BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19490.1
Length=2125
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929841 jgi|Araly1|929841|scaffold_302298.1 2867 0.0
Ahg337140 jgi|Araly1|337140|fgenesh1_pg.C_scaffold_1003705 959 0.0
Ahg479462 jgi|Araly1|479462|fgenesh2_kg.3__2163__AT3G19480.1 259 5e-68
> Ahg929841 jgi|Araly1|929841|scaffold_302298.1
Length=1772
Score = 2867 bits (1552), Expect = 0.0
Identities = 1700/1773 (96%), Gaps = 3/1773 (0%)
Strand=Plus/Plus
Query 115 tctttctctGGTGTTCGCCAATGGCGGTGTTTCCTATCGGTTCTCACTTTGCACCGCCGC 174
||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||
Sbjct 3 TCTTTCTCTGGTGTTCGCCGATGGCGGTGTTACCTATCGGCTCTCACTTGGCACCGCCGC 62
Query 175 ATCAGTTGACGAAGAGACACGTCATCGCGACTTCATCACCTATCTCCATCTCCACCCGAT 234
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 63 ATCAGTTGACGAAGAGACACGCCGTCGCGACTTCATCACCTATCTCCATCTCCACCCGAT 122
Query 235 TGCCGCAAAATGTTTCCTTTTCGAAAGTATCTGGAGTTACAGGCTCGACGAGGTTATCCA 294
||||||||||||| || |||||||||||||||||||||||||||| ||||||| ||||
Sbjct 123 TGCCGCAAAATGTCTCATTTTCGAAAGTATCTGGAGTTACAGGCT---CGAGGTTGTCCA 179
Query 295 AACATGGTGTTCTCGTGAGGGCCGAGGATAAGATAAGGAGCTCTTCTTCTCCTTCTTCTC 354
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 AACATGGTGTTCTCGTCAGGGCCGAGGATAAGATAAGAAGCTCTTCTTCTCCTTCTTCTC 239
Query 355 TCGATGAACCAATCGATGAGGATTTGATGGACTCATCAGGATTATGTGACCCGTTATGCT 414
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 240 TCGATGAACCAATCGATGAGGATTTGATGGACTCATCAGGATCATGTGACCCATTATGCT 299
Query 415 CGGTTGATGAACCTAGTTCAAGTTACTTTGAGGCGAATTATCAGCCAAAGACAGATATAA 474
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 300 CGGTTGATGAACCTAGTTCGAGTTACTTCGAGGCGAATTATCAGCCAAAGACAGATATAA 359
Query 475 TCAAAGCTCTTGCTATTCTTGCAGCAGCTCTTACAGGAACAGCTGCCATTAACCATTCCT 534
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 360 TCAAAGCTCTTGCTATTCTTGCTGCAGCTCTTACAGGAACAGCTGCTATTAATCATTCCT 419
Query 535 GGGTCGCTGCTAATCAGGATGTTGCTATGGCATTGTTGTTTGGAATAGGATACGCTGGCA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 420 GGGTCGCTGCTAATCAGGATGTTGCTATGGCATTGTTGTTTGGAATAGGATACGCCGGAA 479
Query 595 TCATCTTTGAAGAGTCTTTAGCTTTTAATAAAAGTGGAATAGGACTTTTGATGGCTGTGA 654
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 TCATCTTCGAAGAGTCTTTAGCTTTTAATAAAAGTGGAATAGGACTGTTGATGGCTGTGA 539
Query 655 GTTTGTGGGTTGTGCGGAGCATAGGGGCTCCTTCAACTGAAATAGCTGTTTTAGATCTTC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTTTGTGGGTTGTGCGGAGCATAGGGGCTCCTTCAACTGAAATAGCTGTTTTAGATCTTC 599
