BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19370.1
Length=2436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318692 jgi|Araly1|318692|fgenesh1_pm.C_scaffold_3001708 2959 0.0
> Ahg318692 jgi|Araly1|318692|fgenesh1_pm.C_scaffold_3001708
Length=2178
Score = 2959 bits (1602), Expect = 0.0
Identities = 1827/1939 (94%), Gaps = 2/1939 (0%)
Strand=Plus/Plus
Query 147 AAGACATCTTACAGAGTCAATGGAAACAAACCAGTGGCGGTCGAGGAAAAAGATAGAATC 206
||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 12 AAGACATCTTACAGAATCAATGGAAACAAATCAGTGGCGGTCGAAGAAAAAGATAGAATC 71
Query 207 AGCTGCAGAAACACTCCAAGTTTCTTCTAGAAGAGGCAGAGGACAGGCACGTATGGTTCC 266
|| |||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |
Sbjct 72 TGCAGCAGAAACACTCCAAGCTTCTTCTAGAAGAAGCAGAGTACAGGCACGTATGGTTGC 131
Query 267 TCCTGTAAGTGGAGTTAGATCCGAGAGAGCTCGAAAAAGTCTAAGTGAGAAGCTAGAGAC 326
||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct 132 TCCAGTAAATGGAGTTAGACCCGATAGAGCTCGAAAAAGTCTAAGTGAGAAGCTAGACAC 191
Query 327 TGTAGCTTTAAACTCTCCTAAGAAAGATGCTCGTGTGAGTCTTTATGGCGAGAAAAGTGT 386
|||||| |||||||||||||| |||||||||||||||| |||||||||||| ||||||||
Sbjct 192 TGTAGCCTTAAACTCTCCTAAAAAAGATGCTCGTGTGAATCTTTATGGCGACAAAAGTGT 251
Query 387 AGTAGATGAGATTTTCCTAGAAGATGAAGAAATGGGTCATGAAACTGGTTTGAAGAATGG 446
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| |
Sbjct 252 AGTAGATGAGATTTTCCTTGAAGATGAAGAAATGGGTCTTGAAACTGGTTTGGGGAATAG 311
Query 447 AGAGTCGTCGCCTTTTTGTGGTGTATCGGACAAGCTTCTGCAGCGAATCGAGCTTCTTGG 506
||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 312 TGAGTCATCGCCTTTTTGTGGTGTATCCGACAGGCTTCTGCAGCGAATCGAGCTTCTTGG 371
Query 507 GAGAGACCATGAGGCAACGAGACTTGATAACAACAAGTTCAGGTCAATC-GAATCTATGA 565
|||||| || ||||||| ||| |||||||| ||||| |||||||||| | ||| ||||||
Sbjct 372 GAGAGATCACGAGGCAAAGAGGCTTGATAAAAACAATTTCAGGTCAA-CTGAAACTATGA 430
Query 566 AAAAGAGACAAGAAGAATCGGCATGTGATGATCTAGTTGATATGAAGACAAAGATTCAAA 625
|||||| |||||||||||| || ||||||||||| |||| |||||||||||| ||||||
Sbjct 431 AAAAGATACAAGAAGAATCTTCAGGTGATGATCTAATTGAGATGAAGACAAAGTTTCAAA 490
Query 626 CGTTAGCTGCGGAGAACACTCAGCTTAAGAAGTCTCTTGTGGCGAAAGAAGAGCTTGCGG 685
| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 491 CTTTAGCTGTGGAGAACTCTCAGCTTAAGAAATCTCTTGTGGCGAAAGAAGAGCTTGCGG 550
Query 686 TAAGTCTTCAAGAGCGTAAATTTCAGGTGGAATCAGAATTCGAAGCGTTAATGACTAGAT 745
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 551 TAAGTCTACAAGAGCGTAAATTTCAGGTGGAATCAGAATTTGAAGCGTTGATGACTAGAT 610
Query 746 TAGATTCAACGGAGAAAGAAAACGCATTCTTGAGATATGAGTATACTGTTCTTGAGAAAG 805
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 611 TAGATTCAACGGAGAAAGAAAACGCATTCTTGAGATATGAGTATAATGTTCTTGAGAAGG 670
