BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19380.1
Length=1708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479456 jgi|Araly1|479456|fgenesh2_kg.3__2157__AT3G19380.1 2287 0.0
Ahg474109 jgi|Araly1|474109|fgenesh2_kg.1__4063__AT1G49780.1 889 0.0
> Ahg479456 jgi|Araly1|479456|fgenesh2_kg.3__2157__AT3G19380.1
Length=1614
Score = 2287 bits (1238), Expect = 0.0
Identities = 1493/1610 (93%), Gaps = 42/1610 (3%)
Strand=Plus/Plus
Query 82 TATTAAATAATCCAGCAGGTAACAAAGTTATAAATGGCACACGTGTGGGCTCATA-CCCA 140
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 35 TATTAAAAAATCCAGCAGGTAACAAAGTTATAAATGGCACACGTGTGGGCTCATACCCCA 94
Query 141 GATAAG-CTCTCGTTCCTCATACTCTTAACGCTCACAACAAACAATCTCACctttcttct 199
|||||| |||||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct 95 GATAAGTGTCTCGTTCCTCATA---TTCACTCTCACAACAAACAATCTCACCTTTCTCCT 151
Query 200 tcttcttcttctctctGTTTCTCAA-GTTTCTTAATGCCTAGGAATATAGAACCATTGGA 258
|||||||| ||||||||||||| || ||||||||||||||| ||| || ||||||||||
Sbjct 152 TCTTCTTC-TCTCTCTGTTTCTGAATTTTTCTTAATGCCTAGAAATTTACAACCATTGGA 210
Query 259 TCTTGGAATCCAAATACCATATCATTTCAGATGTCCAATATCACTCGAACTTATGCAAGA 318
|||||||||||||||||| || |||||| |||||||||| || |||||||||||||||||
Sbjct 211 TCTTGGAATCCAAATACCGTACCATTTCCGATGTCCAATCTCTCTCGAACTTATGCAAGA 270
Query 319 CCCAGTCACCGTCTGCACCGGCCAAACCTACGACCGAGCCAGCATCGAGTCATGGGTCTC 378
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 CCCTGTCACCGTCTGCACCGGCCAAACCTACGACCGAGCCAGCATCGAGTCATGGGTCTC 330
Query 379 CATCGGTAACAACACGACATGTCCAGTCACACGAGCTCCTCTCTCCGACTTCACACTCAT 438
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 331 CATCGGTAACAACACAACCTGTCCAGTCACACGCGCTCCTCTCTCCGACTTCACACTCAT 390
Query 439 CCCTAACCACACTCTCCGTCGTCTCATCCAAGAATGGTGCGTCGCTAACCGCTCCAATGG 498
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 CCCCAACCACACTCTCCGTCGTCTCATCCAAGAATGGTGCGTCGCTAACCGCTCCAATGG 450
Query 499 AGTCGAACGTATCCCTACTCCTAAACAACCAGCTGATCCAACCTCTGTTCGTGCTCTTCT 558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 CGTCGAACGTATCCCTACTCCTAAACAACCAGCTGATCCAACCTCTGTTCGTGCTCTTCT 510
Query 559 CAGTCAAGCCTCTGCTATAACAGGAACCCACGTCTCTGTTCGTTCACGCGCCGCCGCTCT 618
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 511 CAGTCAAGCCTCCGCTATAACGGGAACTCACGTCTCTGTTCGTTCACGCGCCGCCGCTCT 570
Query 619 CCGCCGTTTACGTGGTTTCGCTCGTGATTCTGATAAAAATCGCGTTTTGATCGCAGCTCA 678
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 571 CCGCCGTTTACGTGGATTCGCTCGTGATTCTGATAAAAACCGCGTTTTGATCGCAGCTCA 630
Query 679 TAACGCTACAGAGATTTTGATTAAGATTCTGTTCTCTGAAACGACGTCGTCGGAGTTAGT 738
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 631 TAACGCTACAGAGGTTTTGATTAGGATTCTGTTCTCTGAAACGACGTCGTCGGAGTTGGT 690
