BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19508.1
Length=521
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929843 jgi|Araly1|929843|scaffold_302300.1 427 3e-119
> Ahg929843 jgi|Araly1|929843|scaffold_302300.1
Length=288
Score = 427 bits (231), Expect = 3e-119
Identities = 270/289 (93%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 3 GTGTTGCAGAAGGTAAACGAAAATGAAGAAGGTGCTGAGAGTATACGGCGGCGT-TATGA 61
||||||||||||||| | |||||||||||| ||||||||||| ||||||||||| | |||
Sbjct 1 GTGTTGCAGAAGGTAGAGGAAAATGAAGAAAGTGCTGAGAGTTTACGGCGGCGTGT-TGA 59
Query 62 GGCTGGTGAGACTTTTGCCGGCGGATTCAAGGCCGTATTACGCCAAGTACGCCAGGGAGA 121
|||| ||||| ||||| ||||| || |||||||||||||||| ||||||||||||||||
Sbjct 60 GGCTAGTGAGGCTTTTACCGGCAGACACAAGGCCGTATTACGCTAAGTACGCCAGGGAGA 119
Query 122 ATTTCGTTAATTACCGTGAAGTCGATCAAAGCGAAACATCCCTCGACGAACTCTTCCAGC 181
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 120 ATTTCGTTAACTACCGTGAAGTCGACCAAAGCGAAACATCCCTCGACGAACTCTTTCAAC 179
Query 182 GAGCCTATAATCACTCACTTTGGGTACTCAAGAAGTACTCAATTGACGAATCAGCAGCGA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGCCTATAATCACTCACTTTGGGTACTCAAGAAGTACTCAATTGACGAATCAGCAGCGA 239
Query 242 CGAAGTTGAAAGAGATTTGTTTTGAATAATAACGCACACCAAGTGTTCG 290
|||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 240 CGAAGTTGAAAGAGATTTGTTTTGAATAATAATGCACACCAAATGTTCG 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18963327733
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5