Query 806 ATCTTCAGGTAAAAACAGAGGAAACAGAGCATACTCGCAGGTCTATGGAGCTAACGCATA 865
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 671 ATCTTGAGGTAAAAACAGAGGAAACAGAGCATACTCGTAGGTCTATGGAGCTAACGCATA 730
Query 866 AGCAGCAACTTAGGAATGTGAACAAGATTGTTGAGCTTGAAGCTGAATGCCAAAGGTTAA 925
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AACAACAACTTAGGAATGTGAACAAGATTGTTGAGCTTGAAGCTGAATGCCAAAGGTTAA 790
Query 926 GACTTCTCTTTCGAAAGAAGTTTCCAGAGAAGTCTATATCTATGAGGAATGAAGGTGAAG 985
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 791 GACTTCTGTTTCGAAAGAAGTTTCCAGAGAAGTCTATATCGATGAGGAATGAAGGTGAAG 850
Query 986 AAAAGAAGATGGAGATGAGAAGACGAAACGCTAATAAGAGCGATATGATGATGAGAGATG 1045
||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||
Sbjct 851 AAAAGAAGATGGAGATGAGAAGAAGAAACGCGAATAAGAGCGATTTGATGATGAGAGATG 910
Query 1046 AAGTTCAGAGCAGGAAGCTGAAGTATGATCTTTTGATGGAGCAGATTGGGAATGTTAGGG 1105
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 911 AAGTTCAGAGCAGGAAGCTTAAGTATGATCTGTTGATGGAGCAGATTGGGAATGTTAGGG 970
Query 1106 CAGAGAACAAGAATCTAATGGACATAATTATGAAGAAAAACATTGAGATCAAAGATCTTA 1165
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 971 CAGAGAACAAGAATCTAATGGACATAATTATGAAGAAAAACATGGAGATCAAAGATCTTA 1030
Query 1166 GCCGCGGGCAGAAACCGTTAGAGGCTTCGAGTTTCGATATTCAAAGCGAAAGTAGTGTGA 1225
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct 1031 GCCGCGGGCAGAAACCGTTAGAGGCTTCAAGTTTCGATATTCGAAGCGAAAGTAGTGTTA 1090
Query 1226 TGAGCCCCTGTGGTTCCAAGGAGATGAAGTTACTGATGGATGATTTTAATGAGATGGAGA 1285
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TTAGCCCTTGTGGTTCGAAGGAGATGAAGTTACTGATGGATGATTTTAATGAGATGGAGA 1150
Query 1286 AGTTAGCCATTGTGTGTACTGAGAAAGATCCAAGAGTGGATGATGAGAAGGAAGGATCTT 1345
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1151 AGTTAGCCATTGTGTGTACTGAGAAAGATCCAAGAGTGGATGATGAAAAGGAAGGATCTT 1210
Query 1346 TTGATTGGATTCAAGTTGTTTTGAGCGCTATAACGAAGCAAGAGAGGATATCGAAACGCG 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 TTGATTGGATTCAAGTTGTTTTGAGCGCTATAACGAAGCAAGAGAGGATATCGAAACGCG 1270
Query 1406 GTGTTAAAGAACTCTTACAAGACATTAAGATTGCTTTAGGATGTATGGATGAAAATGATA 1465
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1271 GTGTTAAAGAACTCTTACAAGACATCAAGATTGCTTTAGGATGTATGGATGAAAATTATA 1330
Query 1466 ATGTAGAAAGAAAGAAAGGTGAAGAAGATCCTCTCTGCATCACATGGAAATCTAATAACG 1525
||| || |||||| |||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1331 ATGCAGCAAGAAACAAAGGTAAAGAAGATCCTCTCTGCATCACATGGAAATCTCCTAGTG 1390
Query 1526 AATCGGGTCCAATGACTAAGGATGAGATCAAGAGACATTTGGGTTTGACGAAATCAGATA 1585
|||||||||||||||| ||||||||||||||||||||||||||| | || ||| ||||||
Sbjct 1391 AATCGGGTCCAATGACGAAGGATGAGATCAAGAGACATTTGGGTCTAACAAAAGCAGATA 1450
