BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19450.1
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479461 jgi|Araly1|479461|fgenesh2_kg.3__2162__AT3G19450.1 1958 0.0
Ahg944486 jgi|Araly1|944486|scaffold_700715.1 662 0.0
> Ahg479461 jgi|Araly1|479461|fgenesh2_kg.3__2162__AT3G19450.1
Length=1424
Score = 1958 bits (1060), Expect = 0.0
Identities = 1349/1478 (91%), Gaps = 61/1478 (4%)
Strand=Plus/Plus
Query 1 AAGAGGTTTGGTTGGTCGAGCTTACTGA-TTAAAAAATATACACGTCCACCAAATATTAA 59
|||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||
Sbjct 1 AAGAGGTTTGGTTGGTCGAGCTTACTGACTTAAAAAA-ATACACATCCACCAAAAATTAA 59
Query 60 AACAATATATCCCATTTTTCCTCCTCTCTTTTGGTATTACATTAATATTTTATTATTTCC 119
|| ||| ||| |||||||||||||||||||||||||||| || ||| | |||| ||||||
Sbjct 60 AATAATGTATTCCATTTTTCCTCCTCTCTTTTGGTATTAAATAAATCTCTTATAATTTCC 119
Query 120 CCATTTGCTCTGTATATATAAACATATGTCAATAGAGTGCCTCTACAGTCATGTTTCCAT 179
|||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 120 CCATTTGCTCTG--TATAT--ACATATGTCAATAGAGTGCCTCTATAGTCATGTTTCCAT 175
Query 180 AGACATAATCTCTCACCATTGTTTTTCTCTGCaaaactaaagaaacaaaaaaagaaaaat 239
|| | || | ||| | |||||||||||||| | ||||| |||| |
Sbjct 176 AG-----A-----CA-C--------TCT-T-CAAAACTAAAGAAA-ACAAAAA-AAAATT 212
Query 240 -cggagaaaccaagaaaa-aagaaatgggaagtgtagaagcaggagaaaagaagGCTTTA 297
||||||||||||||||| || ||||||||| || |||| |||||||||||||||||||
Sbjct 213 CCGGAGAAACCAAGAAAACAAAAAATGGGAA--GT-GAAGGAGGAGAAAAGAAGGCTTTA 269
Query 298 GGATGGGCTGCAAGAGATCCTTCTGGTGTTCTCT-CTCCTTACTCCTACACTTTAAGGAG 356
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 270 GGATGGGCTGCAAGAGATCCTTCTGGTGTTCT-TGCTCCTTACTCCTACACTTTAAGGAG 328
Query 357 CACAGGAGCAGATGATGTGTATATAAAGGTTATATGCTGTGGAATATGCCATACTGATAT 416
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 CACCGGAGCTGATGATGTGTATATAAAGGTTATATGCTGTGGAATATGCCATACTGATAT 388
Query 417 TCACCAAATTAAAAATGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACGAGGT 476
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 CCACCAGATTAAAAATGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACGAGGT 448
Query 477 AGTAGGTGAGGTGTTGGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATGTAGT 536
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 GGTAGGTGAGGTGGTGGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATGTAGT 508
Query 537 CGGAGTCGGCGTGGTCGTTGGATGCTGCGGTAGCTGCAAACCATGCAGCTCAGAACTTGA 596
||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||
Sbjct 509 CGGAGTCGGCGTGATTGTCGGATGCTGCGGAAGCTGCAAACCATGCAGCTCAGAACTTGA 568
Query 597 GCAGTATTGTAACAAGAGAATCTGGAGTTACAACGATGTCTACACCGATGGAAAACCTAC 656
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 569 GCAGTACTGTAACAAGAGAATCTGGAGTTACAATGATGTCTACACCGATGGAAAACCCAC 628
Query 657 TCAAGGTGGCTTCGCCGACACCATGATCGTCAATCAAAAGTTTGTGGTGAAGATTCCAGA 716
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 ACAAGGTGGATTCGCCGACACCATGATCGTCAATCAAAAGTTTGTGGTGAAGATTCCAGA 688
Query 717 AGGAATGGCGGTGGAGCAGGCTGCACCGCTACTCTGCGCGGGAGTAACGGTTTATAGTCC 776
|||||||||||||||||||||||||||||| || ||||| |||||||| ||||| |||||
Sbjct 689 AGGAATGGCGGTGGAGCAGGCTGCACCGCTGCTATGCGCCGGAGTAACCGTTTACAGTCC 748
Query 777 GTTGAGCCACTTCGGTCTAATGGCGAGTGGGCTTAAAGGAGGGATTCTAGGGTTAGGTGG 836
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 749 GTTGAGCCATTTCGGTCTAATGGCAAGTGGGCTCAAAGGAGGGATTCTAGGGTTAGGTGG 808
Query 837 AGTAGGGCACATGGGTGTGAAGATAGCTAAAGCAATGGGACACCATGTGACTGTGATAAG 896
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 809 AGTAGGACACATGGGTGTGAAGATAGCTAAAGCAATGGGACATCATGTGACTGTGATAAG 868
Query 897 CTCATCAGATAAGAAAAAAGAAGAAGCTATCGAACATTTAGGAGCTGACGACTATGTGGT 956
||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 869 CTCATCAGATAAGAAAAAAGAAGAAGCAATGGAACATTTAGGAGCTGATGACTATGTGGT 928
Query 957 GAGCTCTGATCCAGCAGAGATGCAAAGACTCGCAGATTCCCTTGACTACATCATTGACAC 1016
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 929 GAGCTCTGATCCAGCAGAGATGCAAAGACTCGCAGATTCTCTTGACTACATCATCGACAC 988
Query 1017 CGTACCGGTGTTTCACCCTCTCGACCCTTACTTGGCTTGTCTTAAACTCGACGGGAAATT 1076
|||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 989 CGTACCTGTGTTTCACCCTCTCGAGCCTTACTTAGCTTGTCTTAAACTCGATGGGAAATT 1048
Query 1077 GATTCTCATGGGTGTTATCAACACTCCTCTTCAGTTCGTGACCCCTCTCGTCATTCTTGG 1136
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1049 GATTCTCATGGGTGTTATCAACACTCCTCTTCAGTTCTTGACTCCTCTCGTCATTCTTGG 1108
Query 1137 GAGGAAAGTGATATCAGGGAGCTTTATAGGGAGCATTAAAGAGACAGAAGAAGTGTTGGC 1196
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1109 GAGGAAAGTGATATCGGGGAGCTTCATAGGGAGCATTAAAGAGACAGAAGAAGTGTTGGC 1168
Query 1197 TTTCTGCAAAGAGAAAGGGCTTACGTCGACGATTGAAACTGTGAAGATCGATGAGCTTAA 1256
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1169 TTTCTGCAAAGAGAAAGGGCTTACGTCGACCATTGAAACTGTGAAGATTGATGAACTTAA 1228
Query 1257 CATTGCGTTTGAGAGGCTTCGCAAGAACGATGTTCGTTACAGATTTGTGGTTGATGTTGC 1316
|| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1229 CACTGCGTTTGAGAGGCTTAGCAAGAACGATGTTCGTTACAGATTTGTCGTTGATGTTGC 1288
Query 1317 AGGAAGTAATCTGGTGGAGGAGGCTGCAACAACTACAAACTAAAGAGGGCAGGGCACATT 1376
|||||||| || ||||||||||||||||||||||||| |||||||||||| | |
Sbjct 1289 TGGAAGTAACCTCGTGGAGGAGGCTGCAACAACTACAAGCTAAAGAGGGCA----A-A-- 1341
Query 1377 GATACATGAACGAAAAATTGTAACGGGCTTGTTTG-TCCAACGAATGTTTTGTTGTTGTC 1435
||| | | ||||||||| || | | |||||||||||||||||||| |||
Sbjct 1342 -ATA--T----------T-GTAACGGGCCTGGTAGGTCCAACGAATGTTTTGTTGT-GTC 1386
Query 1436 TTTTT--CAAATGGTTCAAACACGAATGCTTTGGCTTT 1471
||||| ||||||||||||| ||||||||||||| |||
Sbjct 1387 TTTTTTTCAAATGGTTCAAAAACGAATGCTTTGGTTTT 1424
> Ahg944486 jgi|Araly1|944486|scaffold_700715.1
Length=1114
Score = 662 bits (358), Expect = 0.0
Identities = 841/1065 (79%), Gaps = 70/1065 (7%)
Strand=Plus/Plus
Query 297 AGGATGGGCTGCAAGAGATCCTTCTGGTG-TTCTCTCTCCTTACTCCTACACT-TTAAG- 353
||| ||||||||||||||||| ||||| | ||||||||||||| | |||||| || ||
Sbjct 53 AGGCTGGGCTGCAAGAGATCCATCTGG-GACTCTCTCTCCTTACACTTACACTCTT-AGA 110
Query 354 GAGCACAGGAGCAGATGATGTGTATATAAAG-GTTATATGCTGTGGAATATGCCATACTG 412
||| || ||| |||| |||||| | || ||| | || ||||||||||| ||||| ||||
Sbjct 111 GAG-ACTGGACCAGAGGATGTGAACAT-AAGAATCATTTGCTGTGGAATCTGCCACACTG 168
Query 413 ATATTCACCAAATTAAAAATGATCTTGGAATGTCTAATTATCCTATGGTTCCTGGGCACG 472
|| |||| |||| |||||||||||||| |||||||| || || |||||||| ||||| |
Sbjct 169 ATCTTCATCAAACCAAAAATGATCTTGGCATGTCTAACTACCCCATGGTTCCAGGGCATG 228
Query 473 AGGTAGTAGGTGAGGTGTTGGAAGTGGGATCAGATGTGAGCAAGTTCACCGTAGGAGATG 532
| || |||||||| ||| |||| || ||||||||||||||||||||||| ||||| ||
Sbjct 229 AAGTGGTAGGTGAAGTGGTGGAGGTTGGATCAGATGTGAGCAAGTTCACTGTAGGTGACA 288
Query 533 TAGTCGGAGTCGGCGTG-GTCGTTGGATGCTGCGGTA-GCTGCAAACCATGC-AGCTCAG 589
|||| ||||| || || |||||||||| ||||| | | || | || ||| || ||
Sbjct 289 TAGTTGGAGTTGG-TTGCCTCGTTGGATGTTGCGG-AGGTTGTAGCCCTTGCGAG-AGAG 345
Query 590 AACTTGAGCAGTATTGTAAC-AAG-AGAATCTGGAGTTACAACGATGTCTACACCGATGG 647
| || || ||||||||| | ||| || || ||||| ||||||||||| |||| ||||||
Sbjct 346 ATCTGGAACAGTATTGT-CCAAAGAAG-ATTTGGAGCTACAACGATGTTTACATCGATGG 403
Query 648 AAAACCTACTCAAGGTGGCTTCGCCGACA-CCA-TGATCG-TCAATCAAAAGTTTGTGGT 704
||||||| ||||| || |||| | | | ||| | ||| || | ||||||||||||||
Sbjct 404 TCAACCTACACAAGGCGGGTTCG-CTAAAGCCACCG-TCGTTC-ACCAAAAGTTTGTGGT 460
