BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19390.1
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479457 jgi|Araly1|479457|fgenesh2_kg.3__2158__AT3G19390.1 2139 0.0
Ahg318695 jgi|Araly1|318695|fgenesh1_pm.C_scaffold_3001711 616 2e-175
> Ahg479457 jgi|Araly1|479457|fgenesh2_kg.3__2158__AT3G19390.1
Length=1401
Score = 2139 bits (1158), Expect = 0.0
Identities = 1325/1406 (94%), Gaps = 10/1406 (1%)
Strand=Plus/Plus
Query 29 AACAAATATGGCTACTTCAATCAAATCTATAACCCTAGCTCTCTTGATATTCTCAGTGTT 88
|||||||||||| ||| |||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 1 AACAAATATGGCAACTCCAATCAAATCCATAACCCTAGCTCTCTTGATCTTCTCAATGTT 60
Query 89 ACTAATCTCCTTGTCTCTCGGCTCCGTCACAGCGACGGAGACTACACGAAACGAGGCGGA 148
|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 61 ACTAATCTCCTTGTCTCTCGGCTCCGTCACAGCGGCGGATACGACACGAAACGAGGCGGA 120
Query 149 GGCACGACGGATGTATGAA-AGGTGGCTTGTTGAGAATCGGAAGAACTATAATGGTCTCG 207
|||||| |||||||| ||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 121 GGCACGGCGGATGTACGAACA-GTGGCTTGTTGAGAATCGAAAGAACTATAATGGTCTCG 179
Query 208 GAGAGAAAGAGAGACGCTTTGAGATCTTCAAAGACAACTTGAAGTTCGTCGAAGAGCACA 267
|||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 180 GAGAGAAAGAGACACGCTTTGAGATCTTCACAGACAACTTGAAGTACATCGAAGAGCACA 239
Query 268 GTTCCATCCCGAATCGGACTTACGAAGTCGGGTTGACCCGGTTCGCTGATTTGACTAACG 327
|||| ||||||||| ||||| ||||| ||||||||||||||||||||| | || ||||
Sbjct 240 ATTCCGTCCCGAATCAGACTTTTGAAGTAGGGTTGACCCGGTTCGCTGATCTAACGAACG 299
Query 328 ATGAGTTTCGTGCGATTTACTTGAGGAGCAAGATGGAGAGAACTAGGGTTCCGGTGAAGG 387
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 300 ATGAGTTTCGTGCGATGTACTTGAGAAGTAAGATGGAGAGAACTAGGGTTCCGGTGAAGG 359
Query 388 GAGAGAAGTATTTGTATAAGGTTGGAGATAGC-TTACCTGATGC-TATCGATTGGAGAGC 445
|||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||
Sbjct 360 GAGAGAGGTATTTGTATAAGGTTGGAGATA-CTTTACCTGAT-CAAATCGATTGGAGAGC 417
Query 446 TAAAGGTGCTGTTAATCCAGTCAAAGATCAA-GGATCCTGTGGAAGTTGTTGGGCGTTTT 504
|||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 418 TAAAGGTGCTGTGAATCCAGTCAAAGATCAAGGGA-ACTGTGGAAGTTGTTGGGCGTTTT 476
Query 505 CCGCGATTGGAGCGGTTGAAGGTATAAATCAGATTAAGACAGGAGAGTTGATATCTTTGT 564
| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 477 CGGCGATTGGAGCGGTTGAAGGGATAAACCAGATTAAGACAGGAGAGTTGATATCTCTGT 536
Query 565 CTGAGCAAGAACTTGTTGATTGTGACACAAGTTACAATGATGGATGTGGTGGAGGTCTTA 624
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 537 CGGAGCAAGAACTTGTTGATTGTGACACAAGTTACAATGGTGGATGTGGTGGAGGTCTTA 596
Query 625 TGGATTATGCTTTTAAGTTCATTATTGAAAACGGTGGTATTGATACAGAGGAAGATTATC 684
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGGATTATGCTTTTAAGTTTATTATTGAAAACGGTGGTATTGATACAGAGGAAGATTATC 656
