BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19400.1 Length=1253 Score E Sequences producing significant alignments: (Bits) Value Ahg318695 jgi|Araly1|318695|fgenesh1_pm.C_scaffold_3001711 1029 0.0 > Ahg318695 jgi|Araly1|318695|fgenesh1_pm.C_scaffold_3001711 Length=927 Score = 1029 bits (557), Expect = 0.0 Identities = 695/761 (91%), Gaps = 11/761 (1%) Strand=Plus/Plus Query 377 GAA-CTAAAGA-TTCGGTGAAAACTGAGAGATATTTGTACAAAGAAGGAGATGTTTTGCC 434 ||| ||||||| ||| ||||| |||| |||||||||||||||||||||||| ||||||| Sbjct 172 GAACCTAAAGATTTC-ATGAAAGCTGACAGATATTTGTACAAAGAAGGAGATATTTTGCC 230 Query 435 TGATGAAGTAGATTGGAGAGCGAATGGCGCAGTTGTTTCAGTCAAAGATCAAGGAAACTG 494 ||||||| | |||||||||||||| || |||||||| |||||||||||||||||||||| Sbjct 231 TGATGAAATCGATTGGAGAGCGAAAGGTGCAGTTGTACCAGTCAAAGATCAAGGAAACTG 290 Query 495 TGGAAGTTGTTGGGCGTTTTCTGCGGTTGGAGCAGTGGAAGGGATCAACCAGATCACTAC 554 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 291 TGGAAGTTGTTGGGCGTTTTCTGCGGTTGGAGCAGTGGAAGGGATAAACCAGATCAAGAC 350 Query 555 CGGAGAGTTGATATCTTTGTCGGAGCAAGAACTCGTTGACTGTGACAGAGGTTTTGTCAA 614 |||||| |||||||||||||| || ||||||||| |||||||||||||||| ||||| || Sbjct 351 CGGAGAATTGATATCTTTGTCAGATCAAGAACTCATTGACTGTGACAGAGGCTTTGTTAA 410 Query 615 CGCTGGATGTGATGGAGGTATCATGAACTATGCTTTTGAGTTCATTATGAAAAATGGTGG 674 |||||||||||| |||||| ||||| |||||||||||||||||||||| || |||||||| Sbjct 411 CGCTGGATGTGAAGGAGGTCTCATGGACTATGCTTTTGAGTTCATTATCAAGAATGGTGG 470 Query 675 TATTGAGACAGATCAAGATTACCCTTATAACGCCAACGATCTTGGCTTGTGCAATGCAGA 734 ||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||| || Sbjct 471 TATTGAGACAGATCAAGATTACCCTTATACCGCCACCGATCTTGGCGTGTGCAATGCCGA 530 Query 735 TAAGAATAACAATACTCGTGTTGTTACA-ATTGATGGTTATGAAG-ATGTTCCT-AGAGA 791 |||||| ||||| ||||||||||||| | || |||||||| || | ||||| || | | | Sbjct 531 TAAGAAGAACAACACTCGTGTTGTTA-AGATCGATGGTTACGA-GTATGTTGCTCAAA-A 587 Query 792 CGATGAGAAGTCTTTGAA-AAAGGCTGTTGCTCATCAACCTGTTAGTGTTGCTATTGAAG 850 |||||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||||| Sbjct 588 CGATGAGAAGTCTTTGAAGAAAG-CTGTTGCTCATCAACCTGTTGGTGTTGCCATTGAAG 646 Query 851 CTAGTAGCCAAGCTTTCCAGCTTTACAAATCCGGTGTGATGACAGGAACATGTGGAATAT 910 | ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||| Sbjct 647 CCAGTAGCCAAGCTTTCAAGCTTTACAAATCCGGTGTGTTTACAGGAACATGTGGAATAT 706 Query 911 CTTTGGACCATGGTGTAGTAGTGGTTGGATATGGATCCACAAGTGGTGAAGATTATTGGA 970 ||||||||||||||| ||||||||||| |||||| || |||||||||||||||| |||| Sbjct 707 ATTTGGACCATGGTGTGGTAGTGGTTGGGTATGGAACCTCAAGTGGTGAAGATTACTGGA 766 Query 971 TCATTCGCAATTCATGGGGGTTGAATTGGGGAGATAGCGGTTACGTTAAGCTCCAACGTA 1030 ||||||| ||||||||||| |||||||||||||||| |||||| |||||||||||||||| Sbjct 767 TCATTCGTAATTCATGGGGATTGAATTGGGGAGATAACGGTTATGTTAAGCTCCAACGTA 826 Query 1031 ACATCGATGATCCATTTGGGAAATGTGGTATAGCAATGATGCCTTCTTACCCGACCAAAT 1090 ||||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||||| Sbjct 827 ACATCGATGATTCATTTGGGAAATGCGGTGTAGCAATGATGCCTTCTTACCCAACCAAAT 886 Query 1091 CATCATTCCCATCGTCATTTGATTTGTTGTCTGAGATTTGA 1131 ||||||||||||||||||||||||| ||||||||||||||| Sbjct 887 CATCATTCCCATCGTCATTTGATTTTTTGTCTGAGATTTGA 927 Score = 231 bits (125), Expect = 7e-60 Identities = 155/170 (91%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 169 ATGTACGAGCAATGGCTTGTGGAGAATCGAAAGAACTATAATGGTCTTGGAGAGAAAGAG 228 |||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGTACGAGCGATGGCTCGTGGAGAATCGGAAGAACTATAATGGTCTTGGAGAGAAAGAG 60 Query 229 AGACGATTCAAGATCTTCAAAGACAACTTGAAGTTTGTCGATGAACACAATTCTGTTCCG 288 ||||||| ||||||||||||||| ||||||||||| | || |||||||||||| ||||| Sbjct 61 AGACGATGCAAGATCTTCAAAGAAAACTTGAAGTTCATAGACGAACACAATTCTCTTCCG 120 Query 289 GATCGGACTTTTGAAGTAGGGTTGACCAGGTTCGCTGATCTAACAAATGA 338 ||| |||||||||||| ||||||||| ||||||| |||||||||||||| Sbjct 121 AATCAGACTTTTGAAGTCGGGTTGACCCGGTTCGCAGATCTAACAAATGA 170 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46814942076 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5