BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19510.1
Length=2769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479466 jgi|Araly1|479466|fgenesh2_kg.3__2167__AT3G19510.1 3542 0.0
> Ahg479466 jgi|Araly1|479466|fgenesh2_kg.3__2167__AT3G19510.1
Length=2578
Score = 3542 bits (1918), Expect = 0.0
Identities = 2269/2428 (93%), Gaps = 66/2428 (3%)
Strand=Plus/Plus
Query 156 AATGTATAAAGCAGTAAGTAAGCGGGTAACTAGAAGTAGTGGATCTGGTTTGAAGCAGAC 215
|||| ||| ||||| ||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 104 AATGCATAGAGCAGCCAGTAAACGGTTAACTAGGAGTAGTGGATCTGGTTTGAAGCAGAC 163
Query 216 AAATGTAGATAATGGAGGAGAGATTAGTCCAACTGTTGACAGAGTATCTGAACAAGG-C- 273
||| | | | ||||| || |||||||||||||| ||||||||||||||| |
Sbjct 164 AAA--T-G----T-----AGAGACTAATCCAACTGTTGACAAAGTATCTGAACAAGGCCA 211
Query 274 AAATCATCAGAGGCAGGGAGTCACATGCCAACTGATGCAAACGGAAATGGACATTTGCAT 333
|||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 212 AAAT--TCAGAGGCAGGGAGTCACATGCCAAATGATGCAAATGAAAATGGACATTTGCAT 269
Query 334 CATGAGATTATGGATCATGGAAAGGGGAATGAAGAACAGAAACCAACCCCTCAAACCGTG 393
||||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 270 CATGATATTATGGAAAATGGAAAGGGGAATGAACAACTGAAACCAACCCCTCAAACCGGG 329
Query 394 AAGAAG-GATTCTAATACCAATACCAAATTTTCAGGGTCTCATCGTGAGCTTGTCATCGG 452
|||||| || |||| ||| ||||||||| |||||||||| |||||||| |||||||| ||
Sbjct 330 AAGAAGAGA-TCTAGTACTAATACCAAAATTTCAGGGTCGCATCGTGAACTTGTCATTGG 388
Query 453 TCTTCCTTGCCGTGGACAATTTGAAATCCACAACCGGTCCAGGGCATCTACGAGTTCGAA 512
||||||||||| || ||||||||||| | | | ||||||||| ||||||||||||||||
Sbjct 389 TCTTCCTTGCCACGGGCAATTTGAAAT-C-C-ATCGGTCCAGGTCATCTACGAGTTCGAA 445
Query 513 GAGGTTAGGAGGAGGTGGAGAAAGGAATGTGTTGTTTGCAAGTCACAAGAGAGCTCAGAG 572
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 446 GAGGTTAGGAGGAGGTGGAGAAAGGAATGTGTTGTTTTCAAGTCACAAGGGAGCTCAGAG 505
Query 573 ATCTAAGGAAGATGCTGGACCATCTTCGGTTGTTGCTAATTCCACACCTGTAGGTCGACC 632
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 506 ATCTAAGGAAGATGCTGGATCATCTTCGGTTGCTGCTAATTCCACACCTGTAGGTCGACC 565
Query 633 AAAGAAAAAGAATAAGACTATGAACAAAGGACAAGTTAGAGAAGATGATGAGTACACAAG 692
|||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 566 AAAGAAAAGGAATAAGACTATGAAGAAAGGAGAAGTTAGAGAAGATGATGAGTACACAAG 625
Query 693 AATCAAAAAGAAACTTCGATACTTTCTAAACCGGATTAACTATGAGCAAAGCCTAATTGA 752
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 626 AATCAAAAAGAAACTTCGATACTTTCTAAACCGGATTAGCTATGAGCAAAACCTAATTGA 685
Query 753 CGCCTATTCGTTAGAAGGCTGGAAAGGTTCAAGCCTGGAAAAGATAAGGCCAGAGAAAGA 812
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 CGCCTATTCTTTAGAAGGCTGGAAAGGTTCAAGCCTGGAAAAGATAAGGCCAGAGAAAGA 745
Query 813 GCTTGAACGAGCCACAAAGGAAATTTTGCGGCGCAAGCTTAAAATTAGAGATCTTTTTCA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 GCTTGAACGAGCCACAAAGGAAATTTTGCGGCGCAAGCTTAAAATTAGAGATCTTTTTCA 805
Query 873 GCACCTTGACACACTCTGTGCTGAAGGAAGCCTTCCAGAGTCTTTATTTGATACTGATGG 932
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 806 GCACCTTGACACACTCTGTGCTGAAGGAAGCCTTCCAGAGTCTTTATTTGATTCTGATGG 865
Query 933 AGAGATTTCTAGCGAGGATATCTTCTGTGCAAAATGTGGTTCAAAGGACTTGTCTGTTGA 992
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 866 AGAGATTTCTAGCGAGGATATCTTTTGTGCAAAATGTGGTTCAAAGGACTTGTCTGTTGA 925