Query 685 CTTATATTGCAACTGATGTTAACGTGTGCAATTCTGATAAGAAGAACACTCGTGTTGTTA 744
|||||| ||||||||||| |||| | ||||||||||| |||||||| ||||||||||||
Sbjct 657 CTTATACTGCAACTGATGATAACATTTGCAATTCTGACAAGAAGAATTCTCGTGTTGTTA 716
Query 745 CCATCGATGGTTATGAGGATGTTCCTCAAAACGATGAGAAGTCTTTGAAGAAGGCTCTTG 804
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 717 CTATTGATGGTTATGAGGATGTTCCTCAAAACGATGAGAAGTCTTTAAAGAAGGCTCTTG 776
Query 805 CTAATCAACCTATTAGTGTTGCCATTGAAGCTGGTGGCAGAGCTTTCCAGCTTTACACAT 864
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct 777 CTAATCAACCTATTAGTGTCGCCATTGAAGCTGGTGGCCGAGCTTTCCAGCTTTACAAAT 836
Query 865 CTGGTGTGTTTACAGGAACATGTGGAACATCTTTGGACCATGGTGTTGTAGCTGTGGGAT 924
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 837 CTGGTGTGTTTACAGGAACATGTGGAACATCTTTGGACCATGGTGTGGTAGCTGTGGGAT 896
Query 925 ACGGATCAGAAGGTGGTCAAGACTACTGGATTGTTCGTAACTCATGGGGATCAAACTGGG 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ACGGATCAGAAGGTGGTCAAGACTACTGGATTGTTCGTAACTCATGGGGATCAAACTGGG 956
Query 985 GAGAAAGCGGATACTTTAAGCTCGAACGTAACATCAAAGAGTCATCAGGGAAATGCGGTG 1044
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 957 GAGAAAGCGGATATTTTAAGCTTGAACGTAACATCAAAGAGTCATCAGGGAAATGCGGTG 1016
Query 1045 TGGCGATGATGGCTTCTTACCCTACCAAATCATCAGGCTCAAACCCACCAAAACCGCCAG 1104
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TGGCGATGATGGCTTCTTACCCTACCAAATCATCAGGCTCAAACCCACCAAAACCGCCAC 1076
Query 1105 CGCCTTCACCGGTTGTTTGTGACAAGTCTAACACTTGTCCAGCTAAGTCCACTTGTTGTT 1164
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CACCTTCACCGGTTGTTTGTGACAAGTCTAACACTTGTCCAGCTAAGTCCACTTGTTGTT 1136
Query 1165 GCCTATATGAGTACAATGGTAAATGCTATAGCTGGGGATGTTGTCCGTATGAGTCAGCCA 1224
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GTCTATATGAGTACAATAGTAAATGCTATAGCTGGGGATGTTGTCCGTATGAGTCAGCCA 1196
Query 1225 CTTGTTGCGATGATGGTTCTAGCTGCTGCCCCCAGTCATACCCTGTCTGCGATTTAAAGG 1284
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1197 CTTGCTGCGATGATGGCTCTAGCTGCTGCCCTCAGTCATACCCTGTCTGCGATTTGAAGG 1256
Query 1285 CCAATACTTGTAGAATGAAGGGAAACAGTCCGTTAAGCATAAAAGCTTTGACACGAGGAC 1344
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1257 CCAATACTTGTAGAATGAAGGGAAACAGTCCGTTAAGCATAAAAGCCTTGACACGAGGAC 1316
Query 1345 CAGCGATTGCGACCACAAAGTCTACAAACATGCTAGTGGGCAGCGCTTGAGGAGAGAT-A 1403
||||||||||||||||||||||||||||| | || || ||||||||||||||||||| |
Sbjct 1317 CAGCGATTGCGACCACAAAGTCTACAAACGTTCTTGTAAGCAGCGCTTGAGGAGAGATGA 1376
Query 1404 ATACAAACGAAGAACCGATTTGTTTT 1429
| || ||||||| ||||||||||||
Sbjct 1377 A-ACGAACGAAGCTCCGATTTGTTTT 1401
> Ahg318695 jgi|Araly1|318695|fgenesh1_pm.C_scaffold_3001711
Length=927
Score = 616 bits (333), Expect = 2e-175
