BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19330.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479449 jgi|Araly1|479449|fgenesh2_kg.3__2150__AT3G19330.2 1188 0.0
Ahg904903 jgi|Araly1|904903|Al_scaffold_0003_2031 990 0.0
> Ahg479449 jgi|Araly1|479449|fgenesh2_kg.3__2150__AT3G19330.2
Length=1155
Score = 1188 bits (643), Expect = 0.0
Identities = 713/747 (95%), Gaps = 4/747 (1%)
Strand=Plus/Plus
Query 19 AAACTGATCAGCTGTTATGTATGATTCAGTAGCTTTCCATTGATGAATCAAGTTCATCTT 78
||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 29 AAAGTGATCAGGTGTTATGTATGATTCAGTAGCTTTTCATTGATGAATCAAGTTCATCTT 88
Query 79 CTAGATGCGGAACTGTCTTTCCTTCAACCCAGCCTCTCCGGAGGCCTCTCTCGGCGACGA 138
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 89 CTAGATGCGGAACTGTCTTTCCTTCAACCCAGCCTCTCCGGAGGTCTCTCTCGGCGACGA 148
Query 139 CCCTCTTCCCCATCCGTCCTTAGAGAGTGGTGTGGCCTCCACTTCCAGAAACGACGCTTC 198
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 149 CCCTCTTCCCCATCCGTCCCTAGAGAGTGGTGAGGCCTCCACTTCCAGAAACGACGCTTC 208
Query 199 TATTTCGTCTCCCACGTTTAACCTCAGCCGCGAGTTGGCTCACGCTTTTCAAACCCCTTC 258
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 209 TATTCCGTCTCCCACGTTTAACCTCAGCCGTGAGTTGGCTCACGCTTTTCAAACCCCTTC 268
Query 259 ATACCACGACGTACGTTCACGGGTTCACGTGGTTGTTGACCTTACACAA-ATTCATCATC 317
||||||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||||
Sbjct 269 ATACCACGACGTACGTTCAAGGGTTCACGTGGTTGTTGACCCTACACAACA-TCATCATC 327
Query 318 GGCT-CATCCAACCAGACATTGAGCTGCTTCTTTCTCAAGTGCTCCAACCAAATAAAGAA 376
| | |||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 328 AG-TACATCCAACCAGATATTGAGCTGCTTATTTCTCAAGTGCTCCAACCAAATAAAGAA 386
Query 377 TGTGTTCAAGAAGCTATTAGACACGTCAAGCAAACTACACTTACTAATCTCGTTTCTACT 436
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 387 TGTGTTCAAGAAGCTATTAGACACGTCAAGCAAACTACACTTACCAATCTCGTTTCCACT 446
Query 437 TACTTCCAACACAGCGAAGACGCTACCCGCCTTTGCTTAAATCTTTACCAAAACGTACAC 496
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 447 TACTTCCAACACAGCGAAGACGCTACCCGCCTTTGCTTGAATCTTTACCAAAACGTCCAC 506
Query 497 AGTGCTCGCCACCACCTCTACACGCCCCTTTTAGACCTCTTCAACATCTTTCCCGGTGAT 556
||||||||||||||||||||||| || || |||||||||||||||| |||||||||||||
Sbjct 507 AGTGCTCGCCACCACCTCTACACACCTCTCTTAGACCTCTTCAACAGCTTTCCCGGTGAT 566
Query 557 TCACTCCCCGCCATTGACGAGTCCCTATGTGACCTGGCATTCGACGTTTTTCTTAAGCTC 616
||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 567 ACACACGCCGCCATTGACGAGTCCCTATGTAACCTGGCATTTGACGTTTTTCTTAAGCTC 626
Query 617 GACACGTTTGAAAACCCTTTCTCATCTCCTGAATCTTACAGCTTTCGAGACACCCAATTA 676
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct 627 GACACGTTTGAAAACCCTTTCTCATCTCCTGAATCTCACAGCTTTCAAGACACCCAACTA 686
Query 677 TGCTTCTCCCAGCTGAAGCATAATCTGGACAGACGTCTTCGCAAGTCTAGGTCACGGGTC 736
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TGCTTCTCCCAGCTGAAGAATAATCTGGACAGACGTCTTCGCAAGTCTAGGTCACGGGTC 746
Query 737 CGCCTCATCCACCATGCCACAGCTGGT 763
|||||||||||||||||||||||||||
Sbjct 747 CGCCTCATCCACCATGCCACAGCTGGT 773
Score = 547 bits (296), Expect = 7e-155
Identities = 360/390 (92%), Gaps = 7/390 (2%)
Strand=Plus/Plus
Query 857 GGTCCCTTGTGCAGTCCTTACCTCCCTCACAGTTTCAAG-AGAAAGGAGTTAACTAACAT 915
||||||||||||||||| || || ||||||||||||||| || |||||||||||||||||
Sbjct 771 GGTCCCTTGTGCAGTCCCTATCTTCCTCACAGTTTCAAGAAG-AAGGAGTTAACTAACAT 829
Query 916 TTGTCAGCTCAATGCTGCTTCCAAGGGTACTTTTGTGCTCAACAAAGATCTTGATACCAT 975
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 830 TTGTCAGCTCAATGCTGCTTCCAAGGGTACTTTTGTGCTCAACAAAGATCTGGACACCAT 889
Query 976 TGACCGTCTTGTCTCCCGTTTGCACACTGGAATTGAATACGACAAGTTTTTAATTCGACT 1035
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||
Sbjct 890 TGACCGTCTTGTCTCCCGTTTGCACACTGGGATTGAATACGACAAGCATTTAATTCGGCT 949
Query 1036 TGGATTAGAGAGGGGGAGGGACGTGCATTCAATTCAAGAGATTCTGAAACTGCTTCGCAA 1095
|||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct 950 TGGATTAGAGAGGGGGAGGGACGTGCATTCAATTCAGGAGATTGTGAAACAGCTTCGCAA 1009
Query 1096 GAGCCACCTCCCCCTCACCCATCAACTCAAGGATCTTGAGGATCATATTTGCCTTTGGTT 1155
||||||||| ||||||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 1010 GAGCCACCTTAACCTCACCCAGCAACTCAAGGATCTTGAAGATCATATATGTCTTTGGTT 1069
Query 1156 CACTAACGTTAACAAAGCTAGATCGTTGCTCCT-AACAGAGATTCATCTTCCTCGACCCA 1214
||||||||||||||||||||||||||||||||| || |||||| |||||||||||| ||
Sbjct 1070 CACTAACGTTAACAAAGCTAGATCGTTGCTCCTTAA-AGAGATCCATCTTCCTCGAACC- 1127
Query 1215 GCCATGTTATTCTGTAGATAGAACAAATTA 1244
| |||||| |||||||| |||||||||||
Sbjct 1128 -C-ATGTTAGTCTGTAGAGAGAACAAATTA 1155
> Ahg904903 jgi|Araly1|904903|Al_scaffold_0003_2031
Length=1083
Score = 990 bits (536), Expect = 0.0
Identities = 762/871 (87%), Gaps = 16/871 (2%)
Strand=Plus/Plus
Query 338 GAGCTGCTTCTTTCTCAAGTGCTCCAACCAAATAAAGAATGTGTTCAAGAAG--C-TA-- 392
|||||| |||| ||||||| |||| ||||||| || ||||| |||||||||| | ||
Sbjct 199 GAGCTGTTTCTCTCTCAAGAGCTCAAACCAAACAATGAATGCGTTCAAGAAGCTCTTAGT 258
Query 393 -TTAGACACGTCAAGCAAACTACACTTACTAATCTCGTTTCTACTTACTTCCAACACAGC 451
||||||||| |||||||||||||||||| ||||| | || ||||||||||||||||||
Sbjct 259 CTTAGACACGCCAAGCAAACTACACTTACCAATCTTATCTCCACTTACTTCCAACACAGC 318
Query 452 GAAGACGCTACCCGCCTTTGCTTAAATCTTTACCAAAACGTACACAGTGCTCGCCACCAC 511
||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| ||||
