BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19470.1
Length=1388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 1273 0.0
Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461 536 1e-151
Ahg930557 jgi|Araly1|930557|scaffold_303014.1 267 2e-70
Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001 263 3e-69
Ahg930559 jgi|Araly1|930559|scaffold_303016.1 252 6e-66
Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945 132 8e-30
Ahg904694 jgi|Araly1|904694|Al_scaffold_0003_1822 91.6 1e-17
Ahg318453 jgi|Araly1|318453|fgenesh1_pm.C_scaffold_3001469 75.0 1e-12
> Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1
Length=1263
Score = 1273 bits (689), Expect = 0.0
Identities = 874/961 (91%), Gaps = 21/961 (2%)
Strand=Plus/Plus
Query 406 atcatcatGTATAAAACGTGAAGCTAAACTTATTAGCTTAGGCGATGAAGAAGC-TGATA 464
|||||||||||||||||| ||||||||||||||| ||||||||||||| ||| | |||||
Sbjct 313 ATCATCATGTATAAAACGCGAAGCTAAACTTATTGGCTTAGGCGATGATGAA-CTTGATA 371
Query 465 TATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCAGCATCACCGAATCCAAGA 524
||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct 372 TATCTCAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCAGCATCACCAAAGACAAGA 431
Query 525 CTAGGCTCGTTGTTTGGAACCCGTATTGGGGGCATACCCGGT-TATTCGAGCCCACACAT 583
|||||||||| ||||||||||| |||||||||||||||| || | ||||||||||||||
Sbjct 432 CTAGGCTCGTGGTTTGGAACCCCTATTGGGGGCATACCC-GTCCAATCGAGCCCACACAT 490
Query 584 CAATTCAACAAATTCGATAGCTATTCGTATGCTCTCGGATACGACAAGAGCCGCAAATCC 643
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 491 CAATTCAACAAACTCGATAGCTATTCGTATGCTCTCGGATACGACAAGAGCAGCAAATCC 550
Query 644 CACAAAATCTTGAGGGGTATTACTTGTTTGGATCCCTTCAAAATCTACGATTTTAACTCT 703
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 551 CACAAAATCTTGAGGGGTATTACTTGTTTGAAGCCCTTCAAAATCTACGATTTTAACTCT 610
Query 704 GACTT-ATGGAGGGATCTTGATGTAACTCCGGAGTGGCACTTATGGCA-AATGCTCCATG 761
|| || |||||||| ||||||||| ||||| || ||||||||| || | || | |||||
Sbjct 611 GA-TTCATGGAGGGTTCTTGATGTCACTCCAGACTGGCACTTAAGG-ACTATTCACCATG 668
Query 762 GCGTGTCTCTCAAGGGAAATGCCTACTGGTTTGCTAG-AGAGAATTATACCGAAACAATG 820
|||||||||||||||||||||| |||||||||||| | |||||| ||| ||||||| | |
Sbjct 669 GCGTGTCTCTCAAGGGAAATGCGTACTGGTTTGCT-GAAGAGAAGTATTCCGAAACCA-G 726
Query 821 -GACACAGACCATTTTTTCTTACTCTGTTTTGATTTCACAAGCGAGACATTTGGGCCGCC 879
|| | |||| ||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 727 AGAAATAGACGATTTTTTCTTAGTCTGTTTTGATTTCACAAGAGAGACATTTGGGCCGCC 786
Query 880 TTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGAAGATACTATGAGTGTATCTAGTGTTAG 939
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 787 TTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGAAGATGCTATGAGTGTATCTAGTGTTAG 846
Query 940 AGAAGAGCAGCTTGTTGTATTATATCAGCCGTGGGATT-ATTTACAGTTGGACATCTGGG 998
|||||||||||||| ||| |||||||||||||||||| ||| | || |||| |||||||
Sbjct 847 AGAAGAGCAGCTTGCTGTTTTATATCAGCCGTGGGATACATTAA-AGATGGAGATCTGGG 905
Query 999 TGACGTCTAAGATTGAGCCCAACGCTGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGA 1058
| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 906 TTACGTCTAAGATTGAGCCCAACGCGGTCTCCTGGAACAGCAAGGTGTTCTTATCAGTGA 965
Query 1059 GTTTAAAACAACTCGTCAGCCCTCAGTTTCAGTTA-ACTTTTGGGAGTTTCTTCATCGAC 1117
|||||||||||||| | ||||||||||||| || | ||| |||||||||||||| |||
Sbjct 966 GTTTAAAACAACTCATTGGCCCTCAGTTTCATTTTTA-TTTGGGGAGTTTCTTCATTGAC 1024
Query 1118 GAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGACTACGATA-ATAAGCGCAACATAGC 1176
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| ||
Sbjct 1025 GAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGACTACAA-AGATAAGCGCAACATGGC 1083
Query 1177 TTACATCTTTGGAGTGGATGGATCCTTTAAAGCAGTTGATCTCGGAGATTCAGACCGAAA 1236
||||||| |||||||||||||||||||||||| ||| ||||| ||||| |||||| | ||
Sbjct 1084 TTACATCATTGGAGTGGATGGATCCTTTAAAGAAGTGGATCTTGGAGAATCAGAC-GTAA 1142
Query 1237 G-TGTTTTCCACTTGTGTGCTCTTATGTTCCAAGTCTAGTGCAACTTAATTAGTCGACCA 1295
| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1143 GGTGTTACCCACTCGTGTGCTCTTATGTTCCAAGTCTAGTGAAACTTAATTAGTCGACCA 1202
Query 1296 TCTATTCCTTGCTTACttttttt-CTTCCTCTTTTGTCATCTTCTTTGAACAAGATCATT 1354
|||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1203 TCTATTTCTTGCTTGTTTTTTTTTCTTTCTCTTTTGTCATCTTCTTTGAACAAGATCATT 1262
Query 1355 A 1355
|
Sbjct 1263 A 1263
Score = 475 bits (257), Expect = 3e-133
Identities = 290/305 (95%), Gaps = 6/305 (2%)
Strand=Plus/Plus
Query 82 TATATATCGAGAGGCCGAAGAAATCTGTAATCACAGACAGAGGAAAAATAAGAATAAGAT 141
||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||
Sbjct 22 TATATATCGAGAGGCCGAAGAAATCGGTAATCACAGAGAGAGGAAAAATAAGAAGAAGAT 81
Query 142 GTACAATCTTCCAAGAGATTTGCCGGAGGAGGTGCTCTGTAGAATTCCGTTGACATCTCT 201
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 82 GTCCAATCTTCCAAGAGATTTGTCGGAGGAGGTGCTCTGTAGAATTCCGTTGACATCTCT 141
Query 202 GAGGCCTGTCCGATCTACTTGCAAAAAGTGGAGCACTTTATCCAAATGTGGGAGCTTTGC 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 GAGGCCTGTCCGATCTACTTGCAAAAAGTGGAGCACTTTATCCAAATGTGGGAGCTTTGC 201
Query 262 AAAGAAGCACCTTGCTCAAGCAAAAGTACTAGCAGACGCAAAGGAGTTTATGGTGGTCTT 321
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |
Sbjct 202 AAAGAAGCACCTTGCTCAAGCAAAAGTA---GCAGAAGCAAAGGAGTTCATGGTGGTCAT 258
Query 322 GATGATGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTCAAAACAACGTTGTTGAatc 381
||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 259 GATGAAGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTCAAAACA-CG--GTTGAATC 315
Query 382 atcat 386
|||||
Sbjct 316 ATCAT 320
> Ahg342698 jgi|Araly1|342698|fgenesh1_pg.C_scaffold_3002461
Length=1110
Score = 536 bits (290), Expect = 1e-151
Identities = 470/551 (85%), Gaps = 35/551 (6%)
Strand=Plus/Plus
Query 406 atcatcatGTATAAAACGTGAAGCTAAACTTATTAGCTTAGGCGATGAAGAAGCTGATAT 465
||||||||||||||| ||||||||| |||||||||||||| | | ||| |||| ||||||
Sbjct 249 ATCATCATGTATAAAGCGTGAAGCTGAACTTATTAGCTTA-G-G-TGATGAAGTTGATAT 305
Query 466 ATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCAGCATCACCGAATCCAAGAC 525
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 306 ATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCAGCATCACCAAAGACAAGAC 365
Query 526 TAGGCTCGTTGTTTGGAACCCGTATTGGGGGCATACCCGGTT-ATTCGAGCCCACACATC 584
||||||||| |||||||||||||||||||| ||||||||| || ||| | |||||||
Sbjct 366 TAGGCTCGTGGTTTGGAACCCGTATTGGGGACATACCCGGACGAT-CGAACTCACACAT- 423
Query 585 AA-TT-CA-ACAAATTCGATAGCTAT-TCGTATGCTCTCGGATACGACAAGAGCCGCAAA 640
|| || || | || | |||||| ||| | |||||||||||||||| |||||||| |||||
Sbjct 424 AACTTACAGATAA-T-CGATAGATATAT-GTATGCTCTCGGATACAACAAGAGCAGCAAA 480
Query 641 TCCCACAAAATCTTGAGGGGT-ATTACTTGTTTGGATCCC--TT----------CAAAAT 687
|||||||||||||||||| | ||||||| | ||||||| || ||||||
Sbjct 481 TCCCACAAAATCTTGAGGT-TCATTACTTACTGGGATCCCAATTTTGAAGAGTTCAAAAT 539
Query 688 CTACGATTTTAACTCTGACTT-ATGGAGGGATCTTGATGTAACTCCGGAGTGGCACT-TA 745
||||||||| |||||| | || |||||||| ||||||||| ||||| || ||| || ||
Sbjct 540 CTACGATTTGAACTCTAA-TTCATGGAGGGTTCTTGATGTCACTCCAGACTGG-ACGATA 597
Query 746 TGGCAAATGCTCCATGGCGTGTCTCTCAAGGGAAATGCCTACTGGTTTGCTAGA-GAGAA 804
| || || ||||||||||||||||||||||||||| ||||||||||||| | |||||
Sbjct 598 AGTCATATTAACCATGGCGTGTCTCTCAAGGGAAATGCGTACTGGTTTGCTA-ATGAGAA 656
Query 805 TTATACCGAAACAATGGACA-CAGACCATTTTTTCTTACTCTGTTTTGATTTCACAAGCG 863
||| | ||||||| | | | | ||||||||||||||| ||||||||||||||||||| |
Sbjct 657 GTATTCTGAAACAA-GAAGAACCGACCATTTTTTCTTAGTCTGTTTTGATTTCACAAGAG 715
Query 864 AGACATTTGGGCCGCCTTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGAAGATACTATGA 923
|||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 716 AGACATTTGGACCGCTTTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGAAGATGCTATGA 775
Query 924 GTGTATCTAGT 934
|||||||||||
Sbjct 776 GTGTATCTAGT 786
Score = 370 bits (200), Expect = 2e-101
Identities = 293/336 (87%), Gaps = 13/336 (4%)
Strand=Plus/Plus
Query 962 TATC-AG-CCGTGGGATTA-TTTACAGTTGGACATCTGGGTGACGTCTAAGATTGAGCCC 1018
|||| || |||||||| || ||| || |||| |||||| | ||||||||||||||||||
Sbjct 779 TATCTAGTCCGTGGGA-TACATTAAAGATGGAGATCTGGATTACGTCTAAGATTGAGCCC 837
Query 1019 AACGCT-GTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTTTAAAACAACTCGTCAG 1077
|||| | |||||||||||||||||||||||||||||||||||| ||||| ||||| | |
Sbjct 838 AACG-TGGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTATAAAAAAACTCATT-G 895
Query 1078 CCC-TCAGTTTCAGTTA-ACTTTTGGGAGTTTCTTCATCGACGAGGAGAAGAAAGTCGCT 1135
