BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19420.1
Length=2338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479458 jgi|Araly1|479458|fgenesh2_kg.3__2159__AT3G19420.1 3031 0.0
> Ahg479458 jgi|Araly1|479458|fgenesh2_kg.3__2159__AT3G19420.1
Length=2126
Score = 3031 bits (1641), Expect = 0.0
Identities = 1820/1907 (95%), Gaps = 9/1907 (0%)
Strand=Plus/Plus
Query 291 CCTCCTCCTCCTCCTGTTGTTACTGCTGCAGAAGCTGGAAGCGATGATTCACCTAAAGGA 350
||| ||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 137 CCTGCTCCTCCTCCTCCTGTTACTGCTGTTGAAGCTGGAACCGATGATTCTCCTAAAGGA 196
Query 351 GTAGCATCAAAACTATCTGCTGCTGGGATTTCAA-ATTGGGCCAAAAACTTGAAAGTTCC 409
|| ||||||||||| ||||| |||||||| |||| | |||||||||||||||||||||||
Sbjct 197 GTTGCATCAAAACTGTCTGCCGCTGGGATATCAACA-TGGGCCAAAAACTTGAAAGTTCC 255
Query 410 ACAGCCTTTTGCTTCCACACAAAACGACTCTGGTGTCGAAAACACCGAGAAGTCTGCGTT 469
||||||||||||||||||||||||||||||| ||||||||| || || |||||||| ||
Sbjct 256 CCAGCCTTTTGCTTCCACACAAAACGACTCTGCTGTCGAAAATACTGAAAAGTCTGCATT 315
Query 470 TGCAAAGTTTACAAGCGGGTTAGGGATTCGTTTATCTCCGAAATCTCCTCAAACGAATGA 529
|||||||||||| || ||||||||||| |||||||||||||||||||||||| | ||||
Sbjct 316 TGCAAAGTTTACTAGTGGGTTAGGGATCCGTTTATCTCCGAAATCTCCTCAACCCAATG- 374
Query 530 CACTACCACAGAAGGAACTTCGAGTGCTACAGAATCTAGTTTTATTGGGACTATTACGAA 589
| ||||| ||||| ||||| |||||||||||||| ||||| ||||| || ||||||||
Sbjct 375 -A-GACCACGGAAGGTACTTCAAGTGCTACAGAATCCAGTTTCATTGGCACGATTACGAA 432
Query 590 AGGTTTGGTAGATACATCAAAGAATGCTGTCAAGGCAGTACAAGTCAAGGCTCGACATGC 649
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 433 AGGTTTGGTAGATACATCAAAGAATGCTGTCAAGGCAGTACAGGTCAAGGCTCGACACGC 492
Query 650 TGTATCACAGAACAAACGAAGATATCAGGAAGGAGGATTTGATTTGGATTTGACGTACAT 709
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 493 TGTATCCCAGAACAAACGAAGATACCAGGAAGGAGGATTTGATTTGGATTTGACGTACAT 552
Query 710 AACAGAGAACATCATTGCAATGGGGTTTCCTGCTGGTGATATGAGTTCTGGCTTTTTTGG 769
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 553 AACAGAGAACATAATTGCTATGGGGTTTCCTGCTGGTGATATGAGTTCTGGCTTTTTCGG 612
Query 770 ATATGTTGAGGGTTTCTACCGTAACCAAATGGAAGAAGTTATTAACTTTCTTGAAACTCA 829
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 ATATGTCGAGGGTTTCTACCGTAACCAAATGGAAGAAGTTATTAACTTTCTTGAAACTCA 672
Query 830 ACACAAGGGAAAATACAAGGTTTACAATCTTTGTTCAGAGAGATTGTATGATGTATCATT 889
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 673 ACACAAGGGAAAATACAAGGTTTACAATCTTTGTTCAGAGAGGTTGTATGATGTATCATT 732
Query 890 ATTTGAAGGGAAGGTGGCCAGTTTCCCATTTGATGATCATAATTGCCCGCCAATCCATTT 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 ATTTGAAGGGAAGGTGGCCAGTTTCCCATTTGATGATCATAATTGCCCGCCAATCCATTT 792
Query 950 GGTCACCTCATTCTGCCAAAGTGCATATTCATGGTTAAAGGAGGACATTGAGAACGTTGT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GGTCACCTCATTCTGCCAAAGTGCATATTCATGGTTAAAGGAGGACATTGAGAACGTTGT 852
Query 1010 GGTTGTTCACTGTAAGGCTGGCATGGCAAGGACAGGGCTTATGATATGCAGTCTTCTGTT 1069
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 853 GGTTGTTCACTGTAAGGCTGGCATGGCAAGGACAGGGCTTATGATATGTAGTCTTCTGTT 912
Query 1070 GTATCTGAAGTTCTTTCCCACTGCCGAAGAGTGTATGGACTTCTACAACCAGAAACGATG 1129
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 913 GTATCTGAAGTTCTTTCCGACTGCCGAAGAGTGCATGGACTTCTACAACCAGAAACGATG 972
Query 1130 TGTGGATGGAAAAGGACTTGTGCTACCCAGCCAAATTAGATATGTGAAATACTTTGAAAG 1189
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 973 TGTGGATGGAAAAGGACTTGTGCTACCCAGCCAAATCAGATACGTGAAATACTTTGAACG 1032
Query 1190 AATTTTGACCTACTTCAACGGTGAAAACCAACCAGGCCGTAGGTGTATGCTTAGGGGATT 1249
