BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19480.1
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479462 jgi|Araly1|479462|fgenesh2_kg.3__2163__AT3G19480.1 3101 0.0
Ahg906268 jgi|Araly1|906268|Al_scaffold_0003_3396 1033 0.0
Ahg491252 jgi|Araly1|491252|fgenesh2_kg.7__685__AT4G34200.1 848 0.0
> Ahg479462 jgi|Araly1|479462|fgenesh2_kg.3__2163__AT3G19480.1
Length=1942
Score = 3101 bits (1679), Expect = 0.0
Identities = 1864/1953 (95%), Gaps = 13/1953 (1%)
Strand=Plus/Plus
Query 1 CTCTACTCTGTTGCTGACGATACATACACCTTTACTTACATTATATTCCCGCCATCGCGA 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 1 CTCTACTCTGTTGCTGACGATACATACACCTTTACTTACACTATATTCCCGCCACCACGA 60
Query 61 TGGCGACGTCTCTGAATCTATCATCGATCTTCTCCTCCTCCTCAAGGCTCGTCACCACTC 120
|||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||
Sbjct 61 TGGCGACGTCTCTGAATCTATCATCGGTC-T-T-CTCCTCCTCAAGGCTCGTCACCACTC 117
Query 121 CCTCCTCTGTTTTTCCCATCCGTCAGAGGCGACGGATCATCCTCGTTACGTCTTCTTCTT 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 118 CCTCCTCTGTTTTTCCCATCCGTCAGAGACGACGGATCATCCTCGTTACGTCTTCTTCTT 177
Query 181 CCGGAGGTGGAGGAAAACCGACGATTCTCGTAACGGAGAAGCTAGGCCAAGCGGGGATCG 240
|| |||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 178 CC------GGAGGAAAACCGACTATTCTCGTGACGGAGAAGCTAGGCCAAGCGGGGATTG 231
Query 241 ATCTGCTTAAGAAGTACGCTAATGTGGATTGCTCTTATGATCTGAGTCTCGAGGAGCTTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATCTGCTTAAGAAGTACGCTAATGTGGATTGCTCTTATGATCTGAGTCTCGAGGAGCTTT 291
Query 301 GTACGAAGATCTCTCTTTGTGATGCGCTCATCGTCAGGAGTGGTACCAAGGTTGGGAGAG 360
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 292 GCACGAAGATCTCTCTTTGTGATGCGCTCATCGTCAGGAGTGGTACGAAGGTTGGGAGAG 351
Query 361 ATGTGTTTGAATCGTCGCGTGGGAGGCTTAAGGTTGTTGGACGCGCTGGTGTTGGGATTG 420
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 352 ATGTGTTTGAATCATCGCGTGGGAGGCTTAAGGTTGTGGGACGCGCTGGTGTTGGGATTG 411
Query 421 ATAACGTCGATTTGGCGGCGGCGACTGAGTATGGGTGTTTGGTTGTTAATGCTCCGACTG 480
|||| || ||||||||||| || || |||||||| ||||||||||| |||||||||||||
Sbjct 412 ATAATGTTGATTTGGCGGCTGCCACGGAGTATGGTTGTTTGGTTGTCAATGCTCCGACTG 471
Query 481 CGAACACTGTGGCTGCTGCTGAACACGGAATTGCGCTTTTGACCGCCATGGCTAGAAACA 540
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 472 CTAACACGGTGGCTGCTGCTGAGCACGGGATTGCGCTTTTGACCGCCATGGCTAGAAATA 531
Query 541 TTGCTCAAGCTGATGCTTCTATCAAAGCTGGCAAATGGACGAGAAACAAGTATGTAGGTG 600