Identities = 580/698 (83%), Gaps = 22/698 (3%)
Strand=Plus/Plus
Query 396 TATTTGTATAAGGTTGGAGATAGCTTACCTGATGCTATCGATTGGAGAGCTAAAGGTGCT 455
|||||||| || | ||||||| || ||||||| |||||||||||||| ||||||||
Sbjct 202 TATTTGTACAAAGAAGGAGATATTTTGCCTGATGAAATCGATTGGAGAGCGAAAGGTGCA 261
Query 456 GTTAAT-CCAGTCAAAGATCAAGGATCCTGTGGAAGTTGTTGGGCGTTTTCCGCGATTGG 514
||| | |||||||||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct 262 GTT-GTACCAGTCAAAGATCAAGGAAACTGTGGAAGTTGTTGGGCGTTTTCTGCGGTTGG 320
Query 515 AGCGGTTGAAGGTATAAATCAGATTAAGACAGGAGAGTTGATATCTTTGTCTGAGCAAGA 574
||| || ||||| ||||| ||||| ||||| ||||| |||||||||||||| || |||||
Sbjct 321 AGCAGTGGAAGGGATAAACCAGATCAAGACCGGAGAATTGATATCTTTGTCAGATCAAGA 380
Query 575 ACTTGTTGATTGTGACACAAG--TT-ACAATGATGGATGTGGTGGAGGTCTTATGGATTA 631
||| |||| ||||||| | | || || | |||||||| |||||||| ||||| ||
Sbjct 381 ACTCATTGACTGTGACAGAGGCTTTGTTAACGCTGGATGTGAAGGAGGTCTCATGGACTA 440
Query 632 TGCTTTTAAGTTCATTATTGAA-AACGGTGGTATTGATACAGAGGAAGATTATCCTTATA 690
||||||| ||||||||| | || || ||||||||||| ||||| ||||||| |||||||
Sbjct 441 TGCTTTTGAGTTCATTA-TCAAGAATGGTGGTATTGAGACAGATCAAGATTACCCTTATA 499
Query 691 TTGCAACTGATGTTAACGTGTGCAATTCTGATAAGAAG---AACACTCGTGTTGTTACCA 747
|| || ||| || |||||||||| | ||||||||| |||||||||||||||| |
Sbjct 500 CCGCCACCGATCTTGGCGTGTGCAATGCCGATAAGAAGAACAACACTCGTGTTGTTAAGA 559
Query 748 TCGATGGTTATGAGGATGTTCCTCAAAACGATGAGAAGTCTTTGAAGAAGGCTCTTGCTA 807
|||||||||| ||| ||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 560 TCGATGGTTACGAGTATGTTGCTCAAAACGATGAGAAGTCTTTGAAGAAAGCTGTTGCTC 619
Query 808 ATCAACCTATTAGTGTTGCCATTGAAGCTGGTGGC-AGAGCTTTCCAGCTTTACACATCT 866
|||||||| || |||||||||||||||| || || | ||||||| ||||||||| |||
Sbjct 620 ATCAACCTGTTGGTGTTGCCATTGAAGCCAGTAGCCA-AGCTTTCAAGCTTTACAAATCC 678
Query 867 GGTGTGTTTACAGGAACATGTGGAACATCTTTGGACCATGGTGTTGTAGCTG-T-GGGAT 924
||||||||||||||||||||||||| || ||||||||||||||| |||| || | ||| |
Sbjct 679 GGTGTGTTTACAGGAACATGTGGAATATATTTGGACCATGGTGTGGTAG-TGGTTGGG-T 736
Query 925 ACGGATCAG-AAGGTGGTCAAGACTACTGGATTGTTCGTAACTCATGGGGATCAAACTGG 983
| ||| | ||| |||| |||| |||||||| ||||||| |||||||||| || |||
Sbjct 737 ATGGAACCTCAAG-TGGTGAAGATTACTGGATCATTCGTAATTCATGGGGATTGAATTGG 795
Query 984 GGAGA-AAGCGGATACT-TTAAGCTCGAACGTAACATCAAAGAGTCATCAGGGAAATGCG 1041
||||| || ||| || | |||||||| ||||||||||| | || |||| ||||||||||
Sbjct 796 GGAGATAA-CGGTTA-TGTTAAGCTCCAACGTAACATCGATGATTCATTTGGGAAATGCG 853
Query 1042 GTGTGGCGATGATGGCTTCTTACCCTACCAAATCATCA 1079
|||| || |||||| |||||||||| ||||||||||||
Sbjct 854 GTGTAGCAATGATGCCTTCTTACCCAACCAAATCATCA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61972828615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5