BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19410.1 Length=1122 Score E Sequences producing significant alignments: (Bits) Value Ahg929832 jgi|Araly1|929832|scaffold_302289.1 1162 0.0 Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1 75.0 1e-12 > Ahg929832 jgi|Araly1|929832|scaffold_302289.1 Length=1182 Score = 1162 bits (629), Expect = 0.0 Identities = 991/1157 (86%), Gaps = 59/1157 (5%) Strand=Plus/Plus Query 1 ATGACGATACCCGAGCTGCCAAAGGATTTGATAGAGGAGATACTCTGTTACGTTCCGGCG 60 ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||| || Sbjct 23 ATGACGATACCTGAGCTTCCAAAGGTTTTGATAGAGGAGATACTCTGTTACGTACCGACG 82 Query 61 ACATATCTGAAACGATTACGTTCTACTTGCAAAGGATGGAACCGTTTATTCAAAGATGAT 120 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 83 ACATATCTCAAACGATTACGTTCTACTTGCAAAGAATGGAACCGTTTATTCAAAGATGAT 142 Query 121 CGAAGATTCGCCAA-AAAGCATTATGACAAAGCCGCAAAGCAGTTTCTACCCCTCATGTC 179 || ||||||| || |||||||| ||| |||||||||||||||| |||||| ||||| || Sbjct 143 CGGAGATTCG-AAAGAAAGCATTTTGATAAAGCCGCAAAGCAGTGTCTACCTCTCATATC 201 Query 180 AACC-A--A-C-GAA-G-AGCTTTGTGCGATGAGCGTCAATCTCCATGGAACGATACCAT 232 ||| | | | || | | | |||| ||||||| ||||||||||||||| || |||| Sbjct 202 GACCAAGTACCACAAGGTA-CCTTGTTTGATGAGCCTCAATCTCCATGGAATTATGCCAT 260 Query 233 CTTTAGAGG-TAAAAGATAAGCCTT-GGCTATTCGTTTCAGATTCTAAG----C-ATT-G 284 ||||||||| | |||| |||| || ||| | ||| ||||||||||||| | ||| | Sbjct 261 CTTTAGAGGTTGAAAG-TAAG-ATTAGGCGAGTCGATTCAGATTCTAAGTATCCAATTAG 318 Query 285 ---TGATATCG-AAATATCTCGAATCTTTCACAGTGGCGGCTTGTTGTTATGCTTCTCCC 340 | | || | |||| |||||| |||||||| ||||||||||||||||||||| ||||| Sbjct 319 TACTAAAATGGAAAAT-TCTCGAGTCTTTCACTGTGGCGGCTTGTTGTTATGCTCCTCCC 377 Query 341 GAGACGGCGAAAT-TTCAATCATAGTTTGGAACCCGTTAACTAGTGAAACCAGGTTGATT 399 ||||| || ||| | ||||| | |||||||||||||||||| |||||| ||||| || | Sbjct 378 AAGACGACG-AATCTGCAATCTTGGTTTGGAACCCGTTAACTGGTGAAAACAGGTGGA-T 435 Query 400 C-GAACCCGGAATCGTCGCGATAAAGGACGCAACTTTGTTCTTGGATACTA-T--CAAGA 455 | |||| |||||||||||||||||||||||| |||||||||||||||||| | ||||| Sbjct 436 CAAAACCGGGAATCGTCGCGATAAAGGACGCACCTTTGTTCTTGGATACTACTACCAAGA 495 Query 456 AGACaaaaaaaCCTACTACAAAATCTTGAGCTTTTATCTTGATAGCAAAGATTTCGAAAT 515 |||||||||| ||| |||||||||||||||||||||| ||| ||||| ||||||||||| Sbjct 496 AGACAAAAAACCCTGCTACAAAATCTTGAGCTTTTATAGTGACAGCAATGATTTCGAAAT 555 Query 516 CTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATATCTGTCCAGGCTTGTCCTT 575 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 556 CTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATATCTGTCCAGGCTGGTCCTT 615 Query 576 GCTATACTCT-GATCAATGCGTGTCTTTGAAGGGAAATACATACATGTTTGCTATAGATG 634 || | || || | ||||||||| |||||||||||||| ||||||||||||||| |||||| Sbjct 