BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19520.1
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904932 jgi|Araly1|904932|Al_scaffold_0003_2060 1081 0.0
Ahg342087 jgi|Araly1|342087|fgenesh1_pg.C_scaffold_3001850 765 0.0
Ahg472658 jgi|Araly1|472658|fgenesh2_kg.1__2612__AT1G23970.1 183 2e-45
Ahg951695 jgi|Araly1|951695|scaffold_10800006.1 141 1e-32
Ahg936232 jgi|Araly1|936232|scaffold_500423.1 93.5 3e-18
> Ahg904932 jgi|Araly1|904932|Al_scaffold_0003_2060
Length=861
Score = 1081 bits (585), Expect = 0.0
Identities = 740/813 (91%), Gaps = 17/813 (2%)
Strand=Plus/Plus
Query 116 GGATTTTGT-AGATGGGCAGATGAAGTACTGGCGTCAAATAGCCGAATCCGATGGTTTCG 174
||||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 4 GGATTTT-TCAG-TGGGCAGATGAATTACTGGCGTCAAATAGCCGAATCCGATGGTTTCG 61
Query 175 ATATCGATGATGTTCCAGTACCAAGAGGAACCAGAGCTGGACTGTGGTCTGTCGACTGTA 234
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 62 ATATCAATGATGTTCCAGTACCAAGAGGAACCAGAGCTGGACTGTGGTCCGTCAACTGTC 121
Query 235 AACACCCACGTTTTAGGCTTAGGGCTTGTTTACCCAAGATTTATGCTATGGTTGGTCTTC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AACACCCACGTTTTAGGCTTAGGGCTTGTTTACCCAAGATTTATGCTATGGTTGGTCTTC 181
Query 295 ACCGTTACAATTTGCTCAGGGGGACAAACTTCGAGCACCTTGAGTTACTAAAATACAACG 354
||| |||||||||||||| ||||||||||||| |||||| ||| ||||| |||||||||
Sbjct 182 ACCATTACAATTTGCTCAAGGGGACAAACTTCCAGCACCATGACTTACTGAAATACAACA 241
Query 355 AGTCAATGAACTGTGTGTGCTCTTACTATATAACTTCGGTTGCAGTAGATCTTTCTAGCC 414
|||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 242 AGTCAATGAACTGTGTACGCTCTTACTACATAACTTCGGTTGCTGTAGATCTTTCTAGCC 301
Query 415 AGTTGCAGAAAACTTTTCAGATTCGAGTTGATGAAAAAAGTTTTGGAGATTTGGATTTGA 474
| || |||||||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 302 AATTTCAGAAAACCTTTCAGATTCGAGTTGATGAAAAAAGTTATGGGGATTTGGATTTGA 361
Query 475 CGGTCTCTGTTGCTAGACCTAATGATGAAGAGAAAGTGACCAC-CGAGAAGCGTTTCATA 533
|||||||| |||||||| ||| |||||||||||||||||||| | ||||||||||||||
Sbjct 362 CGGTCTCTATTGCTAGAATTAAAGATGAAGAGAAAGTGACCACAC-AGAAGCGTTTCATA 420
Query 534 CATCACTTTCATTGTGAAGCAG-CTGCGGATGATTTCTACAAAGGTGCATTGCCTGATTG 592
|||||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 421 CATCACTTTCATGGTGAAGCAGAC-GCGGATGATTTCTACCAAGGTGCATTGCCTGATTG 479
Query 593 GCCGTCAGTTGGTGATCTGAATAATCAAAAACGATTTTACATGGTGAA-GAAATGC-GAG 650
||| ||||||| |||| | ||| ||||||||||||||||| |||||| ||| | | ||
Sbjct 480 GCCATCAGTTGATGATTTTAATGATCAAAAACGATTTTACCTGGTGACTGAA-T-CAGAT 537
Query 651 TTGCAATCCAATGATTGGATCCGTCTATATTTGGAA-CTTGCAGTTGGTGTACGTTATCA 709
|| ||||||||||||||||| ||||| |||||| || ||||||||| ||| |||| | |
Sbjct 538 TTTCAATCCAATGATTGGATTCGTCTTTATTTG-AATCTTGCAGTTTGTGGACGTCGTAA 596
Query 710 GCA-GACTTCAGAGAGTGATCTGTCCAAGTTGCAGGTTCTGAAAGTGGCAATAGAAACTA 768
| | ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 597 G-ATGACTTCAGAGAATGATTTGTCCAAGTTGCAGATTCTGAAAGTGGCAATAGAAACTA 655
Query 769 AGGAAGAAGATGTGCAGCCACCGAATAGGAGACTCAAGTCCAAAAGT-CTACATGTCTAC 827
||||||||||| |||||||||||| ||||||||||||| |||||||| | | ||||||||
Sbjct 656 AGGAAGAAGATTTGCAGCCACCGAGTAGGAGACTCAAGGCCAAAAGTGC-ATATGTCTAC 714
Query 828 ATAACGTTTAAGGGCTTGGCCAAGGCTCCTATTGGTGATGAGATTGGTGAGCATGTTGAA 887
||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 715 ATAACATTTAAGGGCTTGGACAGGGCTCCGATTGGTGATGAGATTGGTGAGCATGTTGAA 774
Query 888 CGCAAAGCTATAGTTCGAAGAGTCATTGATGAG 920
||||||||||| ||| |||||||||||||||||
Sbjct 775 CGCAAAGCTATCGTTAGAAGAGTCATTGATGAG 807
> Ahg342087 jgi|Araly1|342087|fgenesh1_pg.C_scaffold_3001850
Length=963
Score = 765 bits (414), Expect = 0.0
Identities = 757/915 (83%), Gaps = 53/915 (6%)
Strand=Plus/Plus
Query 87 ATGACGTCTCTG-TCGGTAA-ATGATCGGAAGGATTTTGT-AGATGGGCAGATGAAGTAC 143
|||||||||| | | || || ||||||||||||| ||||| || |||||| ||| | |||
Sbjct 1 ATGACGTCTC-GTTTGG-AAGATGATCGGAAGGAGTTTGTCAG-TGGGCAAATGGATTAC 57
Query 144 TGGCGTCAAATAGCCGAATCCGATGGTTTCGATATCGATGATGTTCC-AGTACCAAG-AG 201
| ||||||| | ||| ||||||||||||| |||||||| |||| ||| || ||| || |
Sbjct 58 T-GCGTCAAGTGGCCAAATCCGATGGTTTTGATATCGACGATG-TCCAAGCACC-AGAAA 114
Query 202 GAACCAGAGCTGGACTGTGGT-CTGTCGACTGTAAACACCCACGTTTTAGGCTTAGG-GC 259
||||| | ||||||||| || || || ||||| || ||||||||||||||||||| |
Sbjct 115 GAACC--A-CTGGACTGTTGTCCT-TCAACTGTCTACGCCCACGTTTTAGGCTTAGGTG- 169
Query 260 TTGTTTACCCAAGATTTATGCTATGGTTGGTCTTCACCGTTACAATTTGCTCAGGGGGAC 319
| | || | |||| | ||||||||| || ||||| ||||||||| |||||| |||||
Sbjct 170 TCGGTTGCTCAAG--CTGTGCTATGGTGGGGCTTCATCGTTACAATATGCTCAATGGGAC 227
Query 320 AAACTTCGAGCACCT-TGAGTTACTAAAATACAACGA-GTCAATGAACTGTGTGTGCTCT 377
||| ||| || || || ||||| ||||||||| | ||||||||| ||||| ||||||
Sbjct 228 AAATTTCCAG-TTCTCTGCCTTACTGAAATACAAC-AGGTCAATGAATTGTGTCTGCTCT 285
Query 378 TACTATATAACTTCGGTTGCAGTAGATCTTTCTAGCCAGTTGCAGAAAACTTTTCAGATT 437
||||| || |||| || |||| |||||| || |||||| ||||||||||| |||||| ||
Sbjct 286 TACTACATGACTTTGGATGCACTAGATCCTTGTAGCCAATTGCAGAAAACCTTTCAGGTT 345
Query 438 CGAGTTGATGAAAAAAGTTTTGGAGATTTGGATTTGACGGTCTCTGTTGCTAGACCTAAT 497
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 346 CGAATTGATGAAAAAAGTTTTGGAGATTTGGATTTGACGGTCTCTATTGCTAGAATTAAA 405
Query 498 GATGAAGAGAAAGTGACCACCGAGAAGCGTTTCATACATCACTTTCATTGTGAAGCAG-C 556
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 406 GATGAAGAGAGAGTGACCACAAAGAAGCGTTTCATACATCACTTTCATGGTGAAGCAGAC 465
