BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G19460.2

Length=1517
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg904926 jgi|Araly1|904926|Al_scaffold_0003_2054                    531    7e-150


> Ahg904926 jgi|Araly1|904926|Al_scaffold_0003_2054
Length=606

 Score =  531 bits (287),  Expect = 7e-150
 Identities = 318/333 (95%), Gaps = 1/333 (0%)
 Strand=Plus/Plus

Query  559  GTTGCTGATTTGCTGCTATGGAGAAACCGGACTGGTGCAGTCATTTTGCTAATCTCTTCT  618
            |||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||
Sbjct  67   GTTGCTGATTTGCTGCTATGGAGAAACCGGACCGGTGCAACCATTTTGCTAATCTCTTCT  126

Query  619  ACTGGGTTTTGGTTCTTATTCGAGAGAGCTGGATACAATCTCTTGTCTTTCGTCTCCAAT  678
            |||||||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||
Sbjct  127  ACTGGGTTTTGGTTCTTATTTGAGATAGCTGGGTACAATCTTTTGTCTTTCGTCTCCAAT  186

Query  679  GTTCTGCTTCTTCTCGTTGCGATCTTCTTCTTATGGGCCAAGTCTGCTACAGTTCTCAAC  738
            ||||| |||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct  187  GTTCTTCTTCTTCTCGTTGCCATCCTCTTCTTATGGGCCAAGTCTGCTACAGTACTCAAC  246

Query  739  CGACCGCTACCTCCAGTTCCGAATATGGAAATCCCTGAGGAGTTTGCAAATAAGGCTGCT  798
            ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  247  CGACCGCTACCTCCAGTTCCGAATATGGAAATCCCTGAGGAGTTTGCGATTAAGGCTGCT  306

Query  799  GATGATCTTCGGGTTTGGATCAATTATGTACTGTCAATTGCAAGTGATATCACCATAGCT  858
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  307  GATGATCTTCGGGTTTGGATCAATCATGTACTGTCAATTGCAAGTGATATCACCATAGCT  366

Query  859  AGAAATCCGATTCGTCTCCTTCAGGTTT-TCTT  890
            |||||||||||||||||||||||||||| ||||
Sbjct  367  AGAAATCCGATTCGTCTCCTTCAGGTTTCTCTT  399


 Score =  361 bits (195),  Expect = 1e-98
 Identities = 212/220 (96%), Gaps = 2/220 (1%)
 Strand=Plus/Plus

Query  982   CAGGTTTCTCTTGTCTTGTGGGCTATATCCTATGTTGGGACTTTAATCAACTCCCTCACT  1041
             ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct  388   CAGGTTTCTCTTGTCTTGTGGGCTATATCCTTTGTTGGGACTTTAATCAACTCCTTCACT  447

Query  1042  CTTGTTTACATTGGAGTTCTTCTCAGTCTTTCTTTTCCTATTGTGTATGAGAAGTACCAA  1101
             ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct  448   CTTGTTTACATTGGAGTTCTTCTCAGTCTTTCTTTTCCTCTCGTGTATGAGAAGTACCAA  507

Query  1102  GACCACATTGATGAGAAAGTGAACTCGACTTCTAAATTCGTTCGAAATATCTCAAGGAAG  1161
             |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  508   GACCACATTGATGAGAAAGTGAACTCGACTTCTAAATTCGTTCGAAGTATCTCAAGGAAG  567

Query  1162  TTTCC-ATTGCCCATAAACAAAGAGAAGAAACATCAGTAG  1200
             ||||| || ||| |||||||||||||||||||||||||||
Sbjct  568   TTTCCGAT-GCCTATAAACAAAGAGAAGAAACATCAGTAG  606


 Score = 99.0 bits (53),  Expect = 9e-20
 Identities = 63/67 (94%), Gaps = 3/67 (4%)
 Strand=Plus/Plus

Query  231  ATGGGAGATTCCG--T-TTCTTCTTCATCCCGCGTTTCTGTTCATCAATCTCTTGGTGCT  287
            |||||||||||||  | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGAGATTCCGTTTCTTCTTCTTCAACCCGCGTTTCTGTTCATCAATCTCTTGGTGCT  60

Query  288  GGTTCTG  294
            |||||||
Sbjct  61   GGTTCTG  67



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56792555295


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5