BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19360.1
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479452 jgi|Araly1|479452|fgenesh2_kg.3__2153__AT3G19360.1 2091 0.0
> Ahg479452 jgi|Araly1|479452|fgenesh2_kg.3__2153__AT3G19360.1
Length=1392
Score = 2091 bits (1132), Expect = 0.0
Identities = 1316/1401 (94%), Gaps = 28/1401 (2%)
Strand=Plus/Plus
Query 1 AAAAACCCTAAATCGCGTTTCTTCTCTCAAATCTGCCGCCGCCATCATTGATCCAGTTAT 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AAAAACCCTAAATCGCGTTTCTTCTCTCAAATCTTCCGCCGCCATCATTGATCCAGTTAT 60
Query 61 GGATTCGAGTTACTCTGATTCTCGTCCCATGTTCGTGCAATCACCTTATGGTGGTTGGAA 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGATTCGAGTTACTCTGATCCTCGTCCCATGTTCGTGCAATCACCTTATGGTGGTTGGAA 120
Query 121 TCAAACACAGATGATTGATTCAATGGCTAATCCAATGAACAATGAACAAGGAGACTTGCA 180
|||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 121 TCAAACCCAGATGATTGATTCAATGGCTAATCCAACGAACAACGAACAAGGAGACTTGCA 180
Query 181 TTCACTATCTGAAT--C-A-CA-A-TCACAATCTCAACCGTCTCAGCAATTACAGCCTGC 234
|||||||||||||| | | || | ||||||||||||||| ||||||| |||||||||||
Sbjct 181 TTCACTATCTGAATCACAATCACAGTCACAATCTCAACCGCCTCAGCAGTTACAGCCTGC 240
Query 235 ATTGAAAAGGCCTAGACTTGTTGATGATAACTTGTTTAATCCTGCTTCGTCGTTTCCTCA 294
|||||||||||| |||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 241 ATTGAAAAGGCCAAGACTTGTTGATGATAACGTGTTTAATCCGGCTTCATCGTTTCCTCA 300
Query 295 GCCTTCGAGTAGCAATCCTTGGATGGTTCCATCTTTGAACCCTCCTCCTGTGAACAAAGG 354
|||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 301 GCCTTCGAGTAGTAATCCTTGGATGGTTCCGTCGTTAAACCCTCCTCCTGTGAACAAAGG 360
Query 355 GACTGCTAATATATTCTATAAGACTAGAATGTGTGCTAAATTCAGGGCAGGGACTTGTAG 414
||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 361 GACGGCTAATATATTCTATAAGACTAGAATGTGTGCGAAATTCAGGGCCGGGACTTGTAG 420
Query 415 GAATGGTGAACTCTGTAATTTTGCTCATGGGATTGAGGATTTGAGGCAGCCTCCGTCGAA 474
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 GAATGGTGAACTCTGTAATTTTGCTCATGGGATCGAGGATTTGAGGCAGCCTCCGTCGAA 480
Query 475 TTGGCAGGAAATTGTTGGACCTCCTCCTGCTGGTCAAGACa-gg-g-a-g--agggagag 528
||||||||||||||||||||||||| | |||||||||| | || | | | ||||||||
Sbjct 481 TTGGCAGGAAATTGTTGGACCTCCT-C--CTGGTCAAGATAGGGAGAAGGAAAGGGAGAG 537
Query 529 agagagggaaagggagagggaaagaCCGTCTTTGGCGCCTGTTGTGAATAATAATTGGGA 588
|| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 538 GGAAAGGGAGAGGGAGAGGGAAAGACCGTCATTGGCGCCTGTTGCGAATAATAATTGGGA 597
Query 589 AGATGATCAGAAGATAATCTTGAGGATGAAGCTTTGTAGGAAGTTTTGTTTTGGGGAAGA 648
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 598 AGATGATCAAAAGATAATCTTGAGGATGAAGCTTTGCAGGAAGTTTTGTTTTGGGGAAGA 657
Query 649 GTGTCCTTATGGGGACAGGTGCAATTTTATTCATGAGGATCTGTCAAAGTTTCGTGAGGA 708
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 GTGTCCTTATGGGGACAGGTGCAATTTCATTCATGAGGATCTGTCAAAGTTTCGTGAGGA 717
Query 709 CTCGGGGAAGTTGAGAGAGAGCTCGGTTATAAGTGTTGGTGCTACTGCTGCTGATCAACC 768
||||||||| |||||||||||||||||||||||||||||| || |||||||||||| |||
Sbjct 718 CTCGGGGAAATTGAGAGAGAGCTCGGTTATAAGTGTTGGTACTTCTGCTGCTGATCCACC 777
Query 769 ATCTGATACTGCTTCTAATCTTATTGAAGTAAATAGACAAGGAAGCATCCCGGTACCTGC 828
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATCTGATACTGCCTCGAATCATATTGAAGTAAATAGACAAGGAAGCATCCCGGTACCTGC 837
Query 829 ACCTATGAACAATGGTGGTGTTGTCAAGACTGTGTACTGGAAGACGAGGTTGTGCATGAA 888
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ACCTTTGAACAATGGTGGTGTTGTCAAGACTGTGTACTGGAAGACGAGGTTGTGCATGAA 897
Query 889 GTTTGACATCACGGGTCAATGTCCTTTTGGCGATAAGTGTCACTTTGCTCATGGCCAAGC 948
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 898 GTTTGACATCACGGGTCAATGCCCTTTTGGTGATAAGTGTCACTTTGCTCATGGCCAAAC 957
Query 949 AGAGTTGCATAACTCTGTTGGAAGGG-TAGAAGGAGAAGCTATGAACGCGGTA--GCGTC 1005
|||||||||||||||||||||||||| | || ||||||||| ||||||| || |||||
Sbjct 958 AGAGTTGCATAACTCTGTTGGAAGGGCT-GATGGAGAAGCTGTGAACGC--TACCGCGTC 1014
Query 1006 TGTGAATAAACAAGCAGTGGTACCTGCGAATGAAGCATTTGCAATGAAACCGATTACACA 1065
||||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1015 TGTGAGTAAACAAACAGTGGTACCTGCGAATGAAGCATTTGCAATGAAACCAACTACACA 1074
Query 1066 AGTAACAGCAGATTCCTCTGGTCTGAATGAAGAAGGGCGGCGAAAGAAGTGTTTGCTCAA 1125
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1075 AGTAACAGCTGATTCTTCTGGTCTGAACGAAGAAGGGCGGCGAAAGAAGTGTTTGCTCAA 1134
Query 1126 GTGGAGCGACTCCAAGAAGATTAACCGAATATATGGAGACTGGATCGATGATTTACCGGT 1185
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1135 GTGGAGCGACTCTAAGAAGATTAACCGAATCTATGGAGACTGGATCGATGATTTACCGGT 1194
Query 1186 GGGTCAAAAGTCGACAAAGCCAGTAGAGAGTTGAGTTTTCTAGCCTGGTTTCATTTGTCT 1245
||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1195 GGGTCAAAAGTCGTCAAAGCCAGTAGAGAGCTGAGTTTTCTAGCCTGGTTCCATTTGTCT 1254
Query 1246 CGTCCTTTTGATGATCAAAACTGATAAAGCTTTGGTCGAAAATTTTGAAGAGTAGAAACA 1305
||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1255 TGTC-TTTTGATGATCAAAAGTGATAAAGCTTTGGTCGGAAATTTTGAAGAGTAGAAACA 1313
Query 1306 CTCTTTATTTTG-TT-CATTAGCAATTCTTTGATTCGCTAT-AGCTTAGAATATT-GCTT 1361
|||||||||| | || ||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 1314 CTCTTTATTT-GATTTCATTAGCAATTCTTTGATTCGCTATTAGCTTAGAAT-TTCGCTT 1371
Query 1362 TTGTTATAATCTTTGATTACA 1382
||||| |||||||||||||||
Sbjct 1372 TTGTTGTAATCTTTGATTACA 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51770921286
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5