BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19540.1
Length=2134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929847 jgi|Araly1|929847|scaffold_302304.1 2433 0.0
Ahg923418 jgi|Araly1|923418|scaffold_104699.1 977 0.0
> Ahg929847 jgi|Araly1|929847|scaffold_302304.1
Length=1507
Score = 2433 bits (1317), Expect = 0.0
Identities = 1449/1512 (96%), Gaps = 12/1512 (1%)
Strand=Plus/Plus
Query 118 TGAAGCAAAAACAGAGGTTTTTGAAAATGGAGAAAAAACAAGGCTTTTTCTCTGCTCTCA 177
|||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TGAAGC-AAAACAGA-GTTTTTG-AAATGGAGAAAAAACAAGGCTTTTTCTCTGCTCTCA 57
Query 178 GACACGAAGTTGTGAGAGGTCTTTCGCCGTCACGATCCAGAGCAAGGTCTCGTTCCGTTA 237
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 GAGACGAAGTTGTGAGAGGTCTTTCGCCGTCACGATCCAGAGCAAGGTCTCGTTCCGTTA 117
Query 238 GTCCCGCTAGGTCTAGTTCACCCATGTCAGCTCTCACTTGGGGAAGAAAGAACTTAA-C- 295
|||||||| | |||| ||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 118 GTCCCGCTCGTTCTAATTCACCCATGTCAGCTCTCACTTGGGGGAGAAAGAACTTAACCG 177
Query 296 -TGGA---GGAGGCGGTGGTGGTGGTGGCGGAGGTTACTATTTAGCGCAACCAGAGCAGT 351
||| ||||| || ||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 178 GAGGAGCTGGAGGAGGCGGTGGTGGTGGCGGAGGATACTATTTGGCGCAACCGGAGCAGA 237
Query 352 TAATTGGGAGATCCGGAAGTTTGAGACCTGTAATGGAAGGTCCTGATCCAGATGAAGGAG 411
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TAATCGGGAGATCCGGGAGTTTGAGACCTGTAATGGAAGGTCCTGATCCAGATGAAGGAG 297
Query 412 GAGGAGGTGGTAATATAGGAGAATCTAAACGACTCGGGTCGGGTTTAGGTCACTGGGTTA 471
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GAGGAGGTGGTACTATAGGAGAATCTAAACGACTCGGGTCGGGTTTAGGTCACTGGGTTA 357
Query 472 AAGGGCAGCTGTCTCGTGCTCCGTCTGTTGCTGCGACGGCGGCTTATCGGAGAAATGATC 531
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 358 AAGGACAGCTGTCTCGTGCTCCGTCTGTTGCTGCCACGGCGGCTTACCGGAGAAATGATC 417
Query 532 TGAGACTTCTTCTTGGTGTAATGGGAGCTCCTCTTGCTCCTATTCATGTCTCTTCCTCTG 591
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGAGACTTCTTCTTGGAGTAATGGGAGCTCCTCTTGCTCCTATTCATGTCTCTTCCTCTG 477
Query 592 ATCCTTTGCCTCATCTTAGTATCAAAAACACTCCAATCGAAACATCATCTGCTCAGTATA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 478 ATCCTTTGCCTCATCTTAGTATCAAAAACACTCCAATCGAAACATCATCTGCTCAATATA 537
Query 652 TTCTTCAACAGTACACTGCAGCTTCTGGTGGTCAGAAGCTACAAAACTCCATTAAAAACG 711
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 538 TTCTTCAACAGTTCACTGCAGCTTCCGGTGGTCAGAAGCTACAAAACTCCATTAAAAACG 597
Query 712 CTTATGCGATGGGGAAGCTCAAGATGATTACTTCAGAGCTTGAAACTGCTACAAGAACCG 771
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 598 CTTATGCGATGGGGAAGCTCAAGATGATTACTTCTGAGCTTGAAACCGCTACAAGAACTG 657