Query 739 CTCTGAGTCTTTAGCTCTACTTGTTATGTTACCGATAACGGAGCCGAACCAGTTTGTTTC 798
||||||||| |||||||| ||||||||||||||||||||||| ||||| |||| |||||
Sbjct 691 CTCTGAGTCGTTAGCTCTTCTTGTTATGTTACCGATAACGGAACCGAATCAGTGCGTTTC 750
Query 799 GATATCGTCGGATCCGGGTCGGGTCGAGTTTTTGACCCGGTTGTTATTCGATTCGTCGAT 858
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 751 GATATCTTCGGATCCGGGTCGGGTCGAGTTTTTGACCCGGTTGTTATTCGATTCCTCGAT 810
Query 859 TGAAACACGCGTTAACGCCGCCGCGTTGATCGAGATTGTTTCGACGGGAACCAAATCGGC 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 811 CGAAACACGCGTTAACGCCGCCGCGTTGATCGAGATTGTTTCGACGGGAACCAAATCGAC 870
Query 919 GGACCTGAAA-G---G--TTCGATTTCGAATTCAGAATCTGTATTCGAAGGAGTTCTCGA 972
||| |||||| | | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 871 GGATCTGAAAGGAATGTTTTCGATTTCGAATTCTGAATCTGTATTCGAAGGAGTTCTCGA 930
Query 973 TCTTCTGAGAAATCCGATTTCGTCACGACGAGCTCTCAAAATCGGAATCAAAACTCTGTT 1032
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 TCTTCTGAGGAATCCGATTTCGTCACGACGAGCTCTCAAAATCGGAATCAAAACTCTGTT 990
Query 1033 CGCGCTCTG-TTCAGTGAAATCGACGCGACACATCGCGATCACAGCCGGTGCGCCGGAGA 1091
||||||||| || ||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 991 CGCGCTCTGCTT-AGTGAAATCCACGCGACACATAGCGATCACCGCCGGTGCGCCGGAGA 1049
Query 1092 TTCTAATAGACAGACTCGCGGCGGATTTCGATAGATGCGATACGGAGCGAGCCTTAGCGA 1151
||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||
Sbjct 1050 TTCTAATAGACAGACTCGCGGCGGATTTCGACAGGTGCGACACAGAGCGTGCCTTAGCGA 1109
Query 1152 CGGTGGAGCTACTCTGCCGAACGCCGGAAGGATGCGCGGCGTTCGGTGAGCACGCTTTAA 1211
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 1110 CGGTGGAGCTACTCTGCCGATCGCCGGAAGGATGCGCCGCGTTCGGAGAGCACGCTTTAA 1169
Query 1212 CGGTGCCGTTGTTAGTTAAAACGATATTGAGAGTTTCGGATCGCGCGACGGAGTATGCGG 1271
||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1170 CGGTGCCGTTGCTGGTGAAAACGATATTGAGAGTTTCGGATCGCGCGACGGAGTACGCGG 1229
Query 1272 CGGGGGCGTTGTTAGCGCTTTGTACGGCGGAGGAAAGGTGGAGGGAGGAAGCGGCGGGGG 1331
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||
Sbjct 1230 CGGGGGCGTTGTTAGCGCTTTGTACAGCGGAGGAAAGGTGGCGGGAGGAAGCGGCGGCGG 1289
Query 1332 CGGGAGTGGTGGTACAGTTGTTGTTGATGGTGCAGAGTGAGTGTACGGAGAGAGCGAAGA 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 CGGGAGTGGTGGTACAGTTGTTGTTGATGGTGCAGAGTGAGTGTACGGAGAGAGCGAAGA 1349
Query 1392 AGAAAGCACAGAAGTTATTGAAGCTTCTGAGAGATTCATGGCCTGACTACAATTCCTTCG 1451
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 AGAAAGCACAGAAGTTACTGAAGCTTCTGAGAGATTCATGGCCTGACTACAATTCCTTCG 1409
Query 1452 CTAACTCCGATGACTTTGGTTGCAGCAGCCAAGTGGTCCCTTTTTGATTTCTCGAttttt 1511
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1410 CTAACTCCGATGACTTTGGTTGCAGCAGCCAAGTGGTCCCTTTTTGATTT-T---TTT-- 1463