Query 993 TAATGATATCATACTATGCGATGGGTTTTGCGATCGAGGCTTTCACCAATACTGTCTTGA 1052
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TAATGATATCATACTATGTGATGGGTTTTGCGATCGAGGCTTTCACCAATACTGTCTTGA 985
Query 1053 ACCACCTCTGCGGAAAGAAGATATTCCTCCGGATGATGAGGGTTGGCTATGCCCCGGATG 1112
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 986 ACCACCTCTGCGGAAAGAAGATATTCCTCCGGATGATGAGAGTTGGCTATGCCCCGGATG 1045
Query 1113 TGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAA-TTTTCGG 1171
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1046 TGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAACTTTT-GG 1104
Query 1172 TCAGCGACAGTTGGGAGAAAATATTTCCTGAGGCAGCAGCAGCGCTGGTTGGTGGAGGTC 1231
|||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||
Sbjct 1105 TCAGCGACAGTTGGGAGAAAATATTTCCTGAGGCTGCAGCAGCGTTGGCTGGTGGAGGTC 1164
Query 1232 AAAATCTTGACTGTGATCTTCCTTCagatgattctgatgatgaagagtatgatccagatt 1291
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 AAAATCTTGACTGTGATCTTCCTTCAGATGATTCTGATGATGAAGAGTATGATCCAGATG 1224
Query 1292 gtttgaatgataatgaaaatgatgaagatgGCAGTGATGACAATGAAGAATCTGAGAACG 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 GTTTGAATGATAATGAAAATGATGAAGATGGCAGTGATGACAATGAAGAATCTGAGAACG 1284
Query 1352 AAGATGGTAGTTCTGATGAAACTGAAT-TCACATCTGCATCTGACGAAATGATTGAGTCA 1410
|||||| ||||||||||||| |||||| | ||||||||||||||| ||||||||||||||
Sbjct 1285 AAGATGATAGTTCTGATGAATCTGAATCT-ACATCTGCATCTGACAAAATGATTGAGTCA 1343
Query 1411 TTTAAAGAAGGGAAAGATATAATGAAAGATGTAATGGCCCTTCCATCtgatgattctgag 1470
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1344 TTTAAAGAAGGGAAAGATATAATGAAAGATATAATGGCCCTTCCATCTGATGATTCTGAG 1403
Query 1471 gatgatgactatgatcctgatgccccgacttgtgatgatgatAAAGAAAGTTCAAATTCT 1530
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1404 GATGATGACTATGATCCTGATGCCCCGACTTGTGATGAAGATAAAGAAAGTTCAAATTCT 1463
Query 1531 GATTGTACATCAGAC-ACTGAAGATCTTGAAACTTCCTTCAAAGGAGATGAGACTAATCA 1589
||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1464 GATTGTACATCAGACTA-TGAAGATCTTGAAACTTCTTTCAAAGGAGATGAGTCTAATCA 1522
Query 1590 GCAAGCTGAAGATACACCACTTGAGGATCCTGGCAGACAGACGTCTCAGCTCCAAG-GTG 1648
||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 1523 GCAAGCTGAAGATACACCATTTGAGGATCCTGGCAGACAGACGTCTCAGCTCCC-GTGTG 1581
Query 1649 ATGCAATTTTAGAGTCAGATGTTGGGCTTGATGATGGTCCTGCCGGTGTATCCAGAAGGA 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 ATGCAATTTTAGAGTCAGATGTTGGGCTTGATGATGGTCCTGCCGGTGTATCCAGAAGGA 1641
Query 1709 GGAATGTTGAAAGGCTGGATTACAAAAAGTTGTATGATGAGGAATATGACAATGTTCCGA 1768
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1642 GGAATGTTGAAAGACTGGATTACAAAAAGTTGTATAATGAGGAATATGACAATGTTCCGA 1701
Query 1769 CTTCGTCAAGTGATGATGACGATTGGGATAAAACTGCAAGAATGGGAAAAGAAGATTCCG 1828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 CTTCGTCAAGTGATGATGACGATTGGGATAAAACTGCAAGAATGGGAAAAGAAGATTCCG 1761
Query 1829 AGTCGGAAGATGAAGGGGACACTGTACCTCTGAAACAGTCTTCAAATGCAGAAGATCATA 1888
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1762 AGTCAGAAGATGAAGGGGACATTGTACCTCTGAAACAGTCTTCAAATGCAGAAGATCATA 1821
Query 1889 CTTCTAAGAAACTTATACGGAAGTCGAAAAGGGCAGATAAAAAGGATACCTTAGAAATGC 1948
|||||||||||| || |||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 1822 CTTCTAAGAAACCTAGACGGAAGTCGAAAAGGACAGATAAAAAGGATACCTTGGAAGTGC 1881