Query 772 TTAGGAATCGAAACCCATCTAAGGCTGAGACTGGAGGTTTTGTTCTTTGGCAGATGAATC 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTAGGAATCGAAACCCATCTAAGGCTGAGACTGGAGGTTTTGTTCTTTGGCAGATGAATC 717
Query 832 CAGACATGTGGTATGTTGAGCTTGCTGTTGGGGGTAGTAAGGTTCGTGCTGGCTGCAATG 891
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 718 CAGACATGTGGTACGTTGAGCTTGCTGTTGGTGGTAGTAAGGTTCGTGCTGGCTGTAACG 777
Query 892 GCAAGCTTGTATGGAGACACACTCCTTGGCTCGGATCTCATACTGCTAAAGGACCTGTCA 951
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 778 GCAAGCTTGTATGGAGACACACTCCTTGGCTCGGATCTCATACTGCTAAAGGGCCTGTCA 837
Query 952 GACCTCTCCGCCGTGGACTTCAGGGACTAGATCCGAGAACAACTGCTGCAATGTTTGCGG 1011
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GGCCTCTCCGCCGTGGACTTCAGGGACTAGATCCGAGAACAACTGCTGCAATGTTTGCGG 897
Query 1012 AAGCGAAGTGTATAGGAGAGAAGAAGGTGAATGGTGAAGATTGCTTCATTTTGAAGTTAT 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 898 AAGCGAAGTGTATAGGAGAGAAGAAGGTGAATGGTGAAGATTGCTTCATTTTGAAGCTAT 957
Query 1072 GCACTGACCCTGAAACACTAAAAGCGAGGAGCGAAGGACCGGCTGAGATCATTAGGCATG 1131
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 958 GCACTGACCCTGAAACACTAAAGGCGAGGAGCGAAGGACCGGCTGAGATCATAAGGCATG 1017
Query 1132 TCCTCTTTGGCTACTTCAGTCAGAAAACAGGGCTCTTGGTTCACATTGAGGATTCACATT 1191
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 TCCTCTTTGGCTACTTCAGTCAGAAAACAGGACTCTTGGTTCACATTGAGGATTCACATT 1077
Query 1192 TGACCCGGATTCAATCTAACGGTGGAGAGACTGTTTTCTGGGAGACCACATACAACTCGT 1251
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TGACCCGGATCCAATCCAACGGTGGAGAGACTGTTTTCTGGGAGACCACATACAACTCGT 1137
Query 1252 CCCTAGACGATTACCGTCAGGTCGAAGGAATCATGATTGCTCACTCGGGACATTCAGTTG 1311
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1138 CCCTAGACGATTACCGTCAGGTCGAAGGGATCATGATTGCTCACTCAGGACATTCAGTTG 1197
Query 1312 TGACACTATTCAGATTTGGGGAAGTGGCGACGAGCCATACGAGGACAAAGATGGAAGAAA 1371
|||| || |||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1198 TGACGCTTTTCAGATTTGGGGAAGTGGCGATGAGCCACACGAGGACAAAGATGGAAGAAA 1257
Query 1372 GCTGGACGATTGAGGAAGTTGCGTTTAACGTTCCTGGTCTGTCTCTCGATTGCTTTATAC 1431
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1258 GCTGGACGATTGAGGAAGTTGCGTTTAACGTTCCCGGTCTATCTCTCGATTGCTTTATAC 1317
Query 1432 CACCAGCTGATCTTAAGACCGGTTCTTTAACCGAATCCTGCGAGTACCCACAAGAGGAAA 1491
||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct 1318 CACCAGCTGATCTAAAGTCCAGTTCTTTAACCGATTCCTGCGAGTACCCACAAGAGGAAA 1377
Query 1492 GAGGCAAGAACAACACACTCGCATTGTCTGCAGCTCACAGGGCCAAAGTTGCAGCCTTGG 1551
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAGGGAAGAACAACACACTCGCATTGTCTGCAGCTCACAGGGCCAAAGTTGCAGCCTTGG 1437
Query 1552 AGAACGGGAGCTTGGAAGATCACCGCCCGGTTTGGCATA-CTGATGTCTAACGCTTAAAG 1610
||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1438 AGAACGGGAGCTTTGAAGATCACCGCCCGGTTTGGCATAGC-GATGTCTAACGCTTAAA- 1495
Query 1611 AGAGAGCTTATG 1622
||||||||||||
Sbjct 1496 AGAGAGCTTATG 1507
> Ahg923418 jgi|Araly1|923418|scaffold_104699.1
Length=1525
Score = 977 bits (529), Expect = 0.0
Identities = 1043/1287 (81%), Gaps = 51/1287 (4%)
Strand=Plus/Plus
Query 337 CGCAACCAGAGCAGTTAATTGGGAGATCCGGAAGTTTGAGACCTGTAATGGAAGGTCCTG 396
|||||||||||| ||| |||||||||||| | ||||| ||||| ||||||||||||||||
Sbjct 243 CGCAACCAGAGCCGTTGATTGGGAGATCCAGTAGTTTAAGACCAGTAATGGAAGGTCCTG 302
Query 397 ATCCAGATGAAGGAGGAGGAGGTGGTAATATAGGAGAATCTAAACGACTCGGGTCGGGTT 456
||||||| || || || | | | ||| || || |||||||||||||||||||
Sbjct 303 ATCCAGA-CAA--CGG-TGAAAT--TTCTGGAGGGGATTCGAAACGACTCGGGTCGGGTT 356
Query 457 TAGGTCACTGGGTTAAAGGGCAGCT-GTCTCGTGCTCCGTCTGTTG-CTGCGACGGCGGC 514
|| |||| ||||| ||||| ||| | ||| ||||||||||| | || || | ||| |||
Sbjct 357 TAAGTCATTGGGTCAAAGGTCAG-TGGTCACGTGCTCCGTCCG-TGACTTCAACGCCGGT 414
Query 515 TTATCGGAGAAATGATCTGAGACTTCTTCTTGGTGTAATGGGAGCTCCTCTTGCTCCTAT 574
||||||||| |||| || | |||||||| || || |||||||||||||| ||||| ||
Sbjct 415 TTATCGGAGGTCTGATTTGCGGCTTCTTCTCGGCGTTATGGGAGCTCCTCTCGCTCCCAT 474
Query 575 TCATGTCTCTTCCTCTGATCCT-TTGCCTCATCTTAGTATCAAAAACACTCCAATCGAAA 633
| | ||||||||||| ||| | || | |||||| | |||| | || |||| || ||||
Sbjct 475 TAACGTCTCTTCCTCCAATCATCTT-CTTCATCTCACCATCAGAGACTCTCCCATTGAAA 533
Query 634 CATCATCTGCTCAGTATATTCTT-CAACAGTACACTGCAGCTTCTGGTGGTCAGAAGCTA 692
|| ||||||| || || ||| || ||||||||||| ||||||| |||||| || ||| ||
Sbjct 534 CAACATCTGCACAATACATT-TTGCAACAGTACACGGCAGCTTGTGGTGGCCACAAGTTA 592
Query 693 CAAAACTCCATTAAAAACGCTTATGCGATGGGGAAGCTCAAGATGATTACTTCAGAGCTT 752
|||||| ||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 593 CAAAACACCATTAAGAACGCTTATGCTATGGGTAAGCTCAAGATGATAACTTCAGAGCTT 652
Query 753 GAAACTGCTACAAGAACCGTTAGGAATCGAAACCCAT-CTAAGGCTGAGACTGGAGGTTT 811
|||||| | ||| | || ||||| || |||||| | | | ||| | || ||||| || ||
Sbjct 653 GAAACTCCCACAGGCACTGTTAGAAACCGAAACTC-TGCAAAGTCGGAAACTGGTGGGTT 711
Query 812 TGTTCTTTGGCAGATGAATCCAGACATGTGGTATGTTGAGCT-TGCTGTTGGGGGTAGTA 870
|||||| |||||||||||||| || |||||||| |||||||| | ||||||| |||||||
Sbjct 712 TGTTCTCTGGCAGATGAATCCTGATATGTGGTACGTTGAGCTCT-CTGTTGGTGGTAGTA 770
Query 871 AGGTTCGTGCTGGCTGCAATGGCAAGCTTGTATGGAGACACACTCCTTGGCTCGGATCTC 930
| ||||||||||||||||||||||||||||| ||| |||| ||||||||||| || ||||
Sbjct 771 AAGTTCGTGCTGGCTGCAATGGCAAGCTTGTTTGGCGACATACTCCTTGGCTTGGTTCTC 830