Query 1512 ttttttcaaaacattgttttttcacagtaattattaaaaaaatgtttttttttt--AATT 1569
|| || | || || | | | |||| || | |||||||||| ||||
Sbjct 1464 ------CA---CAGTAATTATT-A-ATT--TTAT-AATGTTTTTTTTTTTTTTTCTAATT 1509
Query 1570 AGAAGGAAAAATAATGGTCATTTTTTGTGTGTATTTGATGGAAAGATGTGAAGAAGAAAA 1629
|||||||||||| |||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 1510 AGAAGGAAAAAT---GGTCATTTTT-GTGTGTATGTGATGGGAAGATGTGAAGAAGAAA- 1564
Query 1630 GATAATATACAGAAGCTTTTTGATGACCATGAATTAGttttttttttttt 1679
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1565 GATAATATACAGAAACTTTTTGATGACCATGAATTAGTTTTTTTTTTTTT 1614
> Ahg474109 jgi|Araly1|474109|fgenesh2_kg.1__4063__AT1G49780.1
Length=1286
Score = 889 bits (481), Expect = 0.0
Identities = 999/1242 (80%), Gaps = 64/1242 (5%)
Strand=Plus/Plus
Query 232 AATGCCTAGGAATATAGAACCATTGGATCTTGGAATCCAAATACCATATCATTTCAGATG 291
|||||| ||||| |||| || |||||||| ||||||||||||||||| |||||||||||
Sbjct 7 AATGCCGGGGAATTTAGAGCCGTTGGATCTCGGAATCCAAATACCATACCATTTCAGATG 66
Query 292 TCCAATATCACTCGAACTTATG-CAAGA-CCCAGTCACCGTCTGCACCGGCCAAACCTAC 349
||||| ||||| || || ||| | || ||| || ||| ||| |||||||||||| |||
Sbjct 67 CCCAATCTCACTTGACCTAATGTC-CGATCCC-GTAACCATCTCCACCGGCCAAACTTAC 124
Query 350 GACCGAGCCAGCATCGAGTCATGGGTCTCCATCGGTAACAACACGACATGTCCAGTCACA 409
|||||| |||||||||| |||||| || | || || |||||| || ||||| ||||||
Sbjct 125 GACCGAACCAGCATCGACTCATGGATCGCTAT-GG--GCAACACCACTTGTCCTGTCACA 181
Query 410 CGAGCTC-CTCTCTCCGACTTCACACTCATCCCTAACCACACTCTCCGTCGTCTCATCCA 468
|| | || |||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 182 CGTG-TCGCTCTCTCCGACTTCACTCTCATCCCTAACCACACTCTCCGCCGTCTTATCCA 240
Query 469 AGAATGGTGCGTCGCTAACCGCTCCAATGGAGTCGAACGTATCCCTACTCCTAAACAACC 528
|||||||||||||||||||||||| || || || ||||| || ||||| || ||||||||
Sbjct 241 AGAATGGTGCGTCGCTAACCGCTCTAACGGCGTTGAACGGATTCCTACACCGAAACAACC 300
Query 529 AGCTGATCCAACCTCTGTTCG-TGCTCTTCTCAGTCAAGCCTCTGCTATAACAGGAACCC 587
|| ||||||| ||| ||| | | |||| || ||||||||||| || || || ||||| |
Sbjct 301 GGCGGATCCAATCTCCGTTAGGT-CTCTCCTTAGTCAAGCCTCCGCAATTACCGGAACTC 359
Query 588 ACGTCTCTGTTCGTTCACGCGCCGCCGCTCTCCGCCGTTT-ACGTGGTTTCGCTCGTGAT 646
||||||||||||| |||||||||||||| | || ||||| | | || || ||| | |||
Sbjct 360 ACGTCTCTGTTCGCTCACGCGCCGCCGCGATTCGTCGTTTGA-GAGGATTAGCTAGAGAT 418
Query 647 TCTGATAAAAATCGCGTTTTGATCGCAGCTCATAACGCTACAGAGATTTTGATTAAGATT 706
||| || ||||||||||||||||| | ||||||||| | |||||||||| | | ||||
Sbjct 419 AGTGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGAGAGATTTTGGTGAGGATT 478
Query 707 CTGTTCTC---TG---AAACGACGTCGTCG--G----AG-TTAGTCTCTGAGTCT-TTAG 752
||||| | || |||||||||||||| | || || || |||||||| || |
Sbjct 479 TTGTTCGCCGATGTTGAAACGACGTCGTCGTCGTCGGAGCTT-GTTTCTGAGTCGCTT-G 536
