BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19510.1 Length=2769 Score E Sequences producing significant alignments: (Bits) Value Ahg479466 jgi|Araly1|479466|fgenesh2_kg.3__2167__AT3G19510.1 3542 0.0 > Ahg479466 jgi|Araly1|479466|fgenesh2_kg.3__2167__AT3G19510.1 Length=2578 Score = 3542 bits (1918), Expect = 0.0 Identities = 2269/2428 (93%), Gaps = 66/2428 (3%) Strand=Plus/Plus Query 156 AATGTATAAAGCAGTAAGTAAGCGGGTAACTAGAAGTAGTGGATCTGGTTTGAAGCAGAC 215 |||| ||| ||||| ||||| ||| ||||||| |||||||||||||||||||||||||| Sbjct 104 AATGCATAGAGCAGCCAGTAAACGGTTAACTAGGAGTAGTGGATCTGGTTTGAAGCAGAC 163 Query 216 AAATGTAGATAATGGAGGAGAGATTAGTCCAACTGTTGACAGAGTATCTGAACAAGG-C- 273 ||| | | | ||||| || |||||||||||||| ||||||||||||||| | Sbjct 164 AAA--T-G----T-----AGAGACTAATCCAACTGTTGACAAAGTATCTGAACAAGGCCA 211 Query 274 AAATCATCAGAGGCAGGGAGTCACATGCCAACTGATGCAAACGGAAATGGACATTTGCAT 333 |||| ||||||||||||||||||||||||| ||||||||| | |||||||||||||||| Sbjct 212 AAAT--TCAGAGGCAGGGAGTCACATGCCAAATGATGCAAATGAAAATGGACATTTGCAT 269 Query 334 CATGAGATTATGGATCATGGAAAGGGGAATGAAGAACAGAAACCAACCCCTCAAACCGTG 393 ||||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||| | Sbjct 270 CATGATATTATGGAAAATGGAAAGGGGAATGAACAACTGAAACCAACCCCTCAAACCGGG 329 Query 394 AAGAAG-GATTCTAATACCAATACCAAATTTTCAGGGTCTCATCGTGAGCTTGTCATCGG 452 |||||| || |||| ||| ||||||||| |||||||||| |||||||| |||||||| || Sbjct 330 AAGAAGAGA-TCTAGTACTAATACCAAAATTTCAGGGTCGCATCGTGAACTTGTCATTGG 388 Query 453 TCTTCCTTGCCGTGGACAATTTGAAATCCACAACCGGTCCAGGGCATCTACGAGTTCGAA 512 ||||||||||| || ||||||||||| | | | ||||||||| |||||||||||||||| Sbjct 389 TCTTCCTTGCCACGGGCAATTTGAAAT-C-C-ATCGGTCCAGGTCATCTACGAGTTCGAA 445 Query 513 GAGGTTAGGAGGAGGTGGAGAAAGGAATGTGTTGTTTGCAAGTCACAAGAGAGCTCAGAG 572 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 446 GAGGTTAGGAGGAGGTGGAGAAAGGAATGTGTTGTTTTCAAGTCACAAGGGAGCTCAGAG 505 Query 573 ATCTAAGGAAGATGCTGGACCATCTTCGGTTGTTGCTAATTCCACACCTGTAGGTCGACC 632 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 506 ATCTAAGGAAGATGCTGGATCATCTTCGGTTGCTGCTAATTCCACACCTGTAGGTCGACC 565 Query 633 AAAGAAAAAGAATAAGACTATGAACAAAGGACAAGTTAGAGAAGATGATGAGTACACAAG 692 |||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 566 AAAGAAAAGGAATAAGACTATGAAGAAAGGAGAAGTTAGAGAAGATGATGAGTACACAAG 625 Query 693 AATCAAAAAGAAACTTCGATACTTTCTAAACCGGATTAACTATGAGCAAAGCCTAATTGA 752 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 626 AATCAAAAAGAAACTTCGATACTTTCTAAACCGGATTAGCTATGAGCAAAACCTAATTGA 685 Query 753 CGCCTATTCGTTAGAAGGCTGGAAAGGTTCAAGCCTGGAAAAGATAAGGCCAGAGAAAGA 812 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 686 CGCCTATTCTTTAGAAGGCTGGAAAGGTTCAAGCCTGGAAAAGATAAGGCCAGAGAAAGA 745 Query 813 GCTTGAACGAGCCACAAAGGAAATTTTGCGGCGCAAGCTTAAAATTAGAGATCTTTTTCA 872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 746 GCTTGAACGAGCCACAAAGGAAATTTTGCGGCGCAAGCTTAAAATTAGAGATCTTTTTCA 805 Query 873 GCACCTTGACACACTCTGTGCTGAAGGAAGCCTTCCAGAGTCTTTATTTGATACTGATGG 932 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 806 GCACCTTGACACACTCTGTGCTGAAGGAAGCCTTCCAGAGTCTTTATTTGATTCTGATGG 865 Query 933 AGAGATTTCTAGCGAGGATATCTTCTGTGCAAAATGTGGTTCAAAGGACTTGTCTGTTGA 992 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 866 AGAGATTTCTAGCGAGGATATCTTTTGTGCAAAATGTGGTTCAAAGGACTTGTCTGTTGA 925 Query 993 TAATGATATCATACTATGCGATGGGTTTTGCGATCGAGGCTTTCACCAATACTGTCTTGA 1052 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 926 TAATGATATCATACTATGTGATGGGTTTTGCGATCGAGGCTTTCACCAATACTGTCTTGA 985 Query 1053 ACCACCTCTGCGGAAAGAAGATATTCCTCCGGATGATGAGGGTTGGCTATGCCCCGGATG 1112 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 986 ACCACCTCTGCGGAAAGAAGATATTCCTCCGGATGATGAGAGTTGGCTATGCCCCGGATG 1045 Query 1113 TGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAA-TTTTCGG 1171 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 1046 TGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAACTTTT-GG 1104 Query 1172 TCAGCGACAGTTGGGAGAAAATATTTCCTGAGGCAGCAGCAGCGCTGGTTGGTGGAGGTC 1231 |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| Sbjct 1105 TCAGCGACAGTTGGGAGAAAATATTTCCTGAGGCTGCAGCAGCGTTGGCTGGTGGAGGTC 1164 Query 1232 AAAATCTTGACTGTGATCTTCCTTCagatgattctgatgatgaagagtatgatccagatt 1291 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1165 AAAATCTTGACTGTGATCTTCCTTCAGATGATTCTGATGATGAAGAGTATGATCCAGATG 1224 Query 1292 gtttgaatgataatgaaaatgatgaagatgGCAGTGATGACAATGAAGAATCTGAGAACG 1351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1225 GTTTGAATGATAATGAAAATGATGAAGATGGCAGTGATGACAATGAAGAATCTGAGAACG 1284 Query 1352 AAGATGGTAGTTCTGATGAAACTGAAT-TCACATCTGCATCTGACGAAATGATTGAGTCA 1410 |||||| ||||||||||||| |||||| | ||||||||||||||| |||||||||||||| Sbjct 1285 AAGATGATAGTTCTGATGAATCTGAATCT-ACATCTGCATCTGACAAAATGATTGAGTCA 1343 Query 1411 TTTAAAGAAGGGAAAGATATAATGAAAGATGTAATGGCCCTTCCATCtgatgattctgag 1470 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1344 TTTAAAGAAGGGAAAGATATAATGAAAGATATAATGGCCCTTCCATCTGATGATTCTGAG 