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1033 AATTTTGACCTACTTCAACGGGGAAAACCAACCAGGCCGTAGGTGTATGCTAAGGGGATT 1092
Query 1250 CCGGCTCCATAGGTGTCCCTATTGGATTAGGCCATCCATCACTATTTCAGATCACAATGG 1309
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1093 CCGGCTCCATAGGTGTCCCTATTGGATCAGGCCATCCATCACTATTTCAGATCACAATGG 1152
Query 1310 TGTTCTCTTTACCACGAAAAAGCATCCTCGGACCAAGGATCTCTCGCCTGAAGACTTTTG 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 TGTTCTCTTTACCACGAAAAAGCATCCTCGGACCAAGGATCTCTCGCCTGAAGACTTTTG 1212
Query 1370 GTTCAGTGCCCCAAAGAAAGGGGTTATGGTCTTTGCCTTACCTGGAGAGCCAGGTCTAAC 1429
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1213 GTTCAGTGCCCCAAAGAAAGGGGTTATGGTCTTTGCCTTACCCGGAGAGCCAGGTCTAAC 1272
Query 1430 AGAATTGGCTGGGGACTTCAAAATCCAATTTCATGACCGGCAAGGAGATTTCTACTGCTG 1489
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1273 AGAATTGGCTGGGGACTTCAAAATCCACTTTCATGACCGCCAAGGAGATTTTTACTGCTG 1332
Query 1490 GTTAAACACGACAATGATGGAAAATAGAGTGATCCTAAAAACCAGTGAGCTTGATGGGTT 1549
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1333 GTTAAACACGACAATGATGGAAAATAGAGTGATCCTAAAAACCAGTGAGCTTGACGGGTT 1392
Query 1550 TGACAAGAGGAAGCTACCATCGCCTGGATTTATGGTTGAAGTTGTTCTAGCTGATATAAA 1609
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1393 TGAAAAGAGGAAGCTACCGTCGCCTGGATTTATGGTTGAAGTTGTTCTTGCTGATATAAA 1452
Query 1610 TGCAACAAT-CCCTACGAACCCTAGTTCTGAAACAGCATCCAAAACACCGGAAGAAACTT 1668
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 TGCAACAATTCCC-ACGAACCCTAGTTCTGAAACAGCATCCAAAACACCGGAAGAAACTT 1511
Query 1669 CAGCAGCTAATTCGTCCCCTGTAGACGGCTCTGCATCGGTTCCAGGACCCGATAAAGAAA 1728
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1512 CAGCAGCTAATTCTTCCCCTGTAGACGGCTCTGCATCGGTTCCAGGACCCAATAAAGAAA 1571
Query 1729 CAGAGAATCCTGATAAGGACGATGTGTTCTCTGATAACGAAGGAGACTCAACTGGCCCGA 1788
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 CAGAGAATCCTGATAAAGACGATGTGTTCTCTGATAACGAAGGAGACTCAACTGGCCCGA 1631
Query 1789 CCAAAACCACATCATCGGCTTCTTCTCAAACCCCAGAAGCCAAAAAGAGCGCAGATGAAA 1848
| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1632 CGAAAACCACATCATCGGCTTCTTCTCAAACCCCAGAAGCCAAACAGAGGGCAGATGAAA 1691
Query 1849 CCGCTGTTCTGACTAAAGCGACAGAGAAAGTGTCTATTTCTGGAAACAAAGGATCATCAC 1908
|| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1692 CCTCTGCTCTGACTAAAGCGACTGAGAAAGTGTCTATTTCTGGAAACAAGGGATCATCAC 1751
Query 1909 AGCCGGTGCAAGGAGTAACTGTGAGCAAGGGTGAAGCAACAGAAAAACCCTCTGGGGCTG 1968
||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1752 AGCCGGTGCAAGGAGGAACTGTTAGCAAGGGTGAAGCAACAGAGAAACCCTCTGGGGCTG 1811
Query 1969 GGGTCAATGCTTCTTCAAGCTCAGAGAGTGAGTTCAAGGTTATGGCGGCTGATGCATCTG 2028
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1812 GGGTCAATGCTTCTTCAAGCTCAGAGAGTGAGTTCAAGGTAATGGCGGCTGATGCATCTG 1871
Query 2029 TGTTCTCATTTGGAGATGAAGACGACTTTGAAAGCGATTGAAGAAAGATAATCAAAAGCA 2088
||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 1872 TGTTCTCATTTGGAGATGAAGACGACTTTGAAAGCGATTGAAGAAAGCTGATAAAAAGCA 1931
Query 2089 GGAAGGATGTGTACATAAAAA-CAGGGAATGGTAAATCAATCAGATGATGGAATCCATTT 2147
|||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1932 AGAAG-ATGTGTACATAAAAAACAGGGAATTTTAAATCAATCAGATGATGGAATCCATTT 1990
Query 2148 ATTGTGTTGTGGTTTCGTGTTGTGATGTTGAATTCTACGGTCTTTTT 2194
||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1991 ATTGTGTTGTGGTTTTGTGTTGTGATGTTGAATTCCACGGTCTTTTT 2037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88064646440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5