616 GCCAAACCCTTG-TCAATGCGTATCTTTGAAGGGAAAAACATACATGTTTGCTTTAGATG 674 Query 635 A--CTTAA--GTGT--ATCCTTGCTCAAATATGATTTTTCAACAGAGACATCTGTTCCTG 688 | | || |||| |||||||||||||||||||| ||||||||||| |||| | | || Sbjct 675 AAACAAAAACGTGTGTATCCTTGCTCAAATATGATTATTCAACAGAGAAATCTATACTTG 734 Query 689 TACCTCTTCCCTATAAAAGTCGTTCTTTTGAAGCTATTAGTCTTTCCGTGGTTAGAGAAG 748 | |||||||| || || ||||||| |||||||| | |||||||||||| |||||||||| Sbjct 735 TGCCTCTTCCATACAAGAGTCGTTGTTTTGAAGAGACTAGTCTTTCCGTTGTTAGAGAAG 794 Query 749 AGAAGCTCTCTGTGTTATTACAGCGAGATAAAAGTTCGAAA-ACTGAGATATGGGTGACA 807 |||| || || |||||||||||| |||||||||||| | || |||||||||||||||||| Sbjct 795 AGAAACTTTCAGTGTTATTACAGAGAGATAAAAGTT-GCAAGACTGAGATATGGGTGACA 853 Query 808 AATGTGATTGATGAAACCACCACCAAAGTGATGGTGGTGTCGTGGAGCAAGGTCTTATCA 867 |||| | || |||||||||||| ||||||||||||||||||||||||||| || Sbjct 854 AATG--A--GA-----CCACCACCAAAGCGATGGTGGTGTCGTGGAGCAAGGTCTTGGCA 904 Query 868 TTGGATTTGAGCCCTGATCTTAAAATTAGGTATGGA-GAAAGTTTCTTGCTGGACGAAGA 926 ||||||||||||||| |||| ||||| |||||| | | ||||||||| || || || || Sbjct 905 TTGGATTTGAGCCCTCTTCTTGAAATTTGGTATG-ATGGAAGTTTCTTTCTTGAGGAGGA 963 Query 927 GAAGAAAGTGATCATGATTTTTAATA-ACCGGATGGAAGAAGAGAACAAATCCGAAGACA 985 ||||||||| |||||||||| ||||| | |||| |||||||| |||||||||||||| Sbjct 964 GAAGAAAGTCATCATGATTTCTAATAGAT-GGATAGAAGAAGA---CAAATCCGAAGACA 1019 Query 986 AACTATACATTATTGGGGACGACGATAATAAAGCCACACAAGTATATACAATCCATGGAT 1045 | ||||||||| ||||||| |||| |||||||||||||||||||||||||||| |||||| Sbjct 1020 ATCTATACATTGTTGGGGAGGACGCTAATAAAGCCACACAAGTATATACAATCGATGGAT 1079 Query 1046 ATGGACCAGCTGTTTTTAACTATTTTCCAAGTTTGGTTCAAATCGAGCAAAGCTCTAGGC 1105 |||| ||||||||| ||| ||| |||||||||||||||||||||||| | |||| |||| Sbjct 1080 GTGGATCAGCTGTTTATAATTATGTTCCAAGTTTGGTTCAAATCGAGCGA-GCTCGAGGC 1138 Query 1106 AAGAGGAAAAGAGTTGA 1122 ||||||||||||||||| Sbjct 1139 AAGAGGAAAAGAGTTGA 1155 > Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1 Length=1546 Score = 75.0 bits (40), Expect = 1e-12 Identities = 101/128 (79%), Gaps = 13/128 (10%) Strand=Plus/Plus Query 636 CTTAAGTGTATCCTTGCTCAAATATGATTTTTCAACAGAGACATCTGTTCCTGT-AC-CT 693 |||||| ||||||||||||||||||||||||||||||||| || || ||||| || || Sbjct 209 CTTAAGCCTATCCTTGCTCAAATATGATTTTTCAACAGAGAAATATGAACCTGTGACTCT 268 Query 694 -C-TT--CCCTATAAAAGTCG-TTCTTTT-G--AAGCT-ATTAGTCTTTCCGTGGTTAGA 744 | || |||| | | | | || |||| | ||||| ||| |||||||||| |||||| Sbjct 269 TCCTTTTCCCTCTCAC-GCCCATTGTTTTAGGGAAGCTCATT-GTCTTTCCGTTGTTAGA 326 Query 745 GAAGAGAA 752 | |||||| Sbjct 327 GGAGAGAA 334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41820839949 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5