BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19310.1
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479446 jgi|Araly1|479446|fgenesh2_kg.3__2147__AT3G19310.1 2093 0.0
Ahg474106 jgi|Araly1|474106|fgenesh2_kg.1__4060__AT1G49740.1 682 0.0
> Ahg479446 jgi|Araly1|479446|fgenesh2_kg.3__2147__AT3G19310.1
Length=1315
Score = 2093 bits (1133), Expect = 0.0
Identities = 1258/1319 (95%), Gaps = 6/1319 (0%)
Strand=Plus/Plus
Query 1 CAAAATCTTTGGGTTTTTATTCTTT--TAAACTTCTTTATGGGATTTTGGTGCAAGAAAG 58
||||||||||||||||| ||||||| ||| | |||||||||||||| ||| ||||||
Sbjct 1 CAAAATCTTTGGGTTTTAATTCTTTCAAAAAAGT-TTTATGGGATTTTGTTGCGAGAAAG 59
Query 59 AAGAAAATGTTTCAGAGATTCACCTTCTTTCTAACAGCTCTTCTCATTCCATGTATTCTA 118
|||| |||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 60 AAGACAATGTTTCAGAGTTTCACCTTCTTTCTAACAGCTCTTCTCATTCCATGT-TT-T- 116
Query 119 ATTATCCTTAGCCCTTCATATGCCCTCAAGGAAGGAGAAACATGCATCGTGAGCAAGAAT 178
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CTTATCCTTAGCCCTTCATGTGCCCTCAAGGAAGGAGAAACATGCATCGTGAGCAAGAAT 176
Query 179 TGTGATCGGGGATTACACTGTGAATCGTGTCTCGCCAGCGATAGTTTCCGACCTAGATGC 238
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TGTGATCGGGGACTACACTGTGAATCGTGTCTCGCCAGCGATAGTTTCCGACCTAGATGC 236
Query 239 TCCCGAATGCAACCCATTAACCCGACCACCAAGGTAAAAGGGTTGCCTTACAACAAGTAC 298
|| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 237 TCTCGAATGCAACCCATTAACCCCACCTCCAAGGTAAAAGGTTTGCCTTACAACAAGTAC 296
Query 299 TCATGGTTAACAACCCACAATTCATTTGCTCGAATGGGTGCAAAATCAGGCACTGGCTCT 358
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 297 TCGTGGTTAACAACCCACAATTCATTTGCTCGAATAGGTGCAAAATCAGGCACTGGCTCT 356
Query 359 ATGATTCTTGCACCTTCCAACCAACAAGATTCAATCACAAGCCAACTCCTTAATGGTGTT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATGATTCTTGCACCTTCCAACCAACAAGATTCAATCACAAGCCAACTCCTTAATGGTGTT 416
Query 419 AGAGGGTTTATGCTTGACTTGTACGACTTCCAAAACGATATATGGCTTTGCCATTCTTAC 478
|||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||
Sbjct 417 AGAGGGTTTATGCTTGACATGTACGACTTCCAAAATGATATATGGCTCTGCCATTCTTAC 476
Query 479 GGTGGAAATTGTTTCAATTACACCGCATTCCAACCCGCGGTTAACATTTTAAAGGAGTTT 538
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GGTGGAAATTGCTTCAATTACACCGCATTCCAACCCGCGGTTAACATTTTAAAGGAGTTT 536
Query 539 CAAGTGTTTCTAGACAAGAACAAGGATGTTGTTGTAACGCTTATCCTCGAGGACTATGTG 598
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 537 CAAGTGTTTCTAGACAAGAACAAGGATGTTGTTGTGACACTTATCCTCGAGGACTATGTA 596
Query 599 AAATCTCCTAATGGTTTAACCAGAGTGTTTGATGCATCCGGATTACGAAACTTCATGTTT 658
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 597 AAATCTCCTAATGGTTTAACCAAAGTGTTTGATGCATCCGGATTACGAAATTTCATGTTT 656
Query 659 CCGGTATCAAGAATGCCTAAAAACGGAGAAGATTGGCCTACTCTTGATGATATGATATGT 718
|||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 657 CCGGTAACAAGAATGCCTAAAAACGGAGAAGATTGGCCTACTATCGATGATATGATAAGT 716
