BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19550.1
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479468 jgi|Araly1|479468|fgenesh2_kg.3__2169__AT3G19550.1 699 0.0
> Ahg479468 jgi|Araly1|479468|fgenesh2_kg.3__2169__AT3G19550.1
Length=611
Score = 699 bits (378), Expect = 0.0
Identities = 451/484 (93%), Gaps = 14/484 (3%)
Strand=Plus/Plus
Query 115 TTATACACAGTTGATGGGAAGAACTGGGATCGCCAAAGCACCAAAGCTGCTGTTAAGGAG 174
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 73 TTATACATAGTTGATGGGAAGAACTGAGATCGCCAAAGCACCAAAGCTGCTGTTAAGGAG 132
Query 175 TTGGAAGCAATTTCAAGGGCGAGCAGGGATAAGCAGCAAAGCTGCAAAATCAAACCCGAT 234
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 133 TTGGAAGCAATTTCAAGGGCGAGCAGGGATAAGCAGCAAAGCTGCAAAACCAAACCCGAT 192
Query 235 GATCG-TCGACTACTTTGAAGATATTTCCGACCATAATCTCAAATTTAGCGGCGAAGAGG 293
||| | || ||||||||||||||||||||||||| |||||||| | | ||||| ||||||
Sbjct 193 GAT-GATCAACTACTTTGAAGATATTTCCGACCACAATCTCAACTGTGGCGGCAAAGAGG 251
Query 294 AGAGCTGGGTCCCACACCCACGCACCGGAATATTCTTTCCGCCGGGACAAGAGTCGGTGA 353
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AGAGCTGGGTCCCACACCCCCGCACCGGAATATTCTTTCCGCCGGGACAAGAGTCGGTGA 311
Query 354 TGGAAGATGTCCCTAATGGTGCTGCCTCCTTCGACATGACGTTTTGGCTTAGGAACGTTG 413
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 TGGAAGATGTCCCTAACGGTGCTGCCTCCTTCGACATGACGTTTTGGCTTAGGAACGTTG 371
Query 414 ACGGTGTTGATAAACCTGATCCTGATCTTCATCATCTTCCTTATTAATTA-T-A-A-ACA 469
|||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 372 ACGGTGTTGATAAACCTGATCCTGATCTTCATCATCTTCCTTATTAATTAATTAGAGACA 431
Query 470 AAATTAATATGGTATTGCTTATCTTATGATTGTTTCATTGAGAAATGAAATCGTCATAAG 529
||||||||||| |||| || |||||||||||| ||||||||| ||||||| ||||||||
Sbjct 432 AAATTAATATGTTATTACTAATCTTATGATTGAGTCATTGAGAGATGAAAT-GTCATAAG 490
Query 530 GGGACACTATATACTACATGTAA-------CTATATTAAATAATCTCAAGGAAATGAGGA 582
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||
Sbjct 491 GGGACACTATATACTACATGTAAGATGTAACTATATTGAATAATCTCAAGGAAATGGGGA 550
Query 583 ATGG 586
||||
Sbjct 551 ATGG 554
Score = 97.1 bits (52), Expect = 1e-19
Identities = 70/78 (90%), Gaps = 4/78 (5%)
Strand=Plus/Plus
Query 12 TTATAGATTGATAGAAATATACTCGTACTAATATCAATATATAAATACTCTGATTCCATA 71
||| ||| ||||||||||||||||||||||||||||||| | | |||||||||| ||||
Sbjct 1 TTAGAGACTGATAGAAATATACTCGTACTAATATCAATA-A-A--TACTCTGATTTCATA 56
Query 72 TTAACATAATAAAGTATT 89
|| |||||||||||||||
Sbjct 57 TTTACATAATAAAGTATT 74
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5