BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19350.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904913 jgi|Araly1|904913|Al_scaffold_0003_2041 303 6e-82
> Ahg904913 jgi|Araly1|904913|Al_scaffold_0003_2041
Length=342
Score = 303 bits (164), Expect = 6e-82
Identities = 260/305 (85%), Gaps = 11/305 (4%)
Strand=Plus/Plus
Query 83 ATTCACCTCCTTTTGATCTTGCTTCTTTACCTCCC-AAAGAACAACGAGATTTGATTGGT 141
||| |||||| | |||||||||||||||||||||| ||| ||||||| | ||||||||
Sbjct 44 ATTTACCTCCATATGATCTTGCTTCTTTACCTCCCGAAA-CACAACGAAAGATGATTGGT 102
Query 142 GAAACTTTGTTCTTTATGGTGGAAGAACTTGAGCCACAGTTTGCACCAAAAATCACAGGA 201
|| ||||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 103 GAGACTTTGTACCAAATGGTGGAAGAACTTGAGCCACGGTTTGCACCAAAAATCACAGGA 162
Query 202 ATGATTCTTGAATTGGACCAAGACAAGGTCCTTCATCTGCTGGTAA-CACCTAAAGCCTT 260
|||||||||||| |||||||||||| |||| |||||||| ||| || ||||| ||||| |
Sbjct 163 ATGATTCTTGAACTGGACCAAGACAGGGTCTTTCATCTGATGG-AATCACCTGAAGCCCT 221
Query 261 CAAAGAAA-TGGTCAAAGAGGCAATGGAGGTCCTAGCGCACTCCTTTCTGCAACAGATGA 319
|||||||| || |||||||||||||| || || ||||| ||| ||| ||||||||||
Sbjct 222 CAAAGAAACTG-TCAAAGAGGCAATGAAGATCTTAGCGGACTGGATTCCGCAACAGATGC 280
Query 320 AAATTGCTAGGGGAAA-AAGATG-TTAGCAAGTTCCTACCTTCCATGCTCCCCGCTAAAC 377
|| | |||||| ||| |||||| || ||||||||||| |||||||||| || |||||||
Sbjct 281 AACTA-CTAGGG-AAAGAAGATGCTT-GCAAGTTCCTAGCTTCCATGCTTCCTGCTAAAC 337
Query 378 TTTGA 382
| |||
Sbjct 338 TATGA 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19802750691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5