTATGCTGTGTTAGCAAGCCGGGTTGACAATTCATCGGCTCTTGAACTAGCTAGC 674
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 600 GCAACTTATGCTGTGTTAGCAAGCCGGGTTGACAATTCATCTGCTCTTGAACTCGCTAGC 659
Query 675 TGCTTCTTTAATGTGCCTGAGCTTAGCCCCACTCCAGGTTCGTCTCCATCATCGCTGAGT 734
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 660 TGCTTCTTTAATGTGCCTGAGCTTAGCCCCGCTTCAGGTTCGTCTCCATCATCGCTGAGC 719
Query 735 CCAGAAGCTTCTCCTCCAGTGTTAGCTGATAGTCCAAGCAGCGATAATCTTGTTTTGTCT 794
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 720 CCAGAAGCTTCTCCTCCAGTGTTAGCTGATAGTCCAAGCAGCGACAATCTTGTTTTGTCT 779
Query 795 CCATTAAAAAGTCACCATCCATATCACTTGACAATGGTTCCGACTATTGGGATTGCTGTC 854
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 780 CCATTAAAAAGTCACCATCGATATCACTTGACAATGGTTCCGACTATTGGGATCGCTGTT 839
Query 855 ACAGTTTTTGCTCTTGTGATGGTTGTAGTCCTAATAGTTCTTATCCAAAGaaaaaaaCGA 914
||| | |||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 840 TCAGCTGTTGCTCTTGTGATGCTCGTATTCCTAATAGTTCTTATCCAAAGAAAAAAACGA 899
Query 915 GAACTTGATGACTCCAAGAGCATCGCTTGTAATC-TAACAAGGACATCTCCTTCTCCCCG 973
|||||||||||||||||| |||| | |||||||| ||| ||||||||||||||||||||
Sbjct 900 GAACTTGATGACTCCAAGGGCATGGATTGTAATCTTAA-AAGGACATCTCCTTCTCCCCA 958
Query 974 CCCAAGGTCGATGATTCATGAAGGTAATTCGTTTGGTTTTCGGAAATTCAGCTACAAGGA 1033
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 959 CCCAAGGTCGATGATTCATGAAGGTGATTCGTCTGGTTTTCGGAAATTCAGCTACAAGGA 1018
Query 1034 GATAAGGAAAGCAACTGAAGATTTCAACGCGGTGATTGGCCGTGGGGGCTTTGGGACTGT 1093
|||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1019 GATAAGGAAAGCAACTGAAGATTTCAACACAGTGATTGGCCGTGGGGGATTTGGGACTGT 1078
Query 1094 TTACAAAGCTGAGTTCAGTAATGGGTTGGTTGCAGCTGTAAAAAAGATGAACAAGAGCTC 1153
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1079 TTACAAAGCTGAGTTCAGTAATGGGTTGGTTGCAGCTGTAAAAAGGATGAACAAGAGCTC 1138
Query 1154 TGAACAAGCTGAAGATGAATTTTGCAGAGAGATAGAGCTTCTCGCCAGGCTGCATCACCG 1213
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGAACAAGCAGAAGATGAATTTTGCAGAGAGATAGAGCTTCTCGCCAGGCTGCATCACCG 1198
Query 1214 CCACCTAGTTGCTTTGAAAGGGTTTTGTAATAAGAAGAACGAGAGGTTCCTTGTCTACGA 1273
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1199 CCACCTAGTTGCTTTGAAAGGGTTTTGTAACAAGAAGAACGAGAGGTTCCTTGTCTACGA 1258
Query 1274 GTATATGGAAAATGGGAGCCTGAAGGATCATCTACACTCCACGGAAAAATCTCCACTAAG 1333
|||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||
Sbjct 1259 GTATATGGAAAATGGGAGCCTGAAGGATCATCTACATTCCACGGTAAAACCTCCACTTAG 1318
Query 1334 TTGGGAATCAAGGATGAAAATCGCAATTGATGTGGCTAATGCTCTGGAATACCTTCACTT 1393
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1319 TTGGGAAACAAGGATGAAAATCGCAATCGATGTGGCTAATGCTCTGGAATACCTTCATTT 1378
Query 1394 CTACTGTGACCCTCCCCTCTGTCACAGAGACATTAAGTCAAGCAATATATTACTCGACGA 1453