Query 557 TGCGGATGATTTCTACAAAGGTGCATTGCCTGATTGGCCGTCAGTTGGTGATCTGAATAA 616
|| |||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |
Sbjct 466 -GCTGATGATTTCTACAAAGGTCCATTGCCTGATTGGCCGTCAGTTGATGATTTGAATGA 524
Query 617 TCAAAAACGATTTTACATGGTGAA-GAAATGC-GAGTTGCAATCCAATGATTGGATCCGT 674
|| ||||||||||||| |||| || ||| | | ||||||| | ||||||||||||| |
Sbjct 525 TCGAAAACGATTTTACCTGGTAAATGAA-T-CAGAGTTGCTAGCCAATGATTGGATTCAC 582
Query 675 CTATATTTGGAACTTGCAGTTGGTGTAC-GTTATCAGCAGACTT--CAGAGAGTGATCT- 730
|| ||||||||||||||| || |||| | ||| | || || | | || | |||
Sbjct 583 CTGTATTTGGAACTTGCACTTTATGTAAAGG-ATCGGTGGATTTTTC-G-GACT--TCTA 637
Query 731 -GTCCAAGTTGCAGGTTCTGAAAGTGGCAATAGAAACTAAGGAAGAAGATGTGCAGCCAC 789
| ||||||||||| ||||||||||||| ||||||||||||||||| | || | ||||||
Sbjct 638 AGCCCAAGTTGCAGATTCTGAAAGTGGCGATAGAAACTAAGGAAGATG-TG-G-AGCCAC 694
Query 790 CGAATAGGAGACTCAA-GTCCAAAAGT-CTACATGT-CTACATAACGTTT-AAGGGCTTG 845
||||| |||||||| | || || ||| | | || | ||||||||| || |||||| ||
Sbjct 695 CGAATGGGAGACTCCATGTT-AAGAGTGC-A-ATTTTCTACATAAC-TTACAAGGGCATG 750
Query 846 GCCAAGGCTCCTATTGGTGATGAGATTGGTGAGCATGTTGAACGCAAAGCTATAGTTCGA 905
|||||| | || ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 751 GCCAAGCCCCCGATTGGTGATGAGATTGGTGAGGATGTTGAACGCAAAGCTATAGTTCGA 810
Query 906 AGAGTCATTGATGAGC-GTTCAGGACACTTGACGCTTCTCGGTGGGTTTTCCAATGCGAA 964
|||||||| ||||| | ||||| ||||||| || |||||||||||||| | ||||||
Sbjct 811 AGAGTCATCGATGAAAAGA-CAGGATACTTGACTCTCCTCGGTGGGTTTTCGATTGCGAA 869
Query 965 AAATGATTTGAATCA 979
|||||||||||||||
Sbjct 870 AAATGATTTGAATCA 884
> Ahg472658 jgi|Araly1|472658|fgenesh2_kg.1__2612__AT1G23970.1
Length=1265
Score = 183 bits (99), Expect = 2e-45
Identities = 315/412 (76%), Gaps = 43/412 (10%)
Strand=Plus/Plus
Query 558 GCGGATGATTTCTACAAAGGTGCATTGCCTGATTGGCCGTCAGTTGGTGATCTGAATAAT 617
||| ||| | ||| |||||||| ||||||||||||||| |||| || || | | ||| |
Sbjct 659 GCGTATGGTATCTTCAAAGGTGAATTGCCTGATTGGCCCTCAGATGATGCTTTCAATGA- 717
Query 618 C-AAAAACGATTTTACATGGTGAAGAAATGC-GAGTTGCAATCCAATGATTGGA-TCCGT 674
| ||||||||||||| |||| ||| ||| | |||| |||||||| |||||||| | | |
Sbjct 718 CGGAAAACGATTTTACCTGGTAAAGGAAT-CAGAGTGGCAATCCACTGATTGGATTTC-T 775
Query 675 CTATATTTGGAACTTGCAGTTGGT-GTAC-GTTA--TC-AGCA--G--A--CTTCAG-AG 722
| ||||||||||||| | || | || | || || | || | | | |||| ||
Sbjct 776 ATGTATTTGGAACTTGTAATTACTACAACTGATAGGTCGATCACTGAAACGCGTCAGAAG 835
Query 723 A--G-TGATCTGTCCAAGTTGCAGGTTCTGAAAGTGGCAATAGAAACTAAG-GAA-GAAG 777
| | | ||||||| ||||| || || |||||||||| ||||||||| | || ||||
Sbjct 836 ACCGAAGTTCTGTCCCAGTTGGAGATTGTGAAAGTGGCGATAGAAACT--GCTAATGAAG 893
Query 778 ATGTGCAGCCACCGAATAG-GAGACTCAAGTCCAAAAGT-CTACATGTCTACATAACGTT 835