Sbjct 319 GAAGACGCTACCCGCTTTTGCTTGAATCTTTACCAAAACGTCCACAGTGCTCGCTGCCAC 378
Query 512 CTCTACACGCCCCTTTTAGACCTCTTCAACATCTTTCCCGGTGATTCAC-TCCCCGCCAT 570
|||||||| ||||| |||||||||||||| ||||||||| |||||| | | || |||||
Sbjct 379 CTCTACACACCCCTCTTAGACCTCTTCAAAATCTTTCCCCCTGATTCCCATTCC-GCCAT 437
Query 571 TGACGAGTCCCTATGTGACCTGGCATTCGACGTTTTTCTTAAGCTCGACACGTTTGAAAA 630
|||||||||| | ||| || | || ||||| ||||| |||||||| ||||||||||||||
Sbjct 438 TGACGAGTCCTTCTGTAACTTAGCCTTCGATGTTTTCCTTAAGCTTGACACGTTTGAAAA 497
Query 631 CCCTTTCTCATCTCCTGAATCTTACAGCTTTCGAGACACCCAATTATGCTTCTCCCAGCT 690
||||||| |||||||||||||| ||||||||| |||||||||||||||||| | |||||
Sbjct 498 CCCTTTCGCATCTCCTGAATCTCACAGCTTTCAAGACACCCAATTATGCTTTTATCAGCT 557
Query 691 GAA-GCATAATCTGGACAGACGTCTTCGCAAGTCTAGGTCACGGGTCCGCCTCATCCACC 749
| | | || ||||||| ||| | || ||||||| |||||||||||||||| |||| |
Sbjct 558 GGCTG-ACAAGCTGGACACCCGTATCCGTAAGTCTAAGTCACGGGTCCGCCTCCTCCATC 616
Query 750 ATGCCACAGCTGGTTCTTCCTTATGTCTTGTTGCTGCTGTTGTTGCGGTTGCTGCTTCTG 809
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 617 ATGCCACAGCTGGTTCTGCCTTATGTCTTGTTACTGCTGTTGTTGCGGTTGCTGCTTCTG 676
Query 810 CAG-TTGTTATTGCCTCTCATGCACTTCCCATCCTTCTTGTTGTTGCAGGTCCCTTGTGC 868
| | || |||| |||| |||||||||||| | |||| |||||||||||||||||||||||
Sbjct 677 CGGCTT-TTATCGCCTATCATGCACTTCCAACCCTTGTTGTTGTTGCAGGTCCCTTGTGC 735
Query 869 AGTCCTTACCTCCCTCACAGTTTCAAGA-GAAAGGAGTTAACTAACATTTGTCAGCTCAA 927
| ||| |||||||||||||||||||||| | | ||||||| ||||||||| |||||| ||
Sbjct 736 ACTCCCTACCTCCCTCACAGTTTCAAGAAGGA-GGAGTTATCTAACATTTCTCAGCTAAA 794
Query 928 TGCTGCTTCCAAGGGTACTTTTGTGCTCAACAAAGATCTTGATACCATTGACCGTCTTGT 987
|| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 795 TGTTGCTGCCAAGGGTACTTTTGCGCTCAACAAAGATCTTGACACCATTGACCGTCTTGT 854
Query 988 CTCCCGTTTGCACACTGGAATTGAATACGACAAGTTTTTAATTCGACTTGGATTAGAGAG 1047
||||||||||||||| || |||||| |||||||| || | |||||||||||||| |||||
Sbjct 855 CTCCCGTTTGCACACGGGGATTGAAAACGACAAGCTTCTCATTCGACTTGGATTGGAGAG 914
Query 1048 GGGGAGGGACGTGCATTCAATTCAAGAGATTCTGAAACTGCTTCGCAAGAGCCACCTCCC 1107
||||||||||||| ||||| |||| ||| || |||||| |||||||||||||||| |
Sbjct 915 GGGGAGGGACGTGTATTCAGTTCAGGAGTTTGTGAAACAGCTTCGCAAGAGCCACGTTAA 974
Query 1108 CCTCACCCATCAACTCAAGGATCTTGAGGATCATATTTGCCTTTGGTTCACTAACGTTAA 1167
||||||||| |||||||||| |||||||||||||||||| | ||||||||||||||||||
Sbjct 975 CCTCACCCAGCAACTCAAGGTTCTTGAGGATCATATTTGTCGTTGGTTCACTAACGTTAA 1034
Query 1168 CAAAGCTAGATCGTTGCTCCT-AACAGAGAT 1197
|||| | |||||||||||||| || ||||||
Sbjct 1035 CAAATCCAGATCGTTGCTCCTTAA-AGAGAT 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5