BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19500.1
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342085 jgi|Araly1|342085|fgenesh1_pg.C_scaffold_3001848 1297 0.0
> Ahg342085 jgi|Araly1|342085|fgenesh1_pg.C_scaffold_3001848
Length=813
Score = 1297 bits (702), Expect = 0.0
Identities = 777/814 (95%), Gaps = 2/814 (0%)
Strand=Plus/Plus
Query 47 ATGGGAGATACCGCAGAGGATCAGGACGACCGAGCTATGATGGAAGCTGAAGGAGTAACG 106
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGAGATACCGCAGAGGATCAGAACGACCGAGCTATGATGGAAGCTGAAGGAGTCACG 60
Query 107 AGCTTCTCCGAACTTCTTATGTTCTCTGACGGCGTTCTCAGCTCCTCTTCCGACCACCAA 166
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AGCTTCTCCGAACTTCTTATGTTCTCTGACGGCGTTCTCAGCTCCTCCTCCGACCACCAA 120
Query 167 CCTGAGGGTAATGTCGGCGATGGTGGAGAAGACAGTTTAGGTTTTGTATTCTCCGGCAAA 226
| ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 121 CGTGAGGGTAATGTCGGCGATCGTGGAGAAGACAGCTTGGGTTTTGTATTCTCCGGCAAA 180
Query 227 ACTGGCTCAAGAATGCTCTGTTTTAGTGGAGGCTATCAAAACGACGACGAGTCACTCTTC 286
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 181 ACTGGCTCAAGAATGCTCTGTTTTAGCGGAGGATATCAAAACGACGACGAGTCACTCTTC 240
Query 287 CTAGAACCTTCTGTTCCAACCTCCGGAGTCTCTGATCTTGACCCTTCATGCATTAAGATT 346
||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct 241 CTAGAACCTTCTGTTCCCTCCTTGGGAGTCTCTGTTCTTGACCCTTCATGCATTAAGATC 300
Query 347 GATTGCAGGAACTCAAACGACGCGTGTACGGTCGATAAATCTA-CTAAATCATCAACCAA 405
|||| || ||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 301 GATTCCAAGAACTCAAACGACGCGTGTACGGTCGATAAATC-ACCTAAATCATCAAACAA 359
Query 406 GAAGAGAACCGGAACGGGTAATGGGCAAGAGTCGGATCAAAATCGAAAACCGGGCAAGAA 465
||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||
Sbjct 360 GAAGAGAACCGGAACGGGTAATGGGCAAGAGCCAGATCAAAATCGAAAACCGGACAAGAA 419
Query 466 AGGGAAACGAAATCAAGAGAAATCATCAGTTGGAATTGCAAAGGTCAGGAAAGAAAGGTT 525
| | || |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATGCAAGCGAAATCAGGATAAATCATCAGTTGGAATTGCAAAGGTCAGGAAAGAAAGGTT 479
Query 526 AGGGGAAAGAATTGCAGCGTTGCAGCAGTTGGTTTCTCCATACGGCAAGACAGATGCAGC 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGGGGAAAGAATTGCAGCGTTGCAGCAGTTGGTTTCTCCATACGGCAAGACAGATGCAGC 539
Query 586 TTCTGTGTTGCATGAAGCGATGGGTTACATCAAATTCTTACAAGATCAGATTCAAGTCCT 645
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 TTCTGTGTTGCATGAAGCGATGGGTTACATCAAATTCTTACAGGATCAGATTCAAGTCCT 599
Query 646 TTGCTCTCCTTATCTAATCAACCATTCTCTCGACGGTGGAGTTGTCACCGGAGATGTAAT 705
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 TTGCTCTCCTTATCTAATCAACCATTCTCTTGACGGTGGAGTTGTCACCGGAGATGTAAT 659
Query 706 GGCGGCGATGAAAGCGAAAGACTTGAGAAGCAGAGGATTATGTCTAGTACCTGTCTCATC 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGCGGCGATGAAAGCGAAAGACTTGAGAAGCAGAGGATTATGTCTAGTACCTGTCTCATC 719
Query 766 CACCGTACACGTGGAAAATTCCAACGGTGCTGATTTCTGGTCACCTGCTACTATGGGTCA 825
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 CACCGTACACGTGGAAAACTCCAACGGTGCTGATTTCTGGTCACCTGTTACTATGGGTCA 779
Query 826 CACTACGTCACCGTCGTTACCTCAAGGATTTTAA 859
||||||||||| ||| | ||||| |||||||||
Sbjct 780 CACTACGTCACAGTCACTGCCTCACGGATTTTAA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42202069119
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5