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 532 TCGCTCAAGCTGATGCTTCTATCAAAGCTGGCAAATGGACGAGAAACAAATATGTAGGTG 591
Query 601 TTTCACTTGTGGGGAAGACTCTTGCTGTTCTTGGTTTTGGTAAAGTTGGATCAGAGGTTG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TTTCACTTGTGGGGAAGACTCTTGCTGTTCTTGGTTTTGGTAAAGTTGGATCAGAGGTTG 651
Query 661 CTAGACGAGCCAGGGGACTTGGTATGCATGTCATTACACATGATCCTTATGCACCAGCGG 720
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 652 CTAGACGAGCCAGGGGACTAGGGATGCATGTCATTACACATGATCCTTATGCACCAGCGG 711
Query 721 ATCGTGCACGAGCTATTGGTGTGGAGCTTGTTAGTTTTGAAGTAGCTATTTCAACTGCTG 780
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 712 ATCGTGCACGAGCCATTGGTGTGGAGCTTGTTAGTTTTGAAGTAGCTATTTCAACTGCAG 771
Query 781 ACTTCATCTCTTTGCATCTGCCTCTTACTGCTGCTACTTCGAAGATGATGAATGATGTGA 840
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 ACTTCATCTCTTTGCATTTGCCTCTTACTGCTGCTACTTCGAAGATGATGAATGATGTGA 831
Query 841 CCTTTGCGATGATGAAGAAAGGAGTCCGTATTGTTAATGTTGCTCGTGGTGGAGTTATTG 900
||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 832 CCTTTTCGATGATGAAGAAAGGAGTGCGTATTGTCAATGTTGCTCGTGGTGGAGTTATTG 891
Query 901 ATGAGGAAGCTCTTTTGAGAGCGCTTGACTCGGGTATTGTTGCTCAGGCAGCTCTTGATG 960
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 892 ATGAGGAAGCTCTTTTGAGAGCGCTTGATTTGGGTATTGTTGCTCAGGCAGCTCTTGATG 951
Query 961 TTTTTACAGTAGAGCCACCTGTTAAAGATAATAAGTTGGTGTTACATGAGAGTGTCACTG 1020
|||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct 952 TTTTCACAGTGGAGCCACCTGTTAAAGACAATAAGTTGGTGCTACATGAGAGTGTTACTG 1011
Query 1021 CCACACCTCATCTTGGTGCTAGTACTATGGAGGCTCAGGAAGGAGTGTCTATCGAAGTCG 1080
|||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1012 CCACGCCTCATCTTGGTGCTAGTACCATGGAGGCTCAGGAAGGAGTGGCTATCGAAGTCG 1071
Query 1081 CAGAAGCTGTTATTGGAGCTTTGAGAGGAGAACTTGCTGCTACCGCGGTCAATGCACCAA 1140
|||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1072 CAGAAGCTGTTATTGGTGCTTTGAGAGGAGAACTTGCTGCTACGGCTGTCAATGCACCGA 1131
Query 1141 TGGTTCCACTAGAGGTATTGAGGGAGCTGAAGCCGTATGTTGTACTTGCTGAGAAGCTTG 1200
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1132 TGGTTCCACTAGAGGTATTGAGGGAGCTGAAACCGTATGTTGTGCTTGCTGAGAAGCTTG 1191
Query 1201 GGAGGCTGGCTGTACAATTGGTAACTGGTGGAAGCGGTGTGAATGCTGTGAAAGTGACTT 1260
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1192 GTAGGCTGGCTGTACAATTGGTTACCGGTGGAAGCGGTGTGAATGCTGTGAAAGTGACTT 1251
Query 1261 ATGCTTCTTCCAGAGCTCCTGATGATCTCGACACTAGACTTCTCCGAGCCATGGTCATAA 1320