Query 1586 AGGTGGAGAAGATTGAATCTGATGAAAAGCAAGAACTGAGAAAGAAGCTTGAGGAATCAG 1645
|||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1451 AGGTGGAGAATATTGAATGTGATGAGAAGCAAGAACTGAGAAAGAAGCTTGAGGAATCAG 1510
Query 1646 TGGAGAAGATCAGAAACTTAGAAGCAGAGATGAAAACATTGAGAGAGAATAAGGAAAAGG 1705
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct 1511 AGGAGAAGATCAGAAACTTAGAAGCAGAGATCAAAACATTGAGAGAGAGTAAGGAAGCGT 1570
Query 1706 TAGAGGCAGAGATGGAAACGGAGAAATCGATGAAGGAAGATCTTGATACAAAGCTGAACA 1765
||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1571 TAGAGTCAGAGACGGAAACGGAGAAATCGATGAAGGGAGATCTTGATACAAATCTGAACA 1630
Query 1766 TAACAAGAGCTAACCTCAACGAGACACAGAAGAAGTTGTCTTCTCTTGAAGTAGAATTTG 1825
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1631 TAATAAGAGCTAAGCTCAACGAGACACAGAAGAAGTTGTCTTCTCTTGAAGTAGAACTTG 1690
Query 1826 ATTACAGAAAGAGCTGTTGTGAAGAACTCGAAGGGACTTGCATCGAGCTTCAGCTTCAGC 1885
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1691 ATTACAGAAAGAGCTGTTGTGAAGAACTCGAAGGAACTTGCATAGAGCTTCAGCTTCAGC 1750
Query 1886 TAGAAAGTGTTGAAACAAAGAAACCGACGCAGAGAAACAAAAACGGGTGGGATATAGCAA 1945
|||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1751 TAGAAAGTGTTGAAACGAAGAAATCGACGCAGAGAAACAAAAACGGATGGGATATAGCAA 1810
Query 1946 CAGCTTCTGTGAAGTTATCAGAGTGTCAAGAAACGATTACCAGTTTACGGAAGCAACTAA 2005
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1811 CAGCTTCTGTGAAGTTATCAGAGTGTCAAGAGACGATTACCAATTTACGGAAGCAACTAA 1870
Query 2006 GAGCGTTATCTACAACAGAAACAAGCAGCACCATTAAATTTCTACACAAAAGATCTTCTC 2065
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1871 GAGCGTTATCTACAACAGAAACAAGCAGCACCATGAAATTTCTACACAAAAGATCTTCTC 1930
Query 2066 TCCGGGAAAATATAGCAGA 2084
|||| |||||||||| |||
Sbjct 1931 TCCGAGAAAATATAGAAGA 1949
Score = 329 bits (178), Expect = 5e-89
Identities = 194/202 (96%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 2079 AGCAGAGGATGATACTAACAGAGTTGCTCAAGATGATGATGGTAACCGTTACAACGCTTT 2138
|||||||||||||| |||||||||| |||| |||||||||||||||| |||||| || ||
Sbjct 1977 AGCAGAGGATGATAATAACAGAGTTACTCATGATGATGATGGTAACCATTACAATGCATT 2036
Query 2139 GATCGTGTACGAACCAGTGAAGGCGAGAGGTGAGAAGATGGAGATGGTACCGAGAAAGAA 2198
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2037 GATAGTGTACGAACCAGTGAAGGCGAGAGGTGAGAAGATGGAGATGGTACAGAGAAAGAA 2096
Query 2199 GCAAGGATTAGGGTTCTTGAAAAAACTGTTGTTCAGGAGGAAAAGAGTGAGCAGCAAGAA 2258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 GCAAGGATTAGGGTTCTTGAAAAAACTGTTGTTCAGGAGGAAAAGAGTGAGCAGCAAGAA 2156
Query 2259 ATGTCTTGCCTTGACTATGTGA 2280
||||||||||||||||||||||
Sbjct 2157 ATGTCTTGCCTTGACTATGTGA 2178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91797490450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5