1403 Query 1471 gatgatgactatgatcctgatgccccgacttgtgatgatgatAAAGAAAGTTCAAATTCT 1530 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1404 GATGATGACTATGATCCTGATGCCCCGACTTGTGATGAAGATAAAGAAAGTTCAAATTCT 1463 Query 1531 GATTGTACATCAGAC-ACTGAAGATCTTGAAACTTCCTTCAAAGGAGATGAGACTAATCA 1589 ||||||||||||||| | |||||||||||||||||| ||||||||||||||| ||||||| Sbjct 1464 GATTGTACATCAGACTA-TGAAGATCTTGAAACTTCTTTCAAAGGAGATGAGTCTAATCA 1522 Query 1590 GCAAGCTGAAGATACACCACTTGAGGATCCTGGCAGACAGACGTCTCAGCTCCAAG-GTG 1648 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||| Sbjct 1523 GCAAGCTGAAGATACACCATTTGAGGATCCTGGCAGACAGACGTCTCAGCTCCC-GTGTG 1581 Query 1649 ATGCAATTTTAGAGTCAGATGTTGGGCTTGATGATGGTCCTGCCGGTGTATCCAGAAGGA 1708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1582 ATGCAATTTTAGAGTCAGATGTTGGGCTTGATGATGGTCCTGCCGGTGTATCCAGAAGGA 1641 Query 1709 GGAATGTTGAAAGGCTGGATTACAAAAAGTTGTATGATGAGGAATATGACAATGTTCCGA 1768 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1642 GGAATGTTGAAAGACTGGATTACAAAAAGTTGTATAATGAGGAATATGACAATGTTCCGA 1701 Query 1769 CTTCGTCAAGTGATGATGACGATTGGGATAAAACTGCAAGAATGGGAAAAGAAGATTCCG 1828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1702 CTTCGTCAAGTGATGATGACGATTGGGATAAAACTGCAAGAATGGGAAAAGAAGATTCCG 1761 Query 1829 AGTCGGAAGATGAAGGGGACACTGTACCTCTGAAACAGTCTTCAAATGCAGAAGATCATA 1888 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1762 AGTCAGAAGATGAAGGGGACATTGTACCTCTGAAACAGTCTTCAAATGCAGAAGATCATA 1821 Query 1889 CTTCTAAGAAACTTATACGGAAGTCGAAAAGGGCAGATAAAAAGGATACCTTAGAAATGC 1948 |||||||||||| || |||||||||||||||| ||||||||||||||||||| ||| ||| Sbjct 1822 CTTCTAAGAAACCTAGACGGAAGTCGAAAAGGACAGATAAAAAGGATACCTTGGAAGTGC 1881 Query 1949 CACAAGAAGGTCCTGGAGAAAATGGTGGTTCTGGTGAAATTGAAAAAAGCAGCTCTTCAG 2008 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1882 CACAAGAATGTCCTGGAGAAAATGGTGGTTCTGGTGAAATTGAAAAAAGCAGCTCTTCAG 1941 Query 2009 CATGTAAACAGACAGATCCCAAAACTCAGAGACTGTACATATCTTTTCAAGAGAATCAAT 2068 || |||||||||||||||||||||||||||| | ||||||||||||||||| |||| || Sbjct 1942 CAAATAAACAGACAGATCCCAAAACTCAGAGATTATACATATCTTTTCAAGAAAATCGAT 2001 Query 2069 ATCCAGACAAAGCCACGAAGGAGAGCTTAGCCAAAGAGCTACAAATGACAGTTAAGCAAG 2128 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2002 ATCCAGACAAAGCCACGAAGGAGAGCTTAGCCAAAGAGCTACAAATGACAGTTACGCAAG 2061 Query 2129 TTAATAACTGGTTTAAGCATAGGCGTTGGTCGATAAACAGCAAACCTTTAGTTTCAGAGG 2188 ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| Sbjct 2062 