Query 931 ATACTGCTAAAGGACCTGTCAGACCTCTCCGCCGTGGACTTCAGGGACTAGATCCGAGAA 990
| |||||||||||||| ||||| ||||| || |||| |||||||||||| || |||||||
Sbjct 831 ACACTGCTAAAGGACCCGTCAGGCCTCTTCGTCGTGCACTTCAGGGACTTGACCCGAGAA 890
Query 991 CAACTGCTGCAATGTTTGCGGAAGCGAAGTGTATAGGAGAGAAGAAGGTGAATGGTGAAG 1050
| ||||| | |||||||| ||| |||| ||| | ||||||| |||||||||||||||||
Sbjct 891 CTACTGCCACTATGTTTGCTGAATCGAAATGTGTTGGAGAGAGGAAGGTGAATGGTGAAG 950
Query 1051 ATTGCTTCATTTTGAAGTTATGCACTGACCCTGAAACACTAAAAGCGAGGAGCGAAGGAC 1110
|||| |||||| ||||| |||| ||||| |||||||| |||| |||||||| |||||||
Sbjct 951 ATTGTTTCATTCTGAAGCTATGTACTGATCCTGAAACGCTAAGGGCGAGGAGTGAAGGAC 1010
Query 1111 CGGCTGAGATCATTAGGCATGTCCTCTTTGGCTACTTCAGTCAGAA-AACAGGGCTCTTG 1169
| || |||||| | || ||| |||| ||||| |||||||| || || |||||| || ||
Sbjct 1011 CAGCGGAGATCGTAAGACATATCCTTTTTGGTTACTTCAGCCA-AAGAACAGGACTTTTA 1069
Query 1170 GTTCACATTGAGGATTCACATTTGACCCGGATTCAATCTAACGGTGGAGA-GACTGTTT- 1227
| ||| || |||||||| || |||||||| || ||||| |||| ||| || | ||||||
Sbjct 1070 GCTCAAATCGAGGATTCGCAGTTGACCCGTATCCAATCAAACGATGGTGATG-CTGTTTA 1128
Query 1228 TCTGGGAGACCAC-ATACAACTCGTCCCTAGACGATTACCGTC-AGGTCGAAGGAATCAT 1285
| ||||||||||| || ||| ||||| |||||||||||| | || ||||||| |||||
Sbjct 1129 T-TGGGAGACCACGAT-CAATTCGTCTCTAGACGATTACAAACCAG-TCGAAGGGATCAT 1185
Query 1286 GATTGCTCACTCGGGACATTCAGTTGTGACACTATTCAGATTTGGGGAAGTGGCGACGAG 1345
|||||||||||| |||| || ||||| || || ||||||||||||||||| || | |||
Sbjct 1186 GATTGCTCACTCTGGACGCTCTGTTGTTACCCTCTTCAGATTTGGGGAAGTCGCAATGAG 1245
Query 1346 CCATACGAGGACAAAGATGGAAGAAAGCTGGACGATTGAGGAAGTTGCGTTTA-ACGTTC 1404
||| || |||||||||||||| ||||| ||||| ||||| |||||||| ||| | ||||
Sbjct 1246 CCACACTAGGACAAAGATGGAGGAAAGATGGACCATTGAAGAAGTTGC-TTTCGATGTTC 1304
Query 1405 CTGGTCTGTCTCTCGATTGCTTTATACCACCAGCTGATCTTAAGACCGGTTCTTTAACCG 1464
||||||||||||| ||||||||||| ||||| |||||||||| | | |||| ||||| |
Sbjct 1305 CTGGTCTGTCTCTAGATTGCTTTATTCCACCCGCTGATCTTAGGTCTAGTTCGTTAACTG 1364
Query 1465 AATCCTGCGAGTACCCA---CAAGAGGA-AAGAGGCAAGAACAACACACTCGCATT-GTC 1519
|| ||| ||||||| | || ||||| || ||| |||| | | ||||||| | |
Sbjct 1365 AAGCCTCCGAGTACTCGGGTCACGAGGAGAA-AGGGAAGAGTT-CG-A-TCGCATTAG-C 1419
Query 1520 TGCA------GCTCACAGGGCCAAAGTTGCAGCCTTGGAGAACGGGAGCTTGGA-AGATC 1572
|||| ||||| || || |||||||||||||||||||| || ||||| || | ||
Sbjct 1420 TGCAACAACAGCTCATAGAGCTAAAGTTGCAGCCTTGGAGAAAGGAAGCTTTGACA-ATG 1478
Query 1573 ACCGCCCGGTTTGGCATACTGATGTCT 1599
| | | ||||||||||| ||||||||
Sbjct 1479 ATC-C--GGTTTGGCATATTGATGTCT 1502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80294236460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5