BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19440.1
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318699 jgi|Araly1|318699|fgenesh1_pm.C_scaffold_3001715 2244 0.0
> Ahg318699 jgi|Araly1|318699|fgenesh1_pm.C_scaffold_3001715
Length=1434
Score = 2244 bits (1215), Expect = 0.0
Identities = 1363/1436 (95%), Gaps = 4/1436 (0%)
Strand=Plus/Plus
Query 84 ATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTTCAATCCTC-ATCGCC 142
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 1 ATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTCCAATCC-CAATCGCC 59
Query 143 AACTATCTCTACCTTCAAGAATCCAACCAAAGCATTGTCTGCGGCGGCTCATCAGTCTAC 202
|||||||| |||||||| ||||||||||| | |||||||| ||||||||||| | ||
Sbjct 60 TACTATCTCCGCCTTCAAGGATCCAACCAAATCCTTGTCTGCAGCGGCTCATCACTGTAG 119
Query 203 TCGCAGCTACAGTACAACTCAGACCGATGATTCGAGAGGGAAATGGTTAACTTTACCTCC 262
|||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 120 TCGCAGCTACAGTACAGCTCAGACCGATGATTCGAGAGGGAATTGGCTAACTTTACCTCC 179
Query 263 TTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTC 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTC 239
Query 323 TGTCAAATCTTCAACGGACAACTCAAAAACGACGGCGCTTAGGTGGATTCTTCGTTGTCG 382
|||||| |||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 240 CGTCAAAGCTTCAACGGATAACTCTAAAACGACGGCGCTTAGGTGGATTCTTCGCTGTCG 299
Query 383 TCCCGATTTACCCAGAACTCTCGTTCAGAAACTCTTCCGCTTAAGACAGGTTAGAAGAGA 442
||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 300 TCCAGATTTACCCAGGACTCTCGTTCAGAAACTCTTCCGTTTAAGACAGGTGAGAAGACA 359
Query 443 AATGTCTATGAGTGTTGATGGTGATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGC 502
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 AATGTCTCTGAGTGTTGATGGTCATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGC 419
Query 503 TAAGGAGTCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTATCGGTTGACAATGATAC 562
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 TAAGGAATCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTGTCGGTTGACAATGATAC 479
Query 563 GCCGCAGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGATGAAGAACGCAAATT 622
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 GCCGCCGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGAAGAAGAACGCAAATT 539
Query 623 CGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCCATTATTGTTTTGAATAAACCTCATGG 682
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 540 TGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCTATTATTGTTCTGAATAAACCTCATGG 599
Query 683 TTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATTGATGAACTCGCTGCCTCTTG 742
||||||||||||||||||||||||||||||||||||||| ||||| || |||||| ||||
Sbjct 600 TTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATCGATGAGCTTGCTGCCACTTG 659
Query 743 CTTGAAATTTGATAAATCAGAATCTCCCCGGCTGGTGCACAGACTTGACAGAGACTGTAG 802
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 CTTGACATTTGATAAATCAGAATCTCCCCGGCTGGTGCACCGACTTGACAGAGACTGTAG 719
Query 803 TGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCG 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCG 779
Query 863 AGAGAAAACAACTGGTGCATCCGCATATGGTGTCAAAAAGAACGTAAAATCCTTGAAAAG 922
||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 780 CGAGAAAACATGTGGTGCATCTGCATATGGTGTCAAAAAGAACATAAAATCCTTGAAAAG 839
Query 923 AAAATATATGGCACTTGTGATCGGGTGTCCACCACGTCAAAGGGGACAGATTTCAGCGCC 982
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 840 AAAATATATGGCACTTGTGATCGGGTGTCCAAGACGTCAAAAGGGACAGATTTCAGCGCC 899
Query 983 ACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGAACGTATCACTGTTAATGACAATGG 1042
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 ACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGATCGTATCACTGTTAATGACAATGG 959
Query 1043 AGAACTCGTTTCTACTCAGCATGCTATCACCGAATACCGAGTGATTGAATCTTCACCACA 1102
|||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||
Sbjct 960 AGAACTCGTTTCTACTCAGCATGCTATCACTGAATACAAAGTAATTGAATCTTCACCACA 1019
Query 1103 TGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACA 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACA 1079
Query 1163 CTGCGCTGAAGTGCTAGGAACACCGATAGTCGGGGACTACAAATACGGTTGGCAAGCTCA 1222
|||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1080 CTGCGCAGAAGTTCTAGGAACACCAATACTCGGGGACTACAAATACGGTTGGCAAGCTCA 1139
Query 1223 TAAAGCCCGGGAACCTTTTGTCTCTTCTGAAAACAACCCAACCAAGCAATCATCATCTCC 1282
|||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||
Sbjct 1140 TAAAGCCCGGGAACCTTTTGTCTCTTCTGAAACCACCCCGACCAAGCCATCATCATCTCC 1199
Query 1283 TTTTGGA-TTGGATCTGGATGGTGGAGATGTCTCTTCGAAACAGCCACACCTTCATCTCC 1341
|||||| ||| |||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1200 TTTTGGCCTTG-ATCTAGACGGTGGAGATGTCTCTTCAAAACAGCCACACCTTCATCTCC 1258
Query 1342 ATTCAAAGCAAATCGATCTGCCAAACATATCACAGCTCTTGGAGAAAATGCAGGTCTCTT 1401
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1259 ATTCAAAGCAAATCGATCTGCCAAACATATCTCAGCTCTTGGAGAAAATGCAGGTTTCTT 1318
Query 1402 CAGACTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCTCCATTGCCTAGTCATA 1461
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1319 CAGATTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCACCATTGCCTAGTCATA 1378
Query 1462 TGCAACTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAG 1517
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TGCAGCTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAG 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61401474940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5