||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1379 CTACTGTGACCCTCCTCTCTGTCACAGAGACATTAAGTCAGGCAACATATTACTCGACGA 1438
Query 1454 GCACTTTGTTGCTAAGCTTGCAGATTTTGGCCTTGCACATGCTTCTAGAGATGGCTCCAT 1513
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GAACTTTGTTGCTAAGCTTGCAGATTTTGGCCTTGCACATGCTTCTAGAGATGGCTCCAT 1498
Query 1514 TTGTTTTGAACCTGTTAATACTGATATCCGCGGAACTCCAGGCTATGTAGATCCAGAGTA 1573
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1499 TTGTTTTGAACCTGTTAATACCGATATCCGTGGAACTCCAGGCTATGTAGATCCAGAGTA 1558
Query 1574 CGTTGTAACACATGAACTAACAGAGAAAAGCGACGTGTACAGCTACGGAGTGGTGTTGCT 1633
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1559 CGTTGTAACACAAGAACTGACAGAGAAAAGCGATGTGTACAGCTACGGAGTGGTGTTGCT 1618
Query 1634 AGAGATCATAACTGGGAAAAGAGCGGTTGATGAAGGTAGGAACCTGGTAGAACTGTCTCA 1693
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||
Sbjct 1619 AGAGATCATAACTGGGAAAAGAGCCGTTGATGAAGGTAGGAACCTGGTAGAATTGTGTCA 1678
Query 1694 GCCTTTGCTGGTATCAGAATCAAGACGCATAGATCTGGTGGATCCGAGAATCAAAGACTG 1753
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1679 GCCTTTACTGGTATCAGAATCAAGACGCATAGATCTGGTGGATCCGAGAATCAACGACTG 1738
Query 1754 CATAGATGGAGAACAGCTTGAAACAGTAGTGGCAGTTGTAAGATGGTGCACAGAGAAAGA 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CATAGATGGAGAACAGCTTGAAACAGTAGTGGCAGTTGTAAGATGGTGCACAGAGAAAGA 1798
Query 1814 AGGCGTGGCTAGGCCATCAATCAAGCAAGTTCTGAGGCTGTTGTACGAAAGCTGTGATCC 1873
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1799 AGGCGTGGCTAGGCCATCAATCAAGCAAGTCCTGAGGCTGTTGTACGAAAGCTGTGATCC 1858
Query 1874 GTTGCATCTCGGGCTTGCAATGGCAGTTGAAGAGAACAAAGGACGGTCACTGAGAGGTGA 1933
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1859 ATTGCATCTCGGGCTTGCAATGGCGGTCGAGGAGAACAAAGGACGGTCACTGAGAGGTGA 1918
Query 1934 CTCAGGGTTCCAAAGTGGAGACATCCGTGGCTTGGCTTCTTCCTCTAGTACTACTTCAAG 1993
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 CTCAGTGTTCCAAAGTGGAGACATCCGTGGCTTGGCTTCTTCCTCTAGTACTACTTCAAG 1978
Query 1994 GTCGCATTGTAGCCGGAGTTTTCTGCTTGAGACTGGCTCCCCTCACTCTCCACCAAATGG 2053
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1979 GTCGCATTGTAGCCGGAGTTTTCTGCTTGAGACTGGTTCCCCTCACTCTCCACCAAATGG 2038
Query 2054 TCTCTCTTTTTGAGTGAGCAGAGACAAATTAGTCACATTTTTT--CTAGAAATTTGTCAC 2111
|||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 2039 TCTCTCTTTTTGAGTGAGGAGAGACAA-TTAGTCACATTTTTTTTCTAGAAATTTGTCAC 2097
Query 2112 TTAGGATCATCCTAACTGTTTTCTAATTGCAGTTTTGAAAGAT 2154
|| ||||||||| |||||||||||||||||| |||||||||||
Sbjct 2098 TTGGGATCATCCAAACTGTTTTCTAATTGCAATTTTGAAAGAT 2140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82427290180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5