Query 715 AACATGCAACAGCTGAAGTTAGTGAAATAGTATTTTTCTTGCTTGGCGCAATGACCATTG 774
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 AACATGCAACAGCTGAAGTTAGTGAAATCGTATTTTTCTTGCTTGGCGCAATGACCATTG 659
Query 775 TGGAGATAGTTGATGCTCACCAAGGGTTTAAGTTGGTTACAGACAATATCACCACTCGGA 834
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 660 TGGAGATAGTTGATGCTCACCAAGGATTTAAGTTGGTTACAGACAGTATCACCACTCGGA 719
Query 835 AGCCAAAGACACTTTTATGGGTGGTTGGCTTTGTGACTTTCTTTCTCAGTTCGATTCTAG 894
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGCCAAAGACTCTTTTATGGGTGGTTGGCTTTGTGACTTTCTTTCTCAGTTCGATTCTAG 779
Query 895 ACAATCTGACCTCTACCATTGTCATGGTTTCTTTAATAAGGAAACTGGTTCCACAATCAG 954
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 780 ACAATCTGACCTCTACCATTGTCATGGTTTCTTTACTAAGGAAACTGGTTCCTCAATCAG 839
Query 955 AGTACCGCAAACTTCTAGGAGGTGTGGTAGTGATAGCAGCAAATGCAGGAGGAGCATGGA 1014
||||||||||||||||||||| ||| || || |||||||||||||| |||||||||||||
Sbjct 840 AGTACCGCAAACTTCTAGGAGCTGTTGTGGTTATAGCAGCAAATGCTGGAGGAGCATGGA 899
Query 1015 CTCCAATTGGTGATGTTACTACAACTATGTTATGGATTCATGGTCAGATATCCACCTTGC 1074
||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 900 CTCCAATTGGTGATGTTACTACAACTATGCTATGGATTCATGGTCAGATAACAACCTTGC 959
Query 1075 CGACTATGAAGGACCTTTTTCTACCTTCGGTTGTGTCTCTTGCTGTTCCACTAGCCCTCA 1134
|||||||| ||| ||||||| ||||||||| ||| |||||||||||||||||||||||||
Sbjct 960 CGACTATGCAGGGCCTTTTTATACCTTCGGCTGTTTCTCTTGCTGTTCCACTAGCCCTCA 1019
Query 1135 TGTCTTTGACCAGTGAGGTAAATGGAAAGGAACAGGATCCTAAAGATGTATTGGCTTCTG 1194
|||| ||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 1020 TGTCCTTGACCAGTGAGGTAAATGGAAAGGGACAGGATTCTTCAGATGTATTGGCTTCTG 1079
Query 1195 AAAAGATGGCTCCAAGAGGGAAGCTAGTTTTTGGAGTTGGCCTTGGAGCATTGGTTTTTG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1080 AAAAGATGGCTCCAAGAGGGAAGCTAGTTTTTGGAGTTGGCCTTGGAGCATTGGTATTTG 1139
Query 1255 TTCCAGTCTTTAAAGCTCTAACTGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTG 1314
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCCAGTCTTTAAGGCTCTAACTGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTG 1199
Query 1315 GAGTTCTTTGGATCTTGACAGATGCCATTCATTACGGTGAATCAGAAAGACAAAAGCTCA 1374
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1200 GAGTTCTTTGGATCTTGACAGATGCCATTCATTACGGGGAATCAGAAAGACAAAAGCTCA 1259
Query 1375 AAGTACCTCAAGCCTTATCTCGAATAGACACACAAGGTGCTCTGTTTTTCCTCGGGATTC 1434
|||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1260 AAGTACCTCAGGCCTTGTCTCGAATCGACACACAAGGCGCTCTGTTTTTCCTCGGAATTC 1319
Query 1435 TTTTATCCGTAAGCAGCCTTGAGGCAGCTGGGATACTCCGGGAGATTGCAAACTACCTTG 1494
||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 1320 TTTTATCTGTAAGCAGCCTTGAGGCCGCTGGGATCCTTCGGGAGATTGCAAACTACCTTG 1379
Query 1495 ATGCCAATATACCCAACGTTGAGCTCATTGCAAGTGCTATCGGTGTTGTATCAGCAATCA 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1380 ATGCCAATATACCCAACGTTGAGCTCATTGCAAGTGCTATCGGTGTTGTATCTGCAATCA 1439
Query 1555 TAGACAATGTTCCACTGGTTGCAGCGACTATGGGGATGTATGATCTCACATCGTTCCCTC 1614
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TAGACAATGTTCCATTGGTTGCAGCGACTATGGGGATGTATGATCTCACATCGTTCCCTC 1499
Query 1615 AAGATTCTGAATTTTGGCAGCTCATTGCATTCTGTGCCGGCACTGGTGGTTCGATGCTTG 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AAGATTCTGAATTTTGGCAGCTCATTGCATTCTGTGCCGGCACTGGTGGTTCGATGCTTG 1559
Query 1675 TCATTGGTTCTGCTGCTGGTGTAGCCTTCATGGGGATGGAGAAAGTCGATTTCTTTTGGT 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TCATTGGTTCTGCTGCTGGTGTAGCCTTCATGGGGATGGAGAAAGTCGATTTCTTTTGGT 1619
Query 1735 ATTTCCGAAAGGTTAGTGGTTTTGCTTTTGCTGGCTATGCTGCTGGTATCGCAGCTTATC 1794
| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1620 ACTTCAGAAAGGTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCTGGTATCGCAGCTTATC 1679
Query 1795 TGGCCGTTCATAATCTTCATTTCGAGATCCCAACAACTGTGGCTCAGATCCCATTTCTCA 1854
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1680 TGGCGGTTCATAATCTTCATTTCGAGATCCCAACAACGGTGGCTCAGATCCCATTTCTCA 1739
Query 1855 CTGGTTCATAGGCTCCATCAATCTCTGTATTTC 1887
||||||| || ||| ||| |||||||||| |||
Sbjct 1740 CTGGTTCCTAAGCTGCATTAATCTCTGTAATTC 1772
> Ahg337140 jgi|Araly1|337140|fgenesh1_pg.C_scaffold_1003705
Length=1272
Score = 959 bits (519), Expect = 0.0
Identities = 1026/1268 (81%), Gaps = 45/1268 (4%)
Strand=Plus/Plus
Query 561 ATGGCATTGTTGTTTGGAATAGGATACGCTG-GCATCATCTTTGAAGAGTCTTTAGCTTT 619
|||||||||||||||||||||||||| | || ||||||||| || |||| |||| ||||
Sbjct 1 ATGGCATTGTTGTTTGGAATAGGATATG-TGTTCATCATCTTCGAGGAGTGTTTATCTTT 59
Query 620 TAATAAAAGTGGAATAGGACTTTTGATGGCTGTGAGTTTGTGGGTTGTGCGGAGCATAGG 679
|| |||| | ||||||| |||||||||||| || ||||||||||||||||| ||||| |
Sbjct 60 TAGTAAATGCGGAATAGCACTTTTGATGGCCGTCAGTTTGTGGGTTGTGCGAAGCATCGA 119
Query 680 GGC-TCCTTCAACTGAAATAGCTGTTTTAGATCTTCAACATGCAAC-AGCTGAAGTTAGT 737
| | | | || | ||||| | | |||||| |||||||| ||||| || ||||||||||