||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 896 CCCCTCAGTTTCAGTTTTACTTG-GGGAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCT 954
Query 1136 GTGGTTTTTGATAAAGACTACGATAATAAGCGCAACATAGCTTACATCTTTGGAGTGGAT 1195
||||||||||||||| ||||| | || ||||| ||||||||||||| |||||||||||
Sbjct 955 GTGGTTTTTGATAAATACTACAACGATCGGCGCAGCATAGCTTACATCATTGGAGTGGAT 1014
Query 1196 GGATCCTTTAAAGCAGTTGATCTCGGAGATTCAG-AC-CGAAA-GTGTTTTCCACTTGTG 1252
|||||||| |||||||| ||||||||||| || | | || || ||||| |||||||||
Sbjct 1015 GGATCCTTCAAAGCAGTGGATCTCGGAGAATCGGCATACGCAATGTGTTACCCACTTGTG 1074
Query 1253 TGCTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG 1288
|||||||||||||||||| |||||||||||||||||
Sbjct 1075 TGCTCTTATGTTCCAAGTATAGTGCAACTTAATTAG 1110
Score = 285 bits (154), Expect = 6e-76
Identities = 224/256 (88%), Gaps = 12/256 (5%)
Strand=Plus/Plus
Query 137 AAGATGTACAATCTTCCAAGAGATTTGCCGGAGGAGGTGCTCTGT-AGAATTCCGTTGAC 195
||||| | ||||||||| ||||||||| ||||||||||||||||| || |||||||||||
Sbjct 7 AAGATATCCAATCTTCCTAGAGATTTGGCGGAGGAGGTGCTCTGTAAG-ATTCCGTTGAC 65
Query 196 ATCTCTGAGGCCTGTCCGATCTACTTGCAAAAAGTGGAGCACTTTATCCAAATGTGGGAG 255
||||||| | || ||||||| |||||||||||||||| |||||||||||||| || |||
Sbjct 66 ATCTCTGCGAACTATCCGATCCACTTGCAAAAAGTGGAACACTTTATCCAAATATGAGAG 125
Query 256 CTTTGCAAAGAAGCACC-T--TGCTCAAGCAAAAGTA-CTAGCAGACGCAAAG-GAGTTT 310
|||||||||||| ||| | || ||||||||||||| | || | | | |||| ||||||
Sbjct 126 TTTTGCAAAGAAGTACCTTGGTGATCAAGCAAAAGTAGC-AG-AAAGGGAAAGAGAGTTT 183
Query 311 ATGGTGGTCTTGATGATGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTCAAAACAAC 370
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 184 ATGGTGGTCATGATGATGAATTTTAGGGTTTATTTGATGAGAGTTAATCTTCAAAACAA- 242
Query 371 GTTGTTGAatcatcat 386
| |||||||||||||
Sbjct 243 -T-GTTGAATCATCAT 256
> Ahg930557 jgi|Araly1|930557|scaffold_303014.1
Length=643
Score = 267 bits (144), Expect = 2e-70
Identities = 374/481 (78%), Gaps = 32/481 (7%)
Strand=Plus/Plus
Query 835 TTTCTTACTCTGTTTTGATTTCACAAGCGAGACATTTGGGCCGCCTTTGCCTCTTCCGTT 894
||||||| ||||||||||||| |||||||||| |||||| |||| |||| || | ||||
Sbjct 152 TTTCTTAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATTTGTCTATGCCGTA 211
Query 895 TGAGTTTGCTGTTTCTGAAGATACTATGAGTGTATCTAGTGTTAGAGAAGAGCAGCTTGT 954
|||| ||| | ||| ||||| |||| |||| |||||||||| | ||||||||||||||
Sbjct 212 TGAG-TTG-TATTT-TGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGC 268
Query 955 TGTATTATATCAGCCG-TGGGATTA-TTTACAGTTGGACATCTGGGTGACGTCTAAGATT 1012
|| || | ||| || ||||| || ||| || | || || ||| | ||| ||||||||
Sbjct 269 AGTTTTGTTTCA-ACGTTGGGA-TACATTAGAGATAGAAATATGGATTACGACTAAGATT 326
Query 1013 GAGCCCAACGCTGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGT-TTAAAACA--- 1068
||||||||||| ||||| ||||||||||||||||||||| | |||| | | | | ||
Sbjct 327 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCGTGAATATGAGATCATTC 386
Query 1069 ACTCG-TCAG-CCCTCAG-TTTCAGTTAACTTTTGGGAGTTTCTTCATCGACGAGGAGAA 1125
||| | | | | |||| ||| | | || || |||||||||||| ||| |||||||
Sbjct 387 ACTTGCTTTGACTTTCAGATTT-TGCTCACACATGCGAGTTTCTTCATTGACAAGGAGAA 445
Query 1126 GAAAGTCGCTGTGGTTTTTGATAAAGAC----TACG--A--T-AA---TAAGCGCAACAT 1173
||||||||| || || ||||||||| || ||| | | || | |||| | |
Sbjct 446 GAAAGTCGCCGTAGTGTTTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCACCGT 505
Query 1174 AGCTTACATCTTTGGAGTGGATGGATCCTTTAAAGCAGTTGATCTCGGAG-AT-T-CAGA 1230
|||||||||| ||||||||||||||||||| |||| || ||||| |||| || | |||
Sbjct 506 AGCTTACATCGTTGGAGTGGATGGATCCTTGAAAGAAGCCGATCTTGGAGAATATGGAGA 565
Query 1231 CCGAA-AGTGTTTTCCACTTGTGTGCTCTTATGTTCCAAGTCTAGTGCAACTTAATTAGT 1289
| || | |||| |||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 566 -CAAACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAACTTAATTAGT 624
Query 1290 C 1290
|
Sbjct 625 C 625
> Ahg333377 jgi|Araly1|333377|fgenesh1_pm.C_scaffold_672000001
Length=1047
Score = 263 bits (142), Expect = 3e-69
Identities = 371/478 (78%), Gaps = 30/478 (6%)
Strand=Plus/Plus
Query 835 TTTCTTACTCTGTTTTGATTTCACAAGCGAGACATTTGGGCCGCCTTTGCCTCTTCCGTT 894
||||||| ||||||||||||| |||||||||| |||||| |||| |||| || | ||||
Sbjct 576 TTTCTTAATCTGTTTTGATTTTACAAGCGAGAGATTTGGACCGCATTTGTCTATGCCGTA 635
Query 895 TGAGTTTGCTGTTTCTGAAGATACTATGAGTGTATCTAGTGTTAGAGAAGAGCAGCTTGT 954
|||| ||| | ||| ||||| |||| |||| |||||||||| | ||||||||||||||
Sbjct 636 TGAG-TTG-TATTT-TGAAGGTACTGCGAGTCTATCTAGTGTCAAAGAAGAGCAGCTTGC 692
Query 955 TGTATTATATCAGCCG-TGGGATTA-TTTACAGTTGGACATCTGGGTGACGTCTAAGATT 1012
|| || | ||| || ||||| || ||| || | || || ||| | ||| ||||||||
Sbjct 693 AGTTTTGTTTCA-ACGTTGGGA-TACATTAGAGATAGAAATATGGATTACGACTAAGATT 750
Query 1013 GAGCCCAACGCTGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGT-TTAAAACA--- 1068
||||||||||| ||||| ||||||||||||||||||||| | |||| | | | | ||
Sbjct 751 GAGCCCAACGCGGTGTCTTGGAACAGCAAGGTGTTCTTAGCCGTGAATATGAGATCATTC 810
Query 1069 ACTCG-TCAG-CCCTCAGTTTCAGTTAACTTTTGGGAGTTTCTTCATCGACGAGGAGAAG 1126
||| | | | | ||||||| | | || || |||||||||||| ||| ||||||||
Sbjct 811 ACTTGCTTTGACTTTCAGTTTTTGCTCACACATGCGAGTTTCTTCATTGACAAGGAGAAG 870
Query 1127 AAAGTCGCTGTGGTTTTTGATAAAGAC----TACG--A--T-AA---TAAGCGCAACATA 1174
|||||||| || || ||||||||| || ||| | | || | |||| | ||
Sbjct 871 AAAGTCGCCGTAGTGTTTGATAAAAACAAAGAACGCAACGTAAACCCCACTCGCACCGTA 930
Query 1175 GCTTACATCTTTGGAGTGGATGGATCCTTTAAAGCAGTTGATCTCGGAG-AT-T-CAGAC 1231
||||||||| ||||||||||||||||||| ||| || ||||| |||| || | |||
Sbjct 931 GCTTACATCGTTGGAGTGGATGGATCCTTGAAAAAAGCCGATCTTGGAGAATATGGAGA- 989
Query 1232 CGAA-AGTGTTTTCCACTTGTGTGCTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG 1288
| || | |||| |||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 990 CAAACATTGTTATCCACTTGTGTGCTCTTATGTTCCAAGTTTAGTTCAACTTAATTAG 1047