TTAATAACTGGTTTAAGAATAGGCGTTCGTCGATAAACAGCAAACCTTTAGTTTCTGAGG 2121 Query 2189 AAAATGTCGAGAAGTTAAAAACAGGCAAGGAAGGTGAATGTGAGACATCTGTTGCTGGAA 2248 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2122 AAAATGTCGAGAAGTTAAAAACAGGTAAGGAAGGTGAATGTGAGACATCTGTTGCTGGAA 2181 Query 2249 GTAGCAAACAAACTATGGAAACCGAGTCAGTTGCAGAGAA-A----C----CA----A-- 2293 ||||| ||||||||||||||| ||||||||||||||||| | | || | Sbjct 2182 GTAGCGTACAAACTATGGAAACTGAGTCAGTTGCAGAGAATAAGAGCAGGGCATCGGAAT 2241 Query 2294 C--C-AATACTGGATCACGGAAAAGAAGAAGAAAGTAGACTTTAGATTCAATCATGAAGG 2350 | | ||||||||||| |||||||||||||||||||| | |||||||||||||||||||| Sbjct 2242 CAACCAATACTGGATCGCGGAAAAGAAGAAGAAAGTAAATTTTAGATTCAATCATGAAGG 2301 Query 2351 TTTTAGATCTAATGCAAGGACA-ATACTGGAACACATACTTACCCAAA-CCCCGAGATAT 2408 |||||||||||||||||||||| | | || ||||||||||| |||||| |||| |||||| Sbjct 2302 TTTTAGATCTAATGCAAGGACATAAA-TG-AACACATACTT-CCCAAAACCCCAAGATAT 2358 Query 2409 GAAGACACCAAACCCTGCAAAGCATCGGGTTTGTTCAGTTCTTTGTTTCACATTTTTGGG 2468 ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 2359 GAAGACATCAAACCCTGCAAAGCATCGGGTTTGTTCAGTTGTTTGTTTCGCATTTTTGGG 2418 Query 2469 GTACTTTGAAGACCTTGAAATTTGAGGCAAAAGAAAGAAAGAAAGATTTTCTTCGAAATT 2528 |||| | | ||| |||||||||||||||||||||| |||||||| ||||| Sbjct 2419 GTACCT------C---GAA-TTTGAGGCAAAAGAAAGAAAGA----TTTTCTTCAAAATT 2464 Query 2529 GGATGATAGGTTCATTTTTAACAGTTAA 2556 |||||||| ||||||||||||| ||||| Sbjct 2465 GGATGATATGTTCATTTTTAACGGTTAA 2492 Score = 152 bits (82), Expect = 1e-35 Identities = 97/104 (93%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 20 TTCTCAATTCTCGCGGGACATTTCGCGGGCGAGGGAAAAAGGAATCTACAAGTATTT-AA 78 |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| || Sbjct 1 TTCTCAATCCTCGCGGGACATTTATCGGGCGAGGGAAAAAGGAATCTACTAGTATTTAAA 60 Query 79 ACCTTTGCTGATTTAGAAACGCCTGAGTGCATCATCTTCGAGGA 122 ||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 61 ACC-TTGCTGATTTAGAAACGCCTGAGTGCATTATCTTCGAGGA 103 Score = 86.1 bits (46), Expect = 1e-15 Identities = 75/87 (86%), Gaps = 9/87 (10%) Strand=Plus/Plus Query 2582 TATGAAAGTTTTTGTTTATTTCCATCTGGAGAGATGTTTTG------A--GTTATGGTTT 2633 |||||||||||||| ||||||||| || ||||||||||||| | ||| |||||| Sbjct 2493 TATGAAAGTTTTTG-TTATTTCCAACTAGAGAGATGTTTTGACATAAATTGTTTTGGTTT 2551 Query 2634 CTGTAATCGATAGAGACCGGTTTAAGA 2660 ||||||||||||||||||||||||||| Sbjct 2552 CTGTAATCGATAGAGACCGGTTTAAGA 2578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104481542035 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5