Sbjct 120 GACAT-C-TCTA--GAAATTGTTACTTTAGAGCTTCAACACGCAACAAG-TGAAGTTAGT 174
Query 738 GAAATAGTATTTTTCT-TGCTTGGCGCAATGACCATTGTGGAGATAGTTGATGCTCACCA 796
||||||| || | | |||||||||| ||||| |||||||||||| |||||| ||| ||
Sbjct 175 CAAATAGT-GTTCTATATGCTTGGCGCGATGACTATTGTGGAGATAATTGATGTTCATCA 233
Query 797 AGGGTTTAAGTTGGTTACAGACAATATCACCA-CTCGGAAGCCAAAGACACTTTTATGGG 855
||| || ||| |||||||||| ||| | || || |||| || |||| ||||||||||
Sbjct 234 AGGATTCAAGCTGGTTACAGATTGTAT-AACATCTAGGAAACCGAAGATACTTTTATGGA 292
Query 856 TGGTTGGCTTTGTGA-CTTTCTTTCTCAGTTCGATTCTAGACAATCTGACCTCTACCATT 914
|| |||| |||| || |||| || ||||| ||| |||| |||||||| || |||| ||
Sbjct 293 TGATTGGTTTTGCGACCTTT-TTCCTCAGCTCGGTTCTTGACAATCTAACAACTACTGTT 351
Query 915 GTCATGGTTTCTTTAATAAGGAA-ACTGGTTCCACAATCAGAGTACCGCAAACTTCTAGG 973
|| |||||||| || | | ||| ||| ||||| | |||||| |||||||| ||| ||||
Sbjct 352 GTTATGGTTTCGCTACTGA-GAAGACTAGTTCCTCCATCAGAATACCGCAAGCTTTTAGG 410
Query 974 AGGTGTGGTAGTGATAGCAGCAAATGCAGGAGGAGCATGGACTCCAATTGGTGATGTTAC 1033
|| || || || ||||||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 411 AGCAGTTGTGGTTATAGCAGCAAATGCAGGAGGAGCTTGGACTCCTATTGGTGATATTAC 470
Query 1034 TACAACTATGTTATGGATTCATGGTCAGATATCCACCTTGCCGACTATGAAGGACCTTTT 1093
|||||||||| ||||||| |||| || ||||| || || ||||||| ||| |||||||
Sbjct 471 TACAACTATGCTATGGATAAATGGCCATATATCAACATTTTCGACTATAAAGAACCTTTT 530
Query 1094 TCTACCTTC-G-GTTGTGTCTCTTGCTGTTCCACTAGCCCTCATGTCTTTGACCAGTGAG 1151
| ||||||| | | | | ||||||| ||||||||| || |||||||| ||||||||||||
Sbjct 531 TTTACCTTCAGCGAT-T-TCTCTTGTTGTTCCACTGGCTCTCATGTCATTGACCAGTGAG 588
Query 1152 GTAAATGGAAAGGAAC--AGGA----TCCTA-AAGATGTATTGGCTTCTGAAAAGA-TGG 1203
|||||||||| || || | | ||||| | || |||| |||| ||| | | | |
Sbjct 589 GTAAATGGAATGGGACTAAATACTCCTCCTACACCAT-TATTAGCTTATGATCATACT-G 646
Query 1204 CTCCAAGAGGGAAGCTAGTTTTTGGAGTTGGCCTTGGAGCATTGGTTTTTGTTCCAGTCT 1263
|||||||||| ||||| || ||||||||||| ||||||| ||| ||||||| ||| | |
Sbjct 647 CTCCAAGAGGAAAGCTTGTATTTGGAGTTGGTTTTGGAGCTTTGCTTTTTGTCCCACTAT 706
Query 1264 TTAAAGCTC--TAACTGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGTTC- 1320
|| ||| || |||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 707 TT-AAG-TCATTAACCGGATTGCCTCCTTACATGGGTATCTTGTTGGGTCTTGGAGT-CA 763
Query 1321 TTTGGATCTTGACAGATGCCATTCATTACGGTGAATCAGAAAGACAAAAGCTCAAAGTAC 1380
||||||| |||||||||| ||| ||||| ||||| | ||| |||||||| || ||| | |
Sbjct 764 TTTGGATTTTGACAGATGTCATCCATTATGGTGACTTAGAGAGACAAAACCTAAAACTTC 823