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1252 ATGCTTCTTCCAGAGCTCCTGATGATCTCGACACTAGACTTCTCCGTGCCATGGTCATAA 1311
Query 1321 AGGGGA-TCATCGAACCCATTTCCAGCGTATTCATAAATCTGGTTAACTCCGATTATATT 1379
| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1312 A-AGGACTCATCGAACCCATTTCCAGCGTATTCATAAATCTGGTTAACTCTGATTACATT 1370
Query 1380 GCCAAACAACGTGGAGTCAAAATCTCAGAAGAACGTATGGTTCTAGACGGCTCACCTGAG 1439
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1371 GCCAAACAACGTGGAGTCAAAATCTCAGAAGAACGTATGGTTCTAGATGGCTCACCCGAG 1430
Query 1440 AATCCAATTGAATACATAACTGTTCGGATAGCAAACGTGGAATCAAGATTTGCCAGCGCT 1499
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1431 AATCCAATTGAATACATAACTGTTCGGATAGCAAACGTGGAATCAAGATTCGCCAGCGCG 1490
Query 1500 TTATCAGAGTCCGGTGAGATCAAAGTAGAAGGCAGAGTGAAACAAGGGGTTCCAAGTCTT 1559
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1491 TTATCAGAGTCCGGTGAGATCAAAGTAGAAGGAAGGGTGAAACAAGGGGTTCCAAGTCTA 1550
Query 1560 ACCAAAGTCGGATTATTTGGAGTGGATGTGAGTTTAGAAGGGAGTGTGATTCTGTGCAGG 1619
|||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1551 ACCAAAGTGGGCTTATTTGGAGTGGATGTGAGTCTAGAAGGGAGTGTGATTCTGTGCAGG 1610
Query 1620 CAAGTAGATCAGCCTGGGATGATCGGTAAAGTTGCTAGCATCTTAGGAGATGAAAACGTC 1679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 CAAGTAGATCAGCCTGGGATGATCGGTAAAGTTGCTAGCATCTTAGGAGATGAAAACGTG 1670
Query 1680 AACGTGAGCTTCATGAGCGTCGGTCGAATCGCTCCAGGCAAGCAAGCTGTGATGGCAATT 1739
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1671 AACGTGAGCTTCATGAGCGTCGGTCGAATCGCTCCAGGCAAGCAAGCGGTAATGGCAATT 1730
Query 1740 GGAGTAGATGAACAACCAAGCAAAGAAACTTTGAAGAAAATCGGAGACATTCCTGCCATT 1799
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1731 GGAGTAGATGAACAACCAAGCAAAGAAACTTTAAAGAAAATCGGAGACATTCCTGCCATT 1790
Query 1800 GAAGAGTTTGTTTTCCTCAAACTATAGGTTAATACTTTACATGGATGCACATAAGAAAAA 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 GAAGAGTTTGTTTTCCTCAAACTATAGGTTAATACTTTACATGGATGCACATAAGAAAAA 1850
Query 1860 ACTCAGAGATCGATATAATCTTAAATGATGATTTATTCTGTACTAATGATACAA-TCGAG 1918
|||| || || || ||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1851 ACTC-GAAATAGACATAATCTTAAATGATTATTTATTCTGTACTAATGATACAAATCGAG 1909
Query 1919 TGTACATGAAACAAATTACATAGTTGATTTTTT 1951
|||||||||||||||||||| ||||||||||||
Sbjct 1910 TGTACATGAAACAAATTACACAGTTGATTTTTT 1942
> Ahg906268 jgi|Araly1|906268|Al_scaffold_0003_3396
Length=1809
Score = 1033 bits (559), Expect = 0.0
Identities = 1353/1725 (78%), Gaps = 100/1725 (6%)
Strand=Plus/Plus
Query 152 ACGGATCATCCTCGTTACGT-CTTCTTCTTCCGGAGGTGGAGGAAAACCGA-CGATTCTC 209
|||| | |||||||| |||| | || || |||||| |||| ||||| | || |||||
Sbjct 135 ACGGCTTATCCTCGTGACGTGC-ACTGCTACCGGAGACGGAGCTAAACCAACCG-TTCTC 192
Query 210 GTAACGGAGAAGCTAGGCCAAGC-GGGGATCGATCTGCTTAAGAAGTACGCTAATGTGGA 268
||| |||||||||| || |||| || | || | || ||| |||| | ||| || || ||
Sbjct 193 GTAGCGGAGAAGCTCGGAGAAGCTGGAGTTC-AGCTACTTGAGAAATTCGCAAACGTCGA 251
Query 269 TTGCTCTTATGATC-TGAGTCTC-GAGGAGCTTTGTACGAAGATCTCTCTTTGTGATGCG 326
||| |||||| | | ||| || | |||||||| ||||||||||| || |||||||||
Sbjct 252 TTGTTCTTAT-AACTTGACTC-CAGAGGAGCTAAACACGAAGATCTCACTATGTGATGCG 309
Query 327 CTCATCGTCAGGAGTG-GTACCAAGGTTGGGAGAGATGTGTTTGAATCGTCGCGTGGGA- 384
| || || || |||| | || ||||| || | ||||||||||||||||| ||| |||
Sbjct 310 TTGATTGTGAGAAGTGCG-ACGAAGGTAGGTCGTGATGTGTTTGAATCGTCTCGT-GGAC 367
Query 385 GGCTTAAGGTTGTTGGACGCGCTGGTGTTGGGATTGATAACGTCGAT-TTGGCGGCGGCG 443
||||||||||||||||| | ||||||||||||||||||||||| ||| | | || |||
Sbjct 368 GGCTTAAGGTTGTTGGAAGAGCTGGTGTTGGGATTGATAACGTAGATCTAAG-TGCTGCG 426
Query 444 ACTGAGTATGGGTGTTTGGTTGTTAATGCTCCGACTGCGAACACTGTGGCTGCTGCTGAA 503
|| |||| ||| ||||||||||||||||||||||||||||| ||| | || || ||||||
Sbjct 427 ACGGAGTTTGGTTGTTTGGTTGTTAATGCTCCGACTGCGAATACTATCGCCGCCGCTGAA 486
Query 504 CACGGAATTGCGCTTTTGACCGCCATGGCTAGAAACATTGCTCAAGCTGATGCTTCTATC 563
|| || ||||| ||| || | || ||||||||||| || ||||||||||||||||| |
Sbjct 487 CATGGGATTGCACTTATGGCTGCTATGGCTAGAAATGTTTCTCAAGCTGATGCTTCTGTT 546
Query 564 AAAGCTGGCA-AATGGACGAGAAACAAGTATGTAGGTGTTTCACTTGTGGGGAAGACTCT 622
|||||||| | |||||| || || |||||||| ||||| ||||| ||||||||||| |
Sbjct 547 AAAGCTGG-AGAATGGAAAAGGAATAAGTATGTTGGTGTATCACTAGTGGGGAAGACA-T 604
Query 623 T-GCTGTTCTTGGTTTTGGTAAAGTTGGATCAGAGGTTGCTAGACGAGCCAGGGGACTTG 681
| ||||| | || ||||| ||||||||||| || |||||| ||||||| | |||||||
Sbjct 605 TAGCTGTGATGGGATTTGGGAAAGTTGGATCTGAAGTTGCTCGACGAGCTAAAGGACTTG 664
Query 682 GTATGCATGTCATTACACATGATCCTTATGCACCAGCGGATCGTGCACGA-GCTATTGGT 740
|||||| ||| ||| | |||||||||||||| || ||||||||||| | | |||||||||
Sbjct 665 GTATGCGTGTTATTGCTCATGATCCTTATGCGCCTGCGGATCGTGCTC-ATGCTATTGGT 723
Query 741 GTGGAGCTT-GTTAGTTTTGAAGTAGCTATTTCAACTGCTGACTTCATCTCTTTGCATCT 799
||||| || || || ||||| | ||| |||| |||||||| ||||| ||||| ||| |
Sbjct 724 GTGGAT-TTAGTGAGCTTTGATGAAGCGCTTTCGACTGCTGATTTCATTTCTTTACATAT 782
Query 800 GCCTCTTACTGCTGCTACTTCGAAGATGATGAATGATGTGACCTTTGCGATGATGAAGAA 859
||||||||| ||||||||||||||||| | || |||| || ||||||| |||||||||
Sbjct 783 GCCTCTTACACCTGCTACTTCGAAGATGCTTAACGATGAAACGTTTGCGAAGATGAAGAA 842
Query 860 AGGAGTCCGTATTGTTAATGTTGCTCGTGGTGGAGTTATTGATGAGGAAGCTCTT--TTG 917
||| || | |||||||||||||||||||| || ||||||||||| || || || ||
Sbjct 843 AGGGGTGAGGATTGTTAATGTTGCTCGTGGAGGTGTTATTGATGAAGATGCG-TTGGTT- 900
Query 918 AGAGCGCTT-GACTCG-GGTATTGTTGCTCAGGCAGCTCTTGATGTTTTTAC-AGTAGAG 974
||||| || || | | ||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 901 AGAGCT-TTAGA-TGGTGGTATTGTTGCTCAGGCTGCTCTTGATGTTTTTACTAA-AGAG 957
Query 975 CCACCTGTTAAAGATAATAAGTTGGTGTTA-CATGAGAGTGTCACTGCCACACCTCATCT 1033
|| || | ||| |||| |||||||||| | |||||||| || || | |||||||||||
Sbjct 958 CCGCCGGCTAAGGATAGTAAGTTGGTGC-AGCATGAGAGGGTTACAGTTACACCTCATCT 1016
Query 1034 TGGTGCTAGTACTATGGAGGCTCAGGAAGGAGT-GTCTATCGA-AGTCGCAGAAGCTGTT 1091
||| || |||||||||||||||||||||||||| | |||| || | | ||||||||||||
Sbjct 1017 TGGAGCAAGTACTATGGAGGCTCAGGAAGGAGTAG-CTATTGAGATT-GCAGAAGCTGTT 1074
Query 1092 ATTGGAGCT-TTGAGAGGAGAACTTGCTGCTACCGCGGTCAATGCACCAATGGTTCCA-C 1149
|||||||| || | ||||| |||||| |||| || || |||||||| |||||| | |
Sbjct 1075 GTTGGAGCTCTTAAT-GGAGAGCTTGCTTCTACTGCTGTAAATGCACCTATGGTTTCTGC 1133
Query 1150 TAGAGGTAT-T-GAGGGAGCTGAAGCCGTATGTTGTACTTG-CTGAG-AAGCTTGGG-AG 1204
| ||||| | | | || ||||||| || ||||| || ||| | ||| || ||||| ||
Sbjct 1134 T-GAGGT-TCTCGCGG-AGCTGAAACCATATGTGGTG-TTGGCGGAGCAA--TTGGGGAG 1187
Query 1205 GCTGGCTGTACAATTGGTAACTGGTGGAAGCGGTGTGAATG--CTGTGAAAGTGACTTAT 1262
|||||||| |||||||| |||| |||||||||||||| | | ||||||||||| ||
Sbjct 1188 ACTGGCTGTCCAATTGGTGGCTGGAGGAAGCGGTGTGAA-GAAC-GTGAAAGTGACCTAC 1245
Query 1263 GCTTCTTC-CAGAGCTC-CTGATGATCTCGACACTAGACTTCTCCGAGCCATGGTCATAA 1320
||||| | | |||| | |||| ||||| ||||||||||||||| |||||||| | | |
Sbjct 1246 GCTTCGGCTC-GAGC-CACTGACGATCTTGACACTAGACTTCTCAGAGCCATGATTACGA 1303
Query 1321 AGGGGATCATCGAACCCATTTCC-A-GCGTATTCATAAATCTGGTTAACTCCGATTATAT 1378
|||| ||||| || || || ||| | | |||| |||| || || ||| | ||||| |
Sbjct 1304 AGGGTATCATTGAGCCAATCTCCGACGTGTATG--TAAACCTTGTCAACGCGGATTACAC 1361
Query 1379 TGCCAAACA-ACGTGG-AGTCAAAATCTCAGAAGAACGTATGGT-TC-TAGACGGCTCAC 1434
|| ||||| | | || | | | ||||||||| ||||| ||| || | ||||| ||||
Sbjct 1362 AGCAAAACAGA-GAGGTA-TGAGAATCTCAGAGGAACGG--GGTGTCCTTGACGGTTCAC 1417
Query 1435 CTGAGAATCCAATTGAATAC-ATAACTGTTCGGATAG-CAAACGTGGAATC-AAGATTTG 1491
| |||| ||| | || || || || |||| | ||| ||| ||| || || || ||| |
Sbjct 1418 CAGAGAGCCCACTCGAG-ACCATCACGGTTCAGCTAGGCAA-CGTAGAGTCCAA-ATTCG 1474
Query 1492 CCAGCGCTTTATCAGAGTCCGGTGA-GATCAAAGTAGAAGGCAGAGTGAAACAAGGGGTT 1550
||||||| ||||| || || || || | ||||||| ||||| ||||| ||| | ||||||
Sbjct 1475 CCAGCGCCTTATCTGAATCTGGAGAAG-TCAAAGTTGAAGGAAGAGTTAAAGATGGGGTT 1533
Query 1551 CCA-AGTCTT-ACCAAAG-TCGGATTATTTGGA-GTGGATGTGAGT-TTAGAAGGGAGTG 1605
|| | | || || |||| | || || ||| || || ||||||||| || ||||| |||
Sbjct 1534 CCCCA-T-TTGAC-AAAGGTGGG-TTCTTTTGAAGTAGATGTGAGTCTT-GAAGGAAGTA 1588
Query 1606 TGATTCTGTGCAGGCAAGTAGATCAGCCTGGG-ATGATCGGTAAAGTTGCTAGCATCTTA 1664
| || ||||| |||||||||||||| || ||| |||||||| | || | || |||||
Sbjct 1589 TAATACTGTGTAGGCAAGTAGATCAACC-GGGCATGATCGGGACTGTCGGAAGAATCTTG 1647
Query 1665 GGAGA-TGAAAACGTCAACGTGAGCTTCATGAGCGTCGGTCGAATCGCTCC-AGGCAAGC 1722
||||| | ||| || || || || |||||||| || || ||||||| || ||| ||||
Sbjct 1648 GGAGAGTCAAAT-GTTAATGTCAGTTTCATGAGTGTTGGAAGAATCGCGCCGAGG-AAGC 1705
Query 1723 AAGCTGTGATGGCAATTGGAGTAGATGAACAA-CCAAGCAAAGAAACTTTGAAGAAAATC 1781
|||| || ||||||||||| || ||||| || || |||||||| ||| |||||||||||
Sbjct 1706 AAGCAGTTATGGCAATTGGTGTTGATGA-CATGCCGAGCAAAGACACTCTGAAGAAAATC 1764
Query 1782 GGAGACATTCCTGCCATTGAAGAGTTTGTTTTCCTCAAACTATAG 1826
|| || ||||| ||| | || |||||||| |||||||| ||||||
Sbjct 1765 GGTGAAATTCCGGCCGTGGAGGAGTTTGTGTTCCTCAAGCTATAG 1809
> Ahg491252 jgi|Araly1|491252|fgenesh2_kg.7__685__AT4G34200.1
Length=2029
Score = 848 bits (459), Expect = 0.0
Identities = 1206/1560 (77%), Gaps = 78/1560 (5%)
Strand=Plus/Plus
Query 306 AAGATCTCTCTTTGTGATGCGCTCATCGTCAGGAGTGGTACCAAGGTTGGGAGAGATGTG 365
|||||||| || ||||||||| | ||||| |||||||| || |||||||| | || |||
Sbjct 360 AAGATCTCGCTATGTGATGCGTTGATCGTGAGGAGTGGGACTAAGGTTGGCCGTGAGGTG 419
Query 366 TTTGAATCGTCGCGTGGGA-GGCTTAAGGTTGTTGGACGCGCTGGTGTTGGGATTGATAA 424
||||||||||| || ||| |||| ||||||||||||||||||||||||||||| || ||
Sbjct 420 TTTGAATCGTCTCG-CGGACGGCTCAAGGTTGTTGGACGCGCTGGTGTTGGGATCGACAA 478
Query 425 CGTCGATTTG-GCGGCGGCGACTGAGTATGGGTGTTTGGTTGTTAATGCTCCGACTGCGA 483
||| ||| || | | | ||||| |||| ||||||||||||||| || |||||||| ||||
Sbjct 479 CGTGGATCTGAGTG-CAGCGACGGAGTTTGGGTGTTTGGTTGTCAACGCTCCGACGGCGA 537
Query 484 ACACTG-TGGCTGCTGCTGAACACGGAATTGCGCTTTTGACCGCCATGGCTAGAAACATT 542
|||| | | ||||||||||| |||||||| || ||| || | ||||||||||| ||| ||
Sbjct 538 ACAC-GATCGCTGCTGCTGAGCACGGAATCGCTCTTATGGCGGCCATGGCTAGGAACGTT 596