> Ahg930559 jgi|Araly1|930559|scaffold_303016.1
Length=1149
Score = 252 bits (136), Expect = 6e-66
Identities = 209/243 (86%), Gaps = 9/243 (4%)
Strand=Plus/Plus
Query 137 AAGATGTACAATCTTCCAAGAGATTT-GCCGGAGGAGGTGCTCTGTAGAATTCCGTTGAC 195
||||||| ||||||||| || ||||| | | |||||||||||||||||||||||||||||
Sbjct 28 AAGATGTCCAATCTTCCCAGCGATTTGGGC-GAGGAGGTGCTCTGTAGAATTCCGTTGAC 86
Query 196 ATCTCTGAGGCCTGTCCGATCTACTTGCAAAAAGTGGAGCACTTTATCCAAATGTGGGAG 255
||||||||| ||||||||||||||||||||||||| |||||||| |||| ||| |||
Sbjct 87 ATCTCTGAGAAAAGTCCGATCTACTTGCAAAAAGTGGAACACTTTATTCAAAGGTGAGAG 146
Query 256 CTTTGCAAAGAAGCACCTTGCT---CAAGCAAAAGTA-CTAGCAGACGCAAAG-GAGTTT 310
|||||| |||||| |||||| | |||||||||||| | |||| ||| ||| ||||||
Sbjct 147 CTTTGCGAAGAAGTACCTTGGTGATCAAGCAAAAGTAGC-AGCA-ACGGAAAAAGAGTTT 204
Query 311 ATGGTGGTCTTGATGATGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTCAAAACAAC 370
||| ||||| |||||||| |||||||||||||||||||| | ||||||||||| || ||
Sbjct 205 ATGATGGTCATGATGATGGATTTTAGGGTTTATTTGATGCGCGTCAATCTTCACAATGAC 264
Query 371 GTT 373
|||
Sbjct 265 GTT 267
> Ahg342182 jgi|Araly1|342182|fgenesh1_pg.C_scaffold_3001945
Length=981
Score = 132 bits (71), Expect = 8e-30
Identities = 102/116 (88%), Gaps = 5/116 (4%)
Strand=Plus/Plus
Query 252 GGAGCTTTGCAAAGAAGCACCTTGCTCAAGCAAAAGTA-CT--AGCAGACGCAAAGGAGT 308
||||||||||||||||||||||||||||||||| |||| || |||| | | ||||||||
Sbjct 26 GGAGCTTTGCAAAGAAGCACCTTGCTCAAGCAAGAGTAGCTGCAGCAAAGGAAAAGGAGT 85
Query 309 TTATGGTGGTCTTGATGATGAATTTTAGGGTTTATTTGATG-AGAGTCAATCTTCA 363
||||||||||| |||||||| |||||||||||||| ||||| | || ||||||||
Sbjct 86 TTATGGTGGTCATGATGATGGATTTTAGGGTTTATCTGATGCAC-GTGAATCTTCA 140
> Ahg904694 jgi|Araly1|904694|Al_scaffold_0003_1822
Length=1077
Score = 91.6 bits (49), Expect = 1e-17
Identities = 96/118 (81%), Gaps = 5/118 (4%)
Strand=Plus/Plus
Query 1166 CGCAACATAGCTTACATCTTTGGAGTGGATGGATCCTTTAAAGCAGTTGATCTCGGAGAT 1225
||||||| ||| ||||| ||||||||||||||| | |||| || |||||||||||
Sbjct 955 CGCAACACAGCCAACATCGTTGGAGTGGATGGATACGACAAAGAAGCGGATCTCGGAGAA 1014
Query 1226 TCAG-AC-CGAA-AGTGTTTTCCACTTGTGTGCTCTTATGTTCCAAGT-CTAGTGCAA 1279
|| | | | || | ||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 1015 TCTGTCCACAAATATTGTTTTCCACTTGTGTGCTCTTATGTTCCGAGTTC-AGTGCAA 1071
> Ahg318453 jgi|Araly1|318453|fgenesh1_pm.C_scaffold_3001469
Length=987
Score = 75.0 bits (40), Expect = 1e-12
Identities = 46/49 (94%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1105 TTTCTTCATCGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGAC 1153
||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 840 TTTCTTCGTTGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAGGAC 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51878913690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5