Query 705 GAAGATTCCAGAAGGAATGGCGGTGGAGCAGGCTGCACCGCTACTCTGCGCGGGAGTAAC 764
|||||||||||||||||||||||| ||||||||||| || ||||| ||||| || || ||
Sbjct 461 GAAGATTCCAGAAGGAATGGCGGTTGAGCAGGCTGCGCCACTACTGTGCGCTGGTGTGAC 520
Query 765 GGTTTATAGTCCGTTGAGCCACTTCGGTCT-AATGGCGAGTGGGCTTAA-AGGAGGGATT 822
||| |||||||| |||||||||||||||| || | | ||| ||| |||||| ||
Sbjct 521 GGTGTATAGTCCACTGAGCCACTTCGGTCTGAAA--CAACCAGGCCTAAGAGGAGGCATA 578
Query 823 CTAGGGTTAGGTGGAGTAGGGCACATGGGTGTGAAGATAGCTAAAGCAATGGGACACCAT 882
||||||||||||||||| || |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 579 CTAGGGTTAGGTGGAGTTGGTCACATGGGTGTGAAAATAGCCAAAGCAATGGGTCACCAT 638
Query 883 GTGACTGTGATAAGCTCATCAGATAAGAAAAAAGAAGAAGCTAT-CGA-ACATTTAGGAG 940
|||||||| || ||||||||| | ||||| | |||||| ||| | | | || || ||||
Sbjct 639 GTGACTGTCATTAGCTCATCAAACAAGAAGAGAGAAGAGGCTCTGCAAGACCTT--GGAG 696
Query 941 CTGACGACTATGTGGT-GAGCTCTGATCCA-GCAGAGATGCAAAGACTCG-CAGATTCCC 997
|||| || || ||| | | | ||||| ||| ||| ||||| | || | | | |||||
Sbjct 697 CTGATGATTACGTGATCG-GATCTGA-CCAAGCAAAGATG-AGCGAATTGGCTGATTCG- 752
Query 998 TTG-ACTACATCATTGACACCGTACCGGTGTT--TCACCCTCTCGACCCTTACTTGGCT- 1053
||| | ||| | |||||||| || || |||| |||| | || || ||||| ||| ||
Sbjct 753 TTGGATTACGTAATTGACACGGTTCC--TGTTCATCACGCACTTGAGCCTTATTTGTCTC 810
Query 1054 TGTCTTAAACTCGACGGGAAA-TTGATTCTCATGGGTGTTATCAACACTCCTCTT-CAGT 1111
|| ||||| || || ||||| || ||||||||||| |||||||||| ||| ||| ||||
Sbjct 811 TG-CTTAAGCTTGATGGGAAGCTT-ATTCTCATGGGAGTTATCAACAATCC-CTTGCAGT 867
Query 1112 T-CGTGACCCCTCT-CGTCATTCTTGGGAGGAAAGTGATATCAGGGAGCTTTATAGGGAG 1169
| | | || ||||| | | || |||||||||||||||||| | |||||||| ||||||||
Sbjct 868 TTCTT-ACTCCTCTGCTT-ATGCTTGGGAGGAAAGTGATAACGGGGAGCTTCATAGGGAG 925
Query 1170 CATTAAAGAGACAGAAGA-AGTG-TTG-GCTTTCTGCAAAGAGAAAGGGCTT-ACGT-CG 1224
||| || |||||||| || | || ||| | || ||| ||||| |||||| || | || ||
Sbjct 926 CATGAAGGAGACAGAGGAGA-TGCTTGAG-TT-CTGTAAAGA-AAAGGGATTGA-GTTCG 980
Query 1225 A-CGATTGAAACTGTGAAGATCGATGA-GCTTAACATTGCGTTTGAGAGGCTTCGC-AAG 1281
| | || ||| ||||||||| ||| | | |||||| |||||||||||| || || |||
Sbjct 981 ATC-ATCGAAGTTGTGAAGATGGATTATG-TTAACACTGCGTTTGAGAGACT-CGAGAAG 1037
Query 1282 AACGATGTTCGTTACAGATTTGTGGTTGATGTTGCAGGAAGTAAT 1326
|||||||| ||||| || || || |||||||| | |||||| |||
Sbjct 1038 AACGATGTGCGTTATAGGTTCGTCGTTGATGTCGAAGGAAGCAAT 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58735157790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5