Query 719 CAGAACCAACGATTGCTTGTTTTCACGTCTAATCCTCAAAAAGAAGCGTCGGAGGGAATT 778
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 717 CAGAACCAACGATTGCTTGTTTTCACGTCTAACCCTCATAAAGAAGCGTCTGAGGGAATT 776
Query 779 GCGTTTATGTGGAGATACATGATAGAGAATCAATATGGAGATGGAGGGATGAAGGCTGGA 838
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCGTTTATATGGAGATACATGATAGAGAATCAATATGGAGATGGAGGGATGAAGGCTGGA 836
Query 839 GTGTGTACCAATAGACCGGAATCAGTTGCAATGGGAGATAGATCAAGATCACTTATTCTA 898
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 GTTTGTACAAATAGACCGGAATCAGTTGCAATGGGAGATAGATCGAGATCACTTATTCTA 896
Query 899 GTCAATTATTTTCCGGATACTGCAGATGTGATCGGATCTTGTAAGCAGAACTCTGCTCCT 958
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 897 GTCAATTACTTTCCGGATACTGCAGACGTGATCGGATCTTGTAAGCAGAACTCTGCTCCT 956
Query 959 CTTCTTGACACCGTCAAAAACTGTCAAGAAGCCTCGGGAAAACGTTGGCCTAACTTCATT 1018
|||||||||||| ||||||| |||||||||||||| ||| |||| |||||||||||||||
Sbjct 957 CTTCTTGACACCATCAAAAATTGTCAAGAAGCCTCAGGACAACGCTGGCCTAACTTCATT 1016
Query 1019 GCAGTCGATTTCTACAAGAGAAGCGATGGTGGAGGAGCTCCAAAAGCAGTGGATGTTGCA 1078
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1017 GCAGTCGATTTCTACAAGAGAAGTGATGGTGGAGGAGCTCCAAAAGCAGTGGATGTTGCA 1076
Query 1079 AACGGTCATGCAGTTTGCGGCTGCGAAGATATAGCCGCTTGTAAAGAGAACATGCCATAT 1138
||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1077 AACGGCCATTCAGTCTGCGGCTGTGAAGATATAGCCGCTTGTAAAGAGAACATGCCATAT 1136
Query 1139 GGGACGTGTGAGAAGCAAGAAGAGAAGAAACCGGAATCAAACCTAATGATGATAGCAAAA 1198
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1137 GGGACGTGTGAGAAGCAAGAAGAGAAGAAACCGGAGTCAAACCTAATGATGATAGCAAAA 1196
Query 1199 CTTACCGCGGAAGCGACTAAAGGCTATGGCCACCCATCTACCAAACCGACCCTACTTGGG 1258
|| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1197 CTAACCGCGGAAGCGACTAAAGGCTATGGTCACCCATCTACCAAACCGACCCAACTTGGG 1256
Query 1259 CTTTCTGTGTTTGTTGTAACCTTTGTCTCACTTCTCTCAACTTTTTGACTCAAATGATT 1317
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1257 CTTTCTGTGTTTGTTGTAACCTTTGTCTTACTCCTCTCAACTTTTTGACTCAAATGATT 1315
> Ahg474106 jgi|Araly1|474106|fgenesh2_kg.1__4060__AT1G49740.1
Length=1603
Score = 682 bits (369), Expect = 0.0
Identities = 769/959 (80%), Gaps = 40/959 (4%)
Strand=Plus/Plus
Query 139 TGCCCTCAAGGAAGGAGAAACATGCATCGTGAGCAAG-AATTGTGATCG-GGGATTACAC 196
||| |||||||||||| ||||||| || | | | || || ||||| || |||||||||
Sbjct 272 TGCTCTCAAGGAAGGAAAAACATGTATAGCAAAC-AGCAACTGTGA-CGCTGGATTACAC 329
Query 197 TGTGAATCGTGTCTCGCCAGCGA-TAG-TTTCCGACCTAGATGCTCCCGAATGCAACCCA 254
|| ||| | ||| | |||| | | | | ||| |||||||||||||||||| |||||||
Sbjct 330 TGCGAAACATGTATAGCCAAC-ACT-GATTTTAGACCTAGATGCTCCCGAACCCAACCCA 387
Query 255 TTAACCCGACCACCAAGGTAAAAGGG-TTGCCTTACAACAAGTACTCATGGTTAACAACC 313
| ||||| | | |||||| |||||| ||||||| ||||||||| ||||||||||| ||
Sbjct 388 TCAACCCCATCTCCAAGG-CAAAGGGATTGCCTTTCAACAAGTATTCATGGTTAACCACA 446