Query 543 GCTCAAGCTGATGCTTCTATCAAAGCTGGCAAA-TGGACGAGAAACAAGTATGTAGGTGT 601
|||||||||||||| ||| | || ||||| | | |||| ||| ||||||||||| |||||
Sbjct 597 GCTCAAGCTGATGCGTCTGTGAAGGCTGG-AGAGTGGAAGAGGAACAAGTATGTGGGTGT 655
Query 602 TTCACTTGTGGGGAAGACTCTTGCTGTTCTTGGTTTT-GGTAAAGTTGG-ATCAGAGGTT 659
|||||||||||| ||||| ||||| || |||| || || |||||||| | | || |||
Sbjct 656 TTCACTTGTGGGCAAGACCCTTGCAGTG-TTGGGATTCGGGAAAGTTGGGA-CGGAAGTT 713
Query 660 GCTAGACGAGCCAGGGGACTTGGTATGCATGTCATTACACATGATCCTTATGCACCAGCG 719
|||||||| |||| ||| |||||||||| ||||||| | |||||||| ||||| |||||
Sbjct 714 GCTAGACGTGCCAAGGGTCTTGGTATGCGTGTCATTGCTCATGATCCCTATGCCCCAGCA 773
Query 720 GATCGTGCACGA-GCTATTGGTGTGGAGCTT-GTTAGTTTTGAAGTAGCTATTTCAACTG 777
|| ||||||| | || |||||||| || ||| || || ||||| | ||| || | || |
Sbjct 774 GACCGTGCAC-ACGCCATTGGTGTTGA-CTTAGTGAGCTTTGATGAAGCCCTTGCGACCG 831
Query 778 CTGACTTCATCTCTTTGCATC-TGCCTCTTACTGCTG-CTACTTCGAAGATGA-TGAATG 834
| || ||||| ||| |||| | |||||||||| || | || |||||||| | | || |
Sbjct 832 CGGATTTCATTTCTCTGCA-CATGCCTCTTAC-GCCAACAACATCGAAGAT-ACTCAACG 888
Query 835 ATGTGACCTTTGCGATGATGAAGAAAGGAGTCCGTATTGTTAATGTTGCTCGTGGTGGAG 894
| | |||||||| | |||||||||||||| || ||||| |||||||||||||| || |
Sbjct 889 ACGAAACCTTTGCCAAAATGAAGAAAGGAGTTCGCATTGTCAATGTTGCTCGTGGAGGTG 948
Query 895 TTATTGATGAGGAAGCTCTTT-TGAGAGCGCTTGACTCGGGTATTGTTGCTCAGGCAGCT 953
| || || || || || || ||||||| || || || || |||||||||||||| ||
Sbjct 949 TCATAGACGAAGATGCG-TTAGTGAGAGCTCTGGATTCTGGCATTGTTGCTCAGGCTGCA 1007
Query 954 CTTGATGTTTTTAC-AGTAGAGCCACCTGTTAAAGATAATAAGTTGGTGTTA-CATGAGA 1011
|||||||| || || | |||||| || | |||||||| ||| | ||| | || ||||
Sbjct 1008 CTTGATGTCTTCACCAA-AGAGCCGCCGGCTAAAGATAGCAAGCTCGTGC-AGCACGAGA 1065
Query 1012 GTGTCACTGCCACACCTCATCTTGGTGCTAGTACTATGGAGGCTCAGGAAGGAGT-GTCT 1070
| ||||||| || ||||||||||| || ||||| |||||||| ||||||||||| | |
Sbjct 1066 GGGTCACTGTGACTCCTCATCTTGGAGCCAGTACCATGGAGGCGCAGGAAGGAGTTGCC- 1124
Query 1071 ATCGAAGTCGCAGAAGCTGTTATTGGAGCTTTGAGA-GGAGAACTTGCTGCTACCGCGGT 1129
|||||| | || ||||||||| |||||||| ||| | ||||| ||||||||||| || ||
Sbjct 1125 ATCGAAATTGCTGAAGCTGTTGTTGGAGCTCTGA-ATGGAGAGCTTGCTGCTACAGCTGT 1183
Query 1130 CAATGCACCAATGGTTCCA-CTAGAGGTAT-TGAGGGAGCTGAAGCCGTATGTTGTACTT 1187
||||||||| |||||| | || ||||| | | | ||| |||| || ||||| |||||
Sbjct 1184 CAATGCACCTATGGTTTCTGCT-GAGGT-TCTAACCGAGTTGAAACCATATGTGGTACTA 1241
Query 1188 GCTGAGAAGCTTGGGAGGCTGGCTGTACAATTGGTAACTGGTGGAAGCGGTGTGAATG-C 1246
