BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19400.1
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318695 jgi|Araly1|318695|fgenesh1_pm.C_scaffold_3001711 1029 0.0
> Ahg318695 jgi|Araly1|318695|fgenesh1_pm.C_scaffold_3001711
Length=927
Score = 1029 bits (557), Expect = 0.0
Identities = 695/761 (91%), Gaps = 11/761 (1%)
Strand=Plus/Plus
Query 377 GAA-CTAAAGA-TTCGGTGAAAACTGAGAGATATTTGTACAAAGAAGGAGATGTTTTGCC 434
||| ||||||| ||| ||||| |||| |||||||||||||||||||||||| |||||||
Sbjct 172 GAACCTAAAGATTTC-ATGAAAGCTGACAGATATTTGTACAAAGAAGGAGATATTTTGCC 230
Query 435 TGATGAAGTAGATTGGAGAGCGAATGGCGCAGTTGTTTCAGTCAAAGATCAAGGAAACTG 494
||||||| | |||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 231 TGATGAAATCGATTGGAGAGCGAAAGGTGCAGTTGTACCAGTCAAAGATCAAGGAAACTG 290
Query 495 TGGAAGTTGTTGGGCGTTTTCTGCGGTTGGAGCAGTGGAAGGGATCAACCAGATCACTAC 554
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 291 TGGAAGTTGTTGGGCGTTTTCTGCGGTTGGAGCAGTGGAAGGGATAAACCAGATCAAGAC 350
Query 555 CGGAGAGTTGATATCTTTGTCGGAGCAAGAACTCGTTGACTGTGACAGAGGTTTTGTCAA 614
|||||| |||||||||||||| || ||||||||| |||||||||||||||| ||||| ||
Sbjct 351 CGGAGAATTGATATCTTTGTCAGATCAAGAACTCATTGACTGTGACAGAGGCTTTGTTAA 410
Query 615 CGCTGGATGTGATGGAGGTATCATGAACTATGCTTTTGAGTTCATTATGAAAAATGGTGG 674
|||||||||||| |||||| ||||| |||||||||||||||||||||| || ||||||||
Sbjct 411 CGCTGGATGTGAAGGAGGTCTCATGGACTATGCTTTTGAGTTCATTATCAAGAATGGTGG 470
Query 675 TATTGAGACAGATCAAGATTACCCTTATAACGCCAACGATCTTGGCTTGTGCAATGCAGA 734
||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||
Sbjct 471 TATTGAGACAGATCAAGATTACCCTTATACCGCCACCGATCTTGGCGTGTGCAATGCCGA 530
Query 735 TAAGAATAACAATACTCGTGTTGTTACA-ATTGATGGTTATGAAG-ATGTTCCT-AGAGA 791
|||||| ||||| ||||||||||||| | || |||||||| || | ||||| || | | |
Sbjct 531 TAAGAAGAACAACACTCGTGTTGTTA-AGATCGATGGTTACGA-GTATGTTGCTCAAA-A 587
Query 792 CGATGAGAAGTCTTTGAA-AAAGGCTGTTGCTCATCAACCTGTTAGTGTTGCTATTGAAG 850
|||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||
Sbjct 588 CGATGAGAAGTCTTTGAAGAAAG-CTGTTGCTCATCAACCTGTTGGTGTTGCCATTGAAG 646
Query 851 CTAGTAGCCAAGCTTTCCAGCTTTACAAATCCGGTGTGATGACAGGAACATGTGGAATAT 910
| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 647 CCAGTAGCCAAGCTTTCAAGCTTTACAAATCCGGTGTGTTTACAGGAACATGTGGAATAT 706
Query 911 CTTTGGACCATGGTGTAGTAGTGGTTGGATATGGATCCACAAGTGGTGAAGATTATTGGA 970
||||||||||||||| ||||||||||| |||||| || |||||||||||||||| ||||
Sbjct 707 ATTTGGACCATGGTGTGGTAGTGGTTGGGTATGGAACCTCAAGTGGTGAAGATTACTGGA 766
Query 971 TCATTCGCAATTCATGGGGGTTGAATTGGGGAGATAGCGGTTACGTTAAGCTCCAACGTA 1030
||||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||||
Sbjct 767 TCATTCGTAATTCATGGGGATTGAATTGGGGAGATAACGGTTATGTTAAGCTCCAACGTA 826
Query 1031 ACATCGATGATCCATTTGGGAAATGTGGTATAGCAATGATGCCTTCTTACCCGACCAAAT 1090
||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 827 ACATCGATGATTCATTTGGGAAATGCGGTGTAGCAATGATGCCTTCTTACCCAACCAAAT 886
Query 1091 CATCATTCCCATCGTCATTTGATTTGTTGTCTGAGATTTGA 1131
||||||||||||||||||||||||| |||||||||||||||
Sbjct 887 CATCATTCCCATCGTCATTTGATTTTTTGTCTGAGATTTGA 927
Score = 231 bits (125), Expect = 7e-60
Identities = 155/170 (91%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 169 ATGTACGAGCAATGGCTTGTGGAGAATCGAAAGAACTATAATGGTCTTGGAGAGAAAGAG 228
|||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTACGAGCGATGGCTCGTGGAGAATCGGAAGAACTATAATGGTCTTGGAGAGAAAGAG 60
Query 229 AGACGATTCAAGATCTTCAAAGACAACTTGAAGTTTGTCGATGAACACAATTCTGTTCCG 288
||||||| ||||||||||||||| ||||||||||| | || |||||||||||| |||||
Sbjct 61 AGACGATGCAAGATCTTCAAAGAAAACTTGAAGTTCATAGACGAACACAATTCTCTTCCG 120
Query 289 GATCGGACTTTTGAAGTAGGGTTGACCAGGTTCGCTGATCTAACAAATGA 338
||| |||||||||||| ||||||||| ||||||| ||||||||||||||
Sbjct 121 AATCAGACTTTTGAAGTCGGGTTGACCCGGTTCGCAGATCTAACAAATGA 170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46814942076
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5