Query 753 CTCTACTTG-TTATGTTACCGATAACGGAGCCGAACCAGTTTGTTTCGATAT-CGTCGGA 810
|||| ||| || | || | || |||||| || | || || | || | |||||||
Sbjct 537 CTCTT-TTGGTTTTATTGCATATGACGGAGACGGA---GTGTGAAGCTAT-TGCGTCGGA 591
Query 811 TCCGGGTCGGGTCGAGTTTTTGACCCGGTTGTTATTCGATTCGTCGATTGAAAC-ACGCG 869
|||||||||||||| |||| ||||||||||||| || ||||| |||||||||| | | |
Sbjct 592 TCCGGGTCGGGTCGGGTTTATGACCCGGTTGTTGTTTGATTCTTCGATTGAAATTAGG-G 650
Query 870 TTAACGCCGCCGCGTTGATCGAGATTGT-TTCGACGGGAACCAAATCGGCGGACCTGAAA 928
||||||||||||||||||| ||||| || || ||| || | |||||| ||| ||||||
Sbjct 651 TTAACGCCGCCGCGTTGATTGAGATGGTGTT-GACCGGTTCGAAATCGATGGATCTGAAA 709
Query 929 G-GTTCGATTTC-GAATTCAGAATCTG-TATTCGAAGGAGTTCTCGATCTTCTGA-GAAA 984
| | ||||| | || | || || | | |||||||| |||||||||||||| | |||
Sbjct 710 CTGATA-ATTTCCGGATCC-GATTC-GATTTTCGAAGGCGTTCTCGATCTTCTCAAGAA- 765
Query 985 TCCGATTTCGTCACGACGAGCTCTCAAAATCGGAATCAAAACTCTGTTCGCGCTCTGT-T 1043
||||||||| || || |||||| | || |||||||||||| | | ||||| |||||| |
Sbjct 766 TCCGATTTCATCGCGGCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTCTGTCT 825
Query 1044 CAGTGAAATCGA-CGCGACA-CATCGCGATCACAGCCGGTGCGCCGGAGATTCTAATAGA 1101
| |||||| | | || |||| | |||||||| | ||||| || |||| |||| |||| ||
Sbjct 826 C-GTGAAA-CAAACGAGACATC-TCGCGATCTCCGCCGGAGCTCCGGGGATTTTAATCGA 882
Query 1102 CAGACTCGCGGCGGATTTCGATAGATGCGATACGGAGCGAGCCTTAGCGACGGTGGAGCT 1161
| | ||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||
Sbjct 883 CCGTCTCGCGGCGGATTTCGATAGATGTGATACAGAGCGGGGTTTAGCGACGGTGGAGCT 942
Query 1162 ACTCTGCCGAACGCCGGAAGGATGCGCGGCGTTCGGTGAGCACGCTTTAACGGTGCCGTT 1221
|||||||| ||||||||||| || ||||| |||||||| ||||| ||||||||| |
Sbjct 943 TCTCTGCCGGTTACCGGAAGGATGTGCTGCGTTTGGTGAGCATGCTTTGACGGTGCCGCT 1002
Query 1222 GTTAGTTAAAACGATATTGAGAGTTTCGGATCGCGCGACGGAGTATGCGGCGGGGGCGTT 1281
| || || |||||||||||||||||||| | ||||||||||| |||||||| |||||
Sbjct 1003 AATGGTGAAGACGATATTGAGAGTTTCGGAAAGAGCGACGGAGTACGCGGCGGGAGCGTT 1062
Query 1282 GTTAGCGCTTTGT--ACGGCGGAGGAAAGGTGGAGGGAGGAAGCGGCGGGGGCGGGAGTG 1339
||| | ||||||| |||||||||||| |||| || || || || |||| ||||||| ||
Sbjct 1063 GTT-G-GCTTTGTGTACGGCGGAGGAACGGTGTAGAGATGAGGCAGCGGCGGCGGGATTG 1120
Query 1340 GTGGTACAGTTGTTGTTGAT-GGTGCAGAGTGAGTGTACGGAGAGAGCGAAGAAGAAA-G 1397
||| ||||||||| | || |||||||||||| ||||||||||||||||||| |||| |
Sbjct 1121 GTGACGCAGTTGTTGCT-ATTGGTGCAGAGTGATTGTACGGAGAGAGCGAAGA-GAAAAG 1178
Query 1398 CACAGAAG-TTATTGAAGCTTCTGAGAGATTCATGGCCTGAC 1438
| |||| | || ||||||||||| |||||||| |||||||||
Sbjct 1179 CTCAGATGCTT-TTGAAGCTTCTCAGAGATTCTTGGCCTGAC 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64067792090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5