|| ||||| || || || ||||| || |||||||| | || |||||||||||||| |
Sbjct 1242 GCCGAGAAACTAGGAAGACTGGCAGTGCAATTGGTGGCCGGAGGAAGCGGTGTGAAAAAC 1301
Query 1247 TGTGAAAGTGACTTATGCTTCTTCCAGAGCTC-CTGATGATCTCGACACTAGACTTCTCC 1305
|||||| | || || || || | ||||| | |||||||||| ||||| |||||||| |
Sbjct 1302 -GTGAAAATCACATACGCCTCAGCAAGAGC-CACTGATGATCTTGACACCAGACTTCTAC 1359
Query 1306 GAGCCATGGTCATAAAGGGGATCATCGAACCCATTTCC-AGCGTAT-TCATAAATCTGGT 1363
|||||||| ||| ||||| || ||||| || || || | ||| | | | ||| ||||
Sbjct 1360 GAGCCATGATCACCAAGGGAATTATCGAGCCAATCTCTGA-CGTCTATG-TCAATTTGGT 1417
Query 1364 TAACTCCGATTAT-ATTGCCAAACA-ACGTGGAGTCAAAATCTCAGAAGAACGTATGGTT 1421
||| | |||| | | ||||| || | | || | | | ||||||| |||||| || |
Sbjct 1418 CAACGCTGATT-TCACAGCCAAGCAGA-GAGGTCTTAGACTCTCAGAGGAACGTGTGCT- 1474
Query 1422 CTAG-ACGGCTCACCTGAGAATCCAATTGAATACA-TAACTGTTCGGATA-GCAAACGTG 1478
|| | | || ||||| |||| || ||| | ||| ||||||||| | || |||| |||
Sbjct 1475 CTTGGATGGTTCACCAGAGAGCCCG-TTGGAGACAATAACTGTTCAGCTAAGCAAT-GTG 1532
Query 1479 GAATC-AAGATTTGCCAGCGCTTTATCAGAGTCCGGTGAGATCAAAGTAGAAGGCAGAGT 1537
|| || || ||| ||||| | || || || || || ||| ||||||| ||||| || ||
Sbjct 1533 GAGTCTAA-ATTCGCCAGTTCGTTGTCTGAATCAGGAGAGGTCAAAGTGGAAGGAAGGGT 1591
Query 1538 GAAACAAGGGGTTCCA-AGTCTT-ACCAAAG-TCGGAT-TATTTGGAG-TGGATGTGAGT 1592
||| | || || ||| | | || || |||| | |||| | |||| || | ||||| | |
Sbjct 1592 TAAAGACGGAGTCCCACA-T-TTGAC-AAAGGTTGGATCT-TTTG-AGGTCGATGTAACT 1646
Query 1593 -TTAGAAGGGAGTGTGATTCTGTGCAGGCAAGTAGATCAGCCTGGGATGATCGGTAAAGT 1651
|| ||||| ||| | || ||||||||||| || ||||| ||||| |||||||| | |||
Sbjct 1647 CTT-GAAGGTAGTATCATACTGTGCAGGCAGGTGGATCAACCTGGTATGATCGGGACAGT 1705
Query 1652 TGCTAGCATC-TTAGGAGA-TGAAAACGTCAACGTGAGCTTCATGAGCGTCGGTCGAATC 1709
| |||||| || ||||| | || || || || | |||||||||||| || | ||
Sbjct 1706 CGGAAGCATCCTT-GGAGAGTCTAAT-GTGAATGTTAACTTCATGAGCGTTGGGAGGATT 1763
Query 1710 GCTCC-AGGCAAGCAAGCTG-TGATGGCAATTGGAGTAGATGAACA-ACCAAGCAAAGAA 1766
|| || ||| |||||||| | | ||||| || ||||||||||| || ||||||||||||
Sbjct 1764 GCACCGAGG-AAGCAAGC-GATTATGGCTATCGGAGTAGATGA-CATACCAAGCAAAGAT 1820
Query 1767 ACTTTGAAGAAAATCGGAGACATTCCTGCCATTGAAGAGTTTGTTTTCCTCAAACTATAG 1826
|| ||||||| || || || ||||| || ||||| ||||| ||||||||||| || |||
Sbjct 1821 ACACTGAAGAAGATTGGGGAAATTCCAGCGATTGAGGAGTTCGTTTTCCTCAAGCTCTAG 1880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73704624075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5