BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19320.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479447 jgi|Araly1|479447|fgenesh2_kg.3__2148__AT3G19320.1 2180 0.0
Ahg474107 jgi|Araly1|474107|fgenesh2_kg.1__4061__AT1G49750.1 688 0.0
> Ahg479447 jgi|Araly1|479447|fgenesh2_kg.3__2148__AT3G19320.1
Length=1485
Score = 2180 bits (1180), Expect = 0.0
Identities = 1387/1488 (93%), Gaps = 9/1488 (1%)
Strand=Plus/Plus
Query 1 ATGGCCCCAAATTATTATCCTTCCATTTTCTTGATTCTGTCTGTTCACTTTCTTTCAATT 60
||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGCTCCAACTTATAATCCTTCCATTTTCTTGATTCTGTCTTTTCACTTTCTTTCAATT 60
Query 61 CTAGCCACCGGAAACAACCACAACACCT-ACAGAAAATCTCTCGAAATCATCATCGGCGG 119
|||| ||||||||||||||| | | || |||||||||||||||||||||||||||||||
Sbjct 61 TTAGCTACCGGAAACAACCAC-ATAACTGACAGAAAATCTCTCGAAATCATCATCGGCGG 119
Query 120 TGGCAGTGATAGCACCAATTACAATTCTCCTGCGCCATCTCCGGAGCCAGAAGACTATCT 179
||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TGGCAGTGAAAGCTTCAATTACAATTCTCCGGCGCCATCTCCGGAGCCAGAAGACTATCT 179
Query 180 TCCGCTGCCTCCTCCT---CCTCAAACGCCACCACCCCCGCCGCCACCACAGTCACTCCC 236
||||| |||||||||| ||||||| ||| |||||| ||| ||||||||| |||| ||
Sbjct 180 TCCGCCGCCTCCTCCTCGACCTCAAATACCATCACCCCTGCCTCCACCACAGCCACTTCC 239
Query 237 TCCTCCATCCCCATCTCCGGAGCCTGAACACTATCCTCCCCCTCCTTATCATCATTATAT 296
||||| || ||||||||||||||||||| ||| || ||| || ||||||||||||||| |
Sbjct 240 TCCTCTATTCCCATCTCCGGAGCCTGAAAACTGTCGTCCGCCACCTTATCATCATTATCT 299
Query 297 AACACCATCACCACCGCCACCACGGCCACTTCCTCCTCCACCGCCACCGCCGCTACAT-T 355
||||||||| || |||||||||||||||||| ||||||||| |||||| || |||| | |
Sbjct 300 AACACCATCTCCGCCGCCACCACGGCCACTTGCTCCTCCACTGCCACCACCACTAC-TGT 358
Query 356 TCTCAAGCCCATTAATAAAGAAAGTTTATCCAGTCATCAAGAATTTCCAGACGCTAATCG 415
|||| |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 359 TCTCCAGCCCACTAATAAAGAACGTTTATTCAGTCATCAAGAATTTCCAGACGCTAATCG 418
Query 416 AAGATGATCCAAAG-AGCATACTTAAAACATGGGTAGGCACCGACATTTGCGCTCAGGAC 474
|| ||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 419 AAAATGATCCAAAGAAG-ATACTCAGAACATGGGTAGGCACCGACATTTGCGCTCAGGAC 477
Query 475 AAATACATAGGACTCGAGTGCGCCAAGTTACCGGGAACAAACGACCTCGCACTTGCCAGC 534
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 AAATATATAGGACTAGAGTGCGCCAAGTTCCCGGGAACAAACGACCTCGCACTTGCCAGC 537
Query 535 ATTCAGTTCAACAATTTTAACTTGGGTGGCAAGAAACTCCGGCTAGATAACTTCCTCAAC 594
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 538 ATTCAGTTCAACAACTTTAACTTGGGAGGCAAGAAACTCCGCCTAGATAACTTCCTTAAC 597
Query 595 AAGTTAGAAGAAGTCACCATCTTTCACGCAAACAGTAACAATTTTGTGGGCTCTGTTCCA 654
||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||
Sbjct 598 AAGTTAGAAGAAGTCACCATCTTCCACGCAAATAGTAACAGTTTCGTGGGCTCTGTTCCA 657
Query 655 AACTTCAGCAAATTGAAGTACCTTTTCGAGCTTGATCTCAGCAACAATAAGCTCTCTGGA 714
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAATTCAGCAACTTGAAGTACCTTTTCGAGCTTGATCTCAGCAACAATAAGCTCTCTGGA 717
Query 715 GAGTTCCCAAGCTCTGTGTTAAAAGCAACGAACCTCACGTTTCTCGATCTCAGATTCAAT 774
||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 718 GAGTTCCCAAGCTCTGTACTAAAAGCAACAAACCTAACGTTTCTCGATCTCAGATTCAAT 777
Query 775 TCTTTCTCCGGTTCTGTCCCTCCTCAGGTTTTCAATCTAGACCTCGACGTATTGTTCATC 834
||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct 778 TCTTTCTCCGGTTCTGTGCCTCCTCATGTTTTTAATCTCGACCTGGACGTATTGTTCATC 837
Query 835 AACAACAACAATCTTGTTCAGAGACTCCCTGAAAATCTTGGATCGATCACCGCTCTTTAC 894
|||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct 838 AACAACAACAATCTTGTTCAGAGACTCCCTGAGAATCTCGGATCCATCACTGCTCTTTAC 897
Query 895 CTCACATTCGCTAATAACAGATTCACAGGTCCTATTCCGGGAAGCATTGGTGACATCAAG 954
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CTCACATTCGCTAACAACAGATTCACAGGTCCTATTCCGGGAAGCATTGGTGACATCAAG 957
Query 955 TCCCTACAAGAAGTCCTTTTCTTGAATAACAAGTTAACTGGTTGCTTACCGTACCAAATT 1014
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 958 TCCCTACAAGAAGTCCTTTTCTTGAATAACAAGTTAACAGGTTGCTTACCATACCAAATT 1017
Query 1015 GGGAACCTTAACCGAGCTACGGTTTTCGATGTTGAGTTAAACCAGTTAACCGGTCCGATT 1074
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1018 GGGAACCTTAACCGAGCTACGGTTTTCGATGTTGAGTCAAACCAGTTAACCGGTCTGATT 1077
Query 1075 CCGTACTCTTTCGGATGCCTAAAGAAGATGGAGCAGCTGAATTTGGCTAGAAACAATTTC 1134
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1078 CCGTACTCTTTCGGATGCCTAAACAAGATGGAGCAGCTCAATTTGGCTAGAAACAACTTC 1137
Query 1135 TACGGTACTATACCGGAGATTGTCTGCGAGCTCTCAGCCCTCAAGAACCTTTCTCTCTCG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TACGGTACTATACCGGAGATTGTCTGCGAGCTCTCAGCCCTCAAGAACCTTTCTCTCTCG 1197
Query 1195 TACAATTACTTCACACAGGTCGGTCCAAAATGTCGAACACTCATCAAGAGGAAGATTCTT 1254
| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1198 TCCAATTACTTCACGCAGGTAGGTCCAAAATGTCGAACACTCATCAAAAGGAAGATTCTT 1257
Query 1255 GATGTGGGTATGAATTGTATTCTAGATCTTACGAATCAAAGAACACCATGGGAATGCGCC 1314
|||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 1258 GATGTGGGTATGAATTGTATACTAGATCTTGCGAATCAAAGAGCACCATGGGAATGCGCC 1317
Query 1315 AAGTTTTTCTTGCGGAAACAGAGTTGTCCTAACTTTAAGTCTTTCTTTTATCTCCCTTGT 1374
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1318 AAGTTTTTCTTGCGGAAACAGAGTTGTCCTAACTATAAGTCTTTCTTTTATGTCCCTTGT 1377
Query 1375 GGCAAAGATCCCCACCGGATTAAACCGGATCAAGAAGGATCAGACGGTCAGGCTTCGCCA 1434
|| |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1378 GGAAAAGATCCGCACCGGATTAAACCAGATCAAGAAGGATTAGACGGTCAGGCTTCGCCG 1437
Query 1435 CCGGTATCTTACAATGCTCTTAACCCAGACCGGATTCGGAATCTCTAG 1482
||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1438 CCGGTATCTTATGGTGCTCTTAACCCAGACCGGATTCGGAATCTCTAG 1485
> Ahg474107 jgi|Araly1|474107|fgenesh2_kg.1__4061__AT1G49750.1
Length=1659
Score = 688 bits (372), Expect = 0.0
Identities = 763/946 (81%), Gaps = 49/946 (5%)
Strand=Plus/Plus
Query 562 GGCAAGAAACTCCGGCTAGATAACTTCCTCAACAAGTTAGAAGAAGTCACCATCTTTCAC 621
||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||| |||
Sbjct 530 GGCAAGAAACTCCTGTTAGATAGCTTCCTCGACAAGTTAGAAGAAGTCACCATCTTCCAC 589
Query 622 GCAAACAGTAACAATTTTGTGGGCTCTGTTCCAAACTTCAGCAAATTGA-AGTACCTT-T 679
|||||| ||| |||| | |||||||| || || ||||||| |||| | || ||| |
Sbjct 590 GCAAACTCCAACGATTTCATAGGCTCTGTGCCTGACATCAGCAAGTTGACA-TA-CTTAT 647
Query 680 TCGAGCTTGATCTCAGCAACAATAAGCTCTCTGGAGAGTTCCCAAGCTCTGTGTT-A--A 736
||||||| ||||| |||||||| || ||| | ||||| ||||||| | ||| || | |
Sbjct 648 TCGAGCTCGATCTAAGCAACAACAAACTCACCGGAGATTTCCCAACCAATGTCTTGATGA 707
Query 737 AAGCAACGAACCTCACGTTTCTCGATCTCAGATTCAATTC-TTTCTCCGGTTCTGTCCCT 795
|| ||| || ||||||||||| |||||||| ||||| || ||||| || ||||| |||
Sbjct 708 AA--AAC-AATCTCACGTTTCTTGATCTCAGGTTCAA-TCAGTTCTCAGGCTCTGTTCCT 763
Query 796 CCTCAGGT-TTTCAATCTAGACCTCGACGTATTGTTCATCAACAACAACAATCTTGTTCA 854
|||||||| ||| ||||| ||||| || || |||||||||||||||||||||||||||||
Sbjct 764 CCTCAGGTCTTT-AATCTCGACCTTGATGTCTTGTTCATCAACAACAACAATCTTGTTCA 822
Query 855 GA-GACTCCCT-GAAAATCTTGGATCGATCACCGCTCTTTACCTCACATTCGCTAATAAC 912
|| | || || | || ||||||||| ||||| |||||||||||||| ||||| || |||
Sbjct 823 GAAG-CTTCCAAGCAA-TCTTGGATCCATCACTGCTCTTTACCTCACCTTCGCCAACAAC 880
Query 913 AGATTCACAGGTCCTATTCCGG-GAAGCATTGGTGACATCAAGTCCCTACAAGAAGTCCT 971
|| ||||| ||| | || || | || |||| || ||||||||| |||||||||||||||
Sbjct 881 AGGTTCACGGGTTCAATACCCGAGA-GCATAGGCAACATCAAGTACCTACAAGAAGTCCT 939
Query 972 TTTCTTGAATAACAAGTTAACTGGTTGCTTACCGTACCAAATTGGGAACCTTAACC-GAG 1030
||||||||||||| ||||||| || ||||||||||||||||| || ||||| |||| |||
Sbjct 940 TTTCTTGAATAACCAGTTAACCGGATGCTTACCGTACCAAATCGGAAACCT-AACCCGAG 998
Query 1031 CTACGGTTTTCGATGTTGAGTTAAACCAGTTAACCGGTCCGATTCCGTACTCTTTCGGAT 1090
| || ||||||||||||| ||| ||||| ||||||||||| || |||||||||||||| |
Sbjct 999 CCACTGTTTTCGATGTTGGGTTCAACCAATTAACCGGTCCAATACCGTACTCTTTCGGTT 1058
Query 1091 GCCTAAAGAA-GATGGAGCAGCTGAATTTGGCTAGAAACAATTTCTACGGTACTATACCG 1149
|| || | || |||||| || || ||||| || ||||||| ||||| || || ||||||
Sbjct 1059 GCTTAGA-AACGATGGAACAACTCAATTTAGCCGGAAACAAGTTCTATGGAACCATACCG 1117
Query 1150 GAGATTGTCTGCGAGCT--CTCAGCCCTCAAGAACCTTTCTCTCTCGTACAATTACTTCA 1207
||||| || |||||| | || | | |||| ||| ||||||||||||| ||||||||||
Sbjct 1118 GAGATCGTATGCGAGATTGCTT-GTC-TCAAAAACGTTTCTCTCTCGTATAATTACTTCA 1175
Query 1208 CACAGGTCGGTCCAAAATGTCGAACACTCATCAAGAGGAAGATTCTTGATGTGGGTATGA 1267
| ||||| ||||| |||||| ||| |||||||||||| || ||| | || || ||||||
Sbjct 1176 CTCAGGTTGGTCCGAAATGTAGAAAACTCATCAAGAGAAACATTATGGACGTTAGTATGA 1235
Query 1268 ATTGTATTCTAGATCTTACGAATCA-AAGAACACCATGGGAATGCGCCAAGTTTTTCTTG 1326
||||||| || |||||| | || || || ||| |||| ||| || || ||||| ||| ||
Sbjct 1236 ATTGTATACTTGATCTTCCAAACCAGAA-AACGCCATCGGAGTGTGCTAAGTTCTTCATG 1294
Query 1327 CGGAAACAGAGTTGTCCTAACTTT-AAGTCTTTCTTTTA-TCTCCCTTGTGGCAAAGA-T 1383
|||||||||| ||||| ||| || |||||||| ||| | | |||||||||| || || |
Sbjct 1295 CGGAAACAGACTTGTCTTAA-TTCCAAGTCTTTGTTT-ACTGTCCCTTGTGGTAA-GAAT 1351
Query 1384 CCCCACCGGATTAAACCGGATCAAGAAGGATC--AG-ACG-----G-TC-AGGCTTCGCC 1433
|| || || ||||||||||||||||| || || ||| | || || ||| |
Sbjct 1352 CCAAACAGGGTTAAACCGGATCAAGAACAATTGGAGGACGAAAAAGCTCGAGT-TTCTC- 1409
Query 1434 AC-CGGTATCTTACAATGCTCTTAACCCAGACCGGATTCGGAATCT 1478
| ||||||||||||| | |||||||| |||||||||||||||||
Sbjct 1410 ATTCGGTATCTTACAACACACTTAACCCGGACCGGATTCGGAATCT 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5