BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19410.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929832 jgi|Araly1|929832|scaffold_302289.1 1162 0.0
Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1 75.0 1e-12
> Ahg929832 jgi|Araly1|929832|scaffold_302289.1
Length=1182
Score = 1162 bits (629), Expect = 0.0
Identities = 991/1157 (86%), Gaps = 59/1157 (5%)
Strand=Plus/Plus
Query 1 ATGACGATACCCGAGCTGCCAAAGGATTTGATAGAGGAGATACTCTGTTACGTTCCGGCG 60
||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 23 ATGACGATACCTGAGCTTCCAAAGGTTTTGATAGAGGAGATACTCTGTTACGTACCGACG 82
Query 61 ACATATCTGAAACGATTACGTTCTACTTGCAAAGGATGGAACCGTTTATTCAAAGATGAT 120
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 83 ACATATCTCAAACGATTACGTTCTACTTGCAAAGAATGGAACCGTTTATTCAAAGATGAT 142
Query 121 CGAAGATTCGCCAA-AAAGCATTATGACAAAGCCGCAAAGCAGTTTCTACCCCTCATGTC 179
|| ||||||| || |||||||| ||| |||||||||||||||| |||||| ||||| ||
Sbjct 143 CGGAGATTCG-AAAGAAAGCATTTTGATAAAGCCGCAAAGCAGTGTCTACCTCTCATATC 201
Query 180 AACC-A--A-C-GAA-G-AGCTTTGTGCGATGAGCGTCAATCTCCATGGAACGATACCAT 232
||| | | | || | | | |||| ||||||| ||||||||||||||| || ||||
Sbjct 202 GACCAAGTACCACAAGGTA-CCTTGTTTGATGAGCCTCAATCTCCATGGAATTATGCCAT 260
Query 233 CTTTAGAGG-TAAAAGATAAGCCTT-GGCTATTCGTTTCAGATTCTAAG----C-ATT-G 284
||||||||| | |||| |||| || ||| | ||| ||||||||||||| | ||| |
Sbjct 261 CTTTAGAGGTTGAAAG-TAAG-ATTAGGCGAGTCGATTCAGATTCTAAGTATCCAATTAG 318
Query 285 ---TGATATCG-AAATATCTCGAATCTTTCACAGTGGCGGCTTGTTGTTATGCTTCTCCC 340
| | || | |||| |||||| |||||||| ||||||||||||||||||||| |||||
Sbjct 319 TACTAAAATGGAAAAT-TCTCGAGTCTTTCACTGTGGCGGCTTGTTGTTATGCTCCTCCC 377
Query 341 GAGACGGCGAAAT-TTCAATCATAGTTTGGAACCCGTTAACTAGTGAAACCAGGTTGATT 399
||||| || ||| | ||||| | |||||||||||||||||| |||||| ||||| || |
Sbjct 378 AAGACGACG-AATCTGCAATCTTGGTTTGGAACCCGTTAACTGGTGAAAACAGGTGGA-T 435
Query 400 C-GAACCCGGAATCGTCGCGATAAAGGACGCAACTTTGTTCTTGGATACTA-T--CAAGA 455
| |||| |||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 436 CAAAACCGGGAATCGTCGCGATAAAGGACGCACCTTTGTTCTTGGATACTACTACCAAGA 495
Query 456 AGACaaaaaaaCCTACTACAAAATCTTGAGCTTTTATCTTGATAGCAAAGATTTCGAAAT 515
|||||||||| ||| |||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 496 AGACAAAAAACCCTGCTACAAAATCTTGAGCTTTTATAGTGACAGCAATGATTTCGAAAT 555
Query 516 CTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATATCTGTCCAGGCTTGTCCTT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 556 CTTCGAGTTTAACTCTGATTCATGGAGGTTTATTGATGATATCTGTCCAGGCTGGTCCTT 615
Query 576 GCTATACTCT-GATCAATGCGTGTCTTTGAAGGGAAATACATACATGTTTGCTATAGATG 634
|| | || || | ||||||||| |||||||||||||| ||||||||||||||| ||||||