||||| |||| |||||| | |||||||||| |||||||| | ||||||||||||||||||
Sbjct 894 ATGTGGAGCCGCCGAAT-GAGAGACTCAAGGCCAAAAGTGC-ACATGTCTACATAACGTT 951
Query 836 TAAGGGCTTGGCCA-AGGCTC---CTATT-GGTGA-T----GAGATTGGTGAGCATGTTG 885
|||||||||||| | || ||| | | || | | |||| ||||||||||||||
Sbjct 952 TAAGGGCTTGGC-AGAGCCTCGAGCCCCTCGGCGGGTTTTTGAGAATGGTGAGCATGTTG 1010
Query 886 AACGCAAAGCTATAGTTCGAAGAGTCATTGATGAGCGTTCAGGACACTTGAC 937
||||| ||||||||||| |||||||||| ||| | | ||||| |||||||
Sbjct 1011 AACGCCAAGCTATAGTTAGAAGAGTCATGGATCA-CA--CAGGATACTTGAC 1059
> Ahg951695 jgi|Araly1|951695|scaffold_10800006.1
Length=992
Score = 141 bits (76), Expect = 1e-32
Identities = 250/327 (76%), Gaps = 40/327 (12%)
Strand=Plus/Plus
Query 621 AAACGATTTTACATGG-TGAAGAAATGCGAGTTGCAATCCAATGATTGGATCCGTCTATA 679
|||||||||||||||| || || ||| |||||||||| || ||||||||||||||||||
Sbjct 550 AAACGATTTTACATGGTTG-AGGAATCCGAGTTGCAAGACACTGATTGGATCCGTCTATA 608
Query 680 TTTGGAACTTG-CAGTTGGTGTACGTTATCAG-CAGACTTCAGAG--AGTGATCTGTCCA 735
||||||||||| | ||| | | | || || | | || ||||| || || |||||||
Sbjct 609 TTTGGAACTTGTCCTTTGTTCAAAGG-AT-AGGCGG-CT-CAGAGCCAGCGACCTGTCCA 664
Query 736 AGTTGCAGGTTCTGAAAGTGGCAATAGAAACTAAG-GAAGAAGATGTGCAGCCACCGAAT 794
|||| || || |||||||||| ||||||||| | || ||||||||| |||| ||||||
Sbjct 665 TGTTGAAGATTGTGAAAGTGGCGGTAGAAACTA-GTGATGAAGATGTGGAGCCGCCGAAT 723
Query 795 -AGGAGACTCAA-GTCCAAAAGTCTACATGT--CTACATAACGTTTAAGGGCTTGGCCAA 850
|| |||||||| | | |||| | || || ||||||||| ||| | ||||||||
Sbjct 724 GAG-AGACTCAACG-CGAAAAC-CG-CAAGTTTCTACATAACTTTTCA---CTTGGCCA- 775
Query 851 GGCTCCTATTGGTGATGAGATT-GGTGAGCATGTTGAACGCAAAGCTATAGTTCGAAGAG 909
| | | || | | |||| || ||| |||||||||||| |||||||||| ||||||
Sbjct 776 ---T--T-T-GG-G--G-GATTAGG-GAGGATGTTGAACGCAGAGCTATAGTTAGAAGAG 823
Query 910 TCATTGATGAGCGTTCAGGACACTTGA 936
|| || | | ||| ||||| ||||||
Sbjct 824 TCCTT--TCA-CGTACAGGAAACTTGA 847
> Ahg936232 jgi|Araly1|936232|scaffold_500423.1
Length=1034
Score = 93.5 bits (50), Expect = 3e-18
Identities = 111/139 (80%), Gaps = 10/139 (7%)
Strand=Plus/Plus
Query 816 CTACATGTCTACATAACGTTTAAGGGCTTGGCCAAGGCTCCTATTGGTGATGAGATTGGT 875
||| |||||||||||||||||||||||||||||| |||| ||||||||| | |||||
Sbjct 701 CTA-ATGTCTACATAACGTTTAAGGGCTTGGCCATGGCTAGTATTGGTGA-GC--TTGGT 756
Query 876 GAGCATGTTGAACGCAAAGCTAT-AGTTCGAAGAGTCATTGA-TGAGCGTT-CAGGACAC 932
|||||||||| || |||| ||| | || |||||| | || | ||||| || | ||| |
Sbjct 757 GAGCATGTTGTTCGAAAAGTTATCA-TTAGAAGAGCC-TTCAATGAGC-TTACTGGATGC 813
Query 933 TTGACGCTTCTCGGTGGGT 951
|||| || || |||||||
Sbjct 814 ATGACTCTCCTGGGTGGGT 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119925412
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5