Query 1381 CTCAAGCCTTATCTCGAATAGACACACAAGGTGCTCTGTTTTTCCTCGGGATTCTT-TTA 1439
| || || || ||||| || || ||||||| ||| |||||||||| |||||| || |||
Sbjct 824 CACATGCTTTGTCTCGGATTGATTCACAAGGAGCTTTGTTTTTCCTTGGGATT-TTGTTA 882
Query 1440 TCCGTAAGCAGCCTTGAGGCAGCTGGGATACTCCGGGAGATTGCAAACTACCTTGATGC- 1498
| | ||||| ||||| || |||||||| ||| | |||||| ||||| ||||||||
Sbjct 883 GCTATGAGCAGTCTTGATGCGGCTGGGATTCTCAAAGTGATTGCGAACTATCTTGATGCT 942
Query 1499 CAATATACCCAACGTTGAGCTCATTGCAAGTGCTATCGGTGTTGTATCAGCAATCATAGA 1558
|| |||| |||| ||||| || || |||||| ||| ||||| || ||||| ||||||||
Sbjct 943 CA-TATAGCCAATGTTGAACTGATAGCAAGTATTATTGGTGTGGTGTCAGCCATCATAGA 1001
Query 1559 CAATGTTCCACTGGTTGCAGCGACTATGGGGATGTATGATCTCACATCG-TTCCCTCAAG 1617
||||| ||| |||||||||| ||||||||||||||||||||| || | ||||||||||
Sbjct 1002 TAATGTCCCATTGGTTGCAGCAACTATGGGGATGTATGATCTCTCAA-GATTCCCTCAAG 1060
Query 1618 ATTCTGAATTTTGGCAGCTCATTGCATTCTGTGCCGGCACTGGTGGTTCGATGCTTGTCA 1677
||||||| |||||||| |||||| | || || || || || || ||||| |||||| | |
Sbjct 1061 ATTCTGAGTTTTGGCAACTCATTTCCTTTTGCGCTGGAACAGGCGGTTCCATGCTTATTA 1120
Query 1678 TTGGTTCTGCTGCTGGTGTAGCCTTCATGGGGATGGAGAAAGTCGATTTCTTTTGGTATT 1737
||| ||||||||||| |||||||||||| | |||||||||||| |||||||||||||||
Sbjct 1121 CTGGATCTGCTGCTGGAGTAGCCTTCATGAGTATGGAGAAAGTCAATTTCTTTTGGTATT 1180
Query 1738 TCCGAAAGGTTAGTGGTTTTGCTTTTGCTGGCTATGCTGCTGGTATCGC-AGCTTATCTG 1796
| || ||||| |||||||||||||||||||| | | |||| ||||||| | |||| |||
Sbjct 1181 TTCGTAAGGTGAGTGGTTTTGCTTTTGCTGGTTTTACTGCGGGTATCGTGA-CTTACCTG 1239
Query 1797 GCCGTTCA 1804
| |||||
Sbjct 1240 GTGGTTCA 1247
> Ahg479462 jgi|Araly1|479462|fgenesh2_kg.3__2163__AT3G19480.1
Length=1942
Score = 259 bits (140), Expect = 5e-68
Identities = 155/162 (96%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 1965 AAAAAATCAACTATGTAATTTGTTTCATGTACACTCGA-TTGTATCATTAGTACAGAATA 2023
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1942 AAAAAATCAACTGTGTAATTTGTTTCATGTACACTCGATTTGTATCATTAGTACAGAATA 1883
Query 2024 AATCATCATTTAAGATTATATCGATCTCTGAGTTTTTTCTTATGTGCATCCATGTAAAGT 2083
||| ||||||||||||||| || || || |||||||||||||||||||||||||||||||
Sbjct 1882 AATAATCATTTAAGATTATGTCTATTTC-GAGTTTTTTCTTATGTGCATCCATGTAAAGT 1824
Query 2084 ATTAACCTATAGTTTGAGGAAAACAAACTCTTCAATGGCAGG 2125
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 ATTAACCTATAGTTTGAGGAAAACAAACTCTTCAATGGCAGG 1782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79951424255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5