Sbjct 616 GCCAAACCCTTG-TCAATGCGTATCTTTGAAGGGAAAAACATACATGTTTGCTTTAGATG 674
Query 635 A--CTTAA--GTGT--ATCCTTGCTCAAATATGATTTTTCAACAGAGACATCTGTTCCTG 688
| | || |||| |||||||||||||||||||| ||||||||||| |||| | | ||
Sbjct 675 AAACAAAAACGTGTGTATCCTTGCTCAAATATGATTATTCAACAGAGAAATCTATACTTG 734
Query 689 TACCTCTTCCCTATAAAAGTCGTTCTTTTGAAGCTATTAGTCTTTCCGTGGTTAGAGAAG 748
| |||||||| || || ||||||| |||||||| | |||||||||||| ||||||||||
Sbjct 735 TGCCTCTTCCATACAAGAGTCGTTGTTTTGAAGAGACTAGTCTTTCCGTTGTTAGAGAAG 794
Query 749 AGAAGCTCTCTGTGTTATTACAGCGAGATAAAAGTTCGAAA-ACTGAGATATGGGTGACA 807
|||| || || |||||||||||| |||||||||||| | || ||||||||||||||||||
Sbjct 795 AGAAACTTTCAGTGTTATTACAGAGAGATAAAAGTT-GCAAGACTGAGATATGGGTGACA 853
Query 808 AATGTGATTGATGAAACCACCACCAAAGTGATGGTGGTGTCGTGGAGCAAGGTCTTATCA 867
|||| | || |||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 854 AATG--A--GA-----CCACCACCAAAGCGATGGTGGTGTCGTGGAGCAAGGTCTTGGCA 904
Query 868 TTGGATTTGAGCCCTGATCTTAAAATTAGGTATGGA-GAAAGTTTCTTGCTGGACGAAGA 926
||||||||||||||| |||| ||||| |||||| | | ||||||||| || || || ||
Sbjct 905 TTGGATTTGAGCCCTCTTCTTGAAATTTGGTATG-ATGGAAGTTTCTTTCTTGAGGAGGA 963
Query 927 GAAGAAAGTGATCATGATTTTTAATA-ACCGGATGGAAGAAGAGAACAAATCCGAAGACA 985
||||||||| |||||||||| ||||| | |||| |||||||| ||||||||||||||
Sbjct 964 GAAGAAAGTCATCATGATTTCTAATAGAT-GGATAGAAGAAGA---CAAATCCGAAGACA 1019
Query 986 AACTATACATTATTGGGGACGACGATAATAAAGCCACACAAGTATATACAATCCATGGAT 1045
| ||||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||
Sbjct 1020 ATCTATACATTGTTGGGGAGGACGCTAATAAAGCCACACAAGTATATACAATCGATGGAT 1079
Query 1046 ATGGACCAGCTGTTTTTAACTATTTTCCAAGTTTGGTTCAAATCGAGCAAAGCTCTAGGC 1105
|||| ||||||||| ||| ||| |||||||||||||||||||||||| | |||| ||||
Sbjct 1080 GTGGATCAGCTGTTTATAATTATGTTCCAAGTTTGGTTCAAATCGAGCGA-GCTCGAGGC 1138
Query 1106 AAGAGGAAAAGAGTTGA 1122
|||||||||||||||||
Sbjct 1139 AAGAGGAAAAGAGTTGA 1155
> Ahg479334 jgi|Araly1|479334|fgenesh2_kg.3__2035__AT2G07130.1
Length=1546
Score = 75.0 bits (40), Expect = 1e-12
Identities = 101/128 (79%), Gaps = 13/128 (10%)
Strand=Plus/Plus
Query 636 CTTAAGTGTATCCTTGCTCAAATATGATTTTTCAACAGAGACATCTGTTCCTGT-AC-CT 693
|||||| ||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct 209 CTTAAGCCTATCCTTGCTCAAATATGATTTTTCAACAGAGAAATATGAACCTGTGACTCT 268
Query 694 -C-TT--CCCTATAAAAGTCG-TTCTTTT-G--AAGCT-ATTAGTCTTTCCGTGGTTAGA 744
| || |||| | | | | || |||| | ||||| ||| |||||||||| ||||||
Sbjct 269 TCCTTTTCCCTCTCAC-GCCCATTGTTTTAGGGAAGCTCATT-GTCTTTCCGTTGTTAGA 326
Query 745 GAAGAGAA 752
| ||||||
Sbjct 327 GGAGAGAA 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5