Query 1949 CACAAGAAGGTCCTGGAGAAAATGGTGGTTCTGGTGAAATTGAAAAAAGCAGCTCTTCAG 2008
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 CACAAGAATGTCCTGGAGAAAATGGTGGTTCTGGTGAAATTGAAAAAAGCAGCTCTTCAG 1941
Query 2009 CATGTAAACAGACAGATCCCAAAACTCAGAGACTGTACATATCTTTTCAAGAGAATCAAT 2068
|| |||||||||||||||||||||||||||| | ||||||||||||||||| |||| ||
Sbjct 1942 CAAATAAACAGACAGATCCCAAAACTCAGAGATTATACATATCTTTTCAAGAAAATCGAT 2001
Query 2069 ATCCAGACAAAGCCACGAAGGAGAGCTTAGCCAAAGAGCTACAAATGACAGTTAAGCAAG 2128
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2002 ATCCAGACAAAGCCACGAAGGAGAGCTTAGCCAAAGAGCTACAAATGACAGTTACGCAAG 2061
Query 2129 TTAATAACTGGTTTAAGCATAGGCGTTGGTCGATAAACAGCAAACCTTTAGTTTCAGAGG 2188
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 2062 TTAATAACTGGTTTAAGAATAGGCGTTCGTCGATAAACAGCAAACCTTTAGTTTCTGAGG 2121
Query 2189 AAAATGTCGAGAAGTTAAAAACAGGCAAGGAAGGTGAATGTGAGACATCTGTTGCTGGAA 2248
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2122 AAAATGTCGAGAAGTTAAAAACAGGTAAGGAAGGTGAATGTGAGACATCTGTTGCTGGAA 2181
Query 2249 GTAGCAAACAAACTATGGAAACCGAGTCAGTTGCAGAGAA-A----C----CA----A-- 2293
||||| ||||||||||||||| ||||||||||||||||| | | || |
Sbjct 2182 GTAGCGTACAAACTATGGAAACTGAGTCAGTTGCAGAGAATAAGAGCAGGGCATCGGAAT 2241
Query 2294 C--C-AATACTGGATCACGGAAAAGAAGAAGAAAGTAGACTTTAGATTCAATCATGAAGG 2350
| | ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2242 CAACCAATACTGGATCGCGGAAAAGAAGAAGAAAGTAAATTTTAGATTCAATCATGAAGG 2301
Query 2351 TTTTAGATCTAATGCAAGGACA-ATACTGGAACACATACTTACCCAAA-CCCCGAGATAT 2408
|||||||||||||||||||||| | | || ||||||||||| |||||| |||| ||||||
Sbjct 2302 TTTTAGATCTAATGCAAGGACATAAA-TG-AACACATACTT-CCCAAAACCCCAAGATAT 2358
Query 2409 GAAGACACCAAACCCTGCAAAGCATCGGGTTTGTTCAGTTCTTTGTTTCACATTTTTGGG 2468
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2359 GAAGACATCAAACCCTGCAAAGCATCGGGTTTGTTCAGTTGTTTGTTTCGCATTTTTGGG 2418
Query 2469 GTACTTTGAAGACCTTGAAATTTGAGGCAAAAGAAAGAAAGAAAGATTTTCTTCGAAATT 2528
|||| | | ||| |||||||||||||||||||||| |||||||| |||||
Sbjct 2419 GTACCT------C---GAA-TTTGAGGCAAAAGAAAGAAAGA----TTTTCTTCAAAATT 2464
Query 2529 GGATGATAGGTTCATTTTTAACAGTTAA 2556
|||||||| ||||||||||||| |||||
Sbjct 2465 GGATGATATGTTCATTTTTAACGGTTAA 2492
Score = 152 bits (82), Expect = 1e-35
Identities = 97/104 (93%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 20 TTCTCAATTCTCGCGGGACATTTCGCGGGCGAGGGAAAAAGGAATCTACAAGTATTT-AA 78
|||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 1 TTCTCAATCCTCGCGGGACATTTATCGGGCGAGGGAAAAAGGAATCTACTAGTATTTAAA 60
Query 79 ACCTTTGCTGATTTAGAAACGCCTGAGTGCATCATCTTCGAGGA 122
||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 61 ACC-TTGCTGATTTAGAAACGCCTGAGTGCATTATCTTCGAGGA 103
Score = 86.1 bits (46), Expect = 1e-15
Identities = 75/87 (86%), Gaps = 9/87 (10%)
Strand=Plus/Plus
Query 2582 TATGAAAGTTTTTGTTTATTTCCATCTGGAGAGATGTTTTG------A--GTTATGGTTT 2633
|||||||||||||| ||||||||| || ||||||||||||| | ||| ||||||
Sbjct 2493 TATGAAAGTTTTTG-TTATTTCCAACTAGAGAGATGTTTTGACATAAATTGTTTTGGTTT 2551
Query 2634 CTGTAATCGATAGAGACCGGTTTAAGA 2660
|||||||||||||||||||||||||||
Sbjct 2552 CTGTAATCGATAGAGACCGGTTTAAGA 2578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104481542035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5