Query 314 CACAATTCATTTGCTCGAATGGGTGCAA-AATCA-GGCACTGGCTCTATGATTCTT-GCA 370
||||| || |||||||| |||| | || |||| || || || ||| ||||| || ||
Sbjct 447 CACAACTCCTTTGCTCGTTTGGG-GGAAGTATCACGG-ACCGGTTCTGTGATT-TTGGCG 503
Query 371 CCTTCCAACCAACAAGATTCAATCACAAGCCAACTCCTTAATGGTGTTAGAGGGTTTATG 430
||| | ||||| |||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 504 CCTACTAACCAGCAAGATTCAATCACAAGCCAACTCAATAATGGTGTAAGAGGGTTTATG 563
Query 431 CTTGACTTGTACGACTTCCAAAACGATATATGGCTTTGCCATTCTTACGGTGGAA-ATTG 489
|| ||| |||| |||||| |||||||||| |||||||||||||||| || |||| | ||
Sbjct 564 CTCGACATGTATGACTTCGAAAACGATATCTGGCTTTGCCATTCTTTCGACGGAACA-TG 622
Query 490 TTTCAATTACACCGCATTCCAACCCGCGGTTAACATTTTAAAGGAGTTTCAAGTGTTTCT 549
|||||||| ||| || || ||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 623 TTTCAATTTCACAGCTTTTCAACCGGCGATTAACATTTTAAGGGAGTTTCAAGTGTTTCT 682
Query 550 AGACAAGAACA-AGGATGTTGTTGTAACGCTTATCCTCGAGGACTATGTGAAATCTCCTA 608
||| ||||||| | || | ||||||||| ||||| |||| |||||||||||||||||||
Sbjct 683 AGAGAAGAACACA-GAGGAAGTTGTAACGATTATCATCGAAGACTATGTGAAATCTCCTA 741
Query 609 ATGGTTTAACCAGAGTGTTTGATGCATCCGGATTACGAAACTTCATGTTTCCGGTATCAA 668
| ||| | || | |||||||||||| | || ||||||| ||||||||||||||| | |
Sbjct 742 AAGGTCTCACAAAAGTGTTTGATGCGGCTGGGCTACGAAAGTTCATGTTTCCGGTAGCTA 801
Query 669 GAATGCCTAAAAACGGAGAAGATTGGCCTACTCTTGATGATATGATAT-GTCAGAACCAA 727
||||||| ||||| |||| ||||||||| | ||||| || ||| | | | || ||||||
Sbjct 802 GAATGCCCAAAAATGGAGGAGATTGGCCAAGGCTTGACGACATGGT-TCGACAAAACCAA 860
Query 728 CGATTGCTTGTTTTCACGTCTAATCCTCAAAAAGAAGC-GTCGGAGGGAATTGCGT-T-T 784
|| ||||||||||| || ||| || | || |||||||| || |||| || || | |
Sbjct 861 CGGTTGCTTGTTTTTACATCTGATTCACATAAAGAAGCAACCGAAGGG-ATCGCATATCA 919
Query 785 ATGTGGAGATACATGATAGAGAATCAATATGGAGATGGAGGGA-TGAAGGCT-GGAGTGT 842
||| | || || ||| | ||||||||||||||| ||||| ||| |||||| | |||||||
Sbjct 920 ATG-GAAG-TATATGGTTGAGAATCAATATGGAAATGGA-GGACTGAAGG-TAGGAGTGT 975
Query 843 GTACC-AATAGACCGGAATCAGTTGCAATGGGAGATAGATC-AAGATCACTTATTCTAGT 900
|| || |||||| | |||||| | ||| | |||| ||| || ||| ||| |||| ||
Sbjct 976 GT-CCAAATAGAGCTCAATCAGCACCGATGAGCGATAAATCGAA-ATCTCTTGTTCTTGT 1033
Query 901 CAATTATTTTCCGGATACTGCAGATGTGATCGGATCTTGTAAGCAGAACTCTGCTCCTCT 960
|| |||| || ||| |||| ||| |||| | | | ||||| || ||||||||| ||||
Sbjct 1034 GAACCATTTCCCTGATGCTGCGGATTTGATAGTAGCATGTAAACAAAACTCTGCTTCTCT 1093
Query 961 TCTTGACA-CCGTCAAAAAC-TGTCAAGAAGCCTCGGGAAAACGTTGGCCTAACTTCATT 1018
|||||| | || || || || ||| | ||||| | ||| | || ||||||||||||||
Sbjct 1094 TCTTGA-ATCCATC-AAGACATGTTACCAAGCCGCAGGACAGCGATGGCCTAACTTCATA 1151
Query 1019 GCAGTCGATTTCTACAAGAGAAGCGATGGTGGAGGAGCTCCAAAAGCAGTGGATGTTGC 1077
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1152 GCAGTCGATTTCTACAAGAGAAGCGATGGTGGAGGAGCTCCCCAAGCAGTTGATGTTGC 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49636037934
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5