BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19553.1
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479469 jgi|Araly1|479469|fgenesh2_kg.3__2170__AT3G19553.1 2785 0.0
Ahg945403 jgi|Araly1|945403|scaffold_701632.1 183 3e-45
> Ahg479469 jgi|Araly1|479469|fgenesh2_kg.3__2170__AT3G19553.1
Length=1915
Score = 2785 bits (1508), Expect = 0.0
Identities = 1801/1934 (93%), Gaps = 54/1934 (3%)
Strand=Plus/Plus
Query 6 CAACTATACAATGATATTTTTGATCAAACGTCATTTTCCAATCTTTGAATCTGAGATGAT 65
||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 1 CAATTATACAATGATATTTTTGATCAAACGTCA-CATCCTCTCTTTGAATCTGAGATGTT 59
Query 66 AACTTGTTCAGCTTAATCTTTCCAGTCAATTTCATCT-C---CT-T-C--CAA-TTTTGA 116
|||||||||||||||||||||||| |||||||||||| | || | | ||| ||||
Sbjct 60 AACTTGTTCAGCTTAATCTTTCCAATCAATTTCATCTCCTTTCTCTGCATCAAGTTTT-- 117
Query 117 AGGGTTCATCAGAG--A-A-AGAGAGAGCCATTCAGAGATCCATTGTACCAAGCTCACTT 172
|||||||||||||| | | |||||||| |||||||||||||||||||||||| ||| |
Sbjct 118 AGGGTTCATCAGAGAAAGAGAGAGAGAGAGATTCAGAGATCCATTGTACCAAGCCCACAT 177
Query 173 CGATCTACAGAATCACCGAGA-----G-CTCTCTGTCTCTCT--GTCGGTGATATTTGTT 224
||||||||||||||||||||| | |||||| ||||||| ||||||| ||||||||
Sbjct 178 CGATCTACAGAATCACCGAGAGCTCTGTCTCTCTCTCTCTCTGAGTCGGTGGTATTTGTT 237
Query 225 TGATGGGTGAAGAAGAGACAATCGTAAACGATGAAAACAGCTCTAAG-C--CAAAACCAA 281
|||||||| |||||||||||||| |||||||||||||||||| || | | |||||||
Sbjct 238 TGATGGGT---GAAGAGACAATCGTGAACGATGAAAACAGCTCTGAGACAACTAAACCAA 294
Query 282 GTCCAAAGCTGACACTGTTGCCTCTGGTATTTCTCATCTTCTATGAAGTTTCTGGTGGAC 341
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 295 GTCCAAAACTGACACTATTGCCTCTAGTATTTCTCATCTTCTATGAAGTTTCTGGTGGAC 354
Query 342 CTTTTGGTGTGGAGGATTCTGTGAAATCAGGTGGTGGTCCTCTCTTAGCCCTTTTAGGCT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CTTTTGGTGTGGAGGATTCTGTGAAATCAGGTGGTGGTCCTCTCTTAGCCCTTTTAGGCT 414
Query 402 TCTTGATTTTCCCTCTGATTTGGAGTATACCCGAAGCTCTGGTCACAGCAGAACTCGCTA 461
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |
Sbjct 415 TCTTGATTTTCCCTCTGATTTGGAGTATACCCGAAGCTCTGGTCACTGCAGAGCTTGCCA 474
Query 462 CAAGCTTCCCTGAGAATGGTGGCTACGTGGTTTGGATCTCTTCAGCTTTTGGTCCATTTT 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 475 CAAGCTTCCCTGAGAATGGTGGCTACGTGGTTTGGATCTCTTCAGCTTTTGGTCCGTTTT 534
Query 522 GGGGATTCCAAGAAGGGTTTTGGAAATGGTTCAGTGGTGTTATGGACAATGCTTTATACC 581
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 535 GGGGTTTCCAAGAAGGGTTTTGGAAATGGTTTAGTGGTGTTATGGACAATGCTTTATACC 594
Query 582 CTGTATTGTTTCTTGATTACTTGAAACATTCGTTCCCTGTTTTGGATCATGTAGCAGCTC 641
||||||||||||||||||||||||||||||| ||||| |||||| |||||||||| ||||
Sbjct 595 CTGTATTGTTTCTTGATTACTTGAAACATTCTTTCCCGGTTTTGAATCATGTAGCTGCTC 654
Query 642 GTGTTCCTGCTCTGTTGGTGATTACATTCTCACTGACGTATTTGAACTATAGAGGATTGC 701
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 655 GTGTTCCTGCTCTGTTGGTAATCACATTCTCACTGACGTATTTGAACTATAGAGGATTGC 714
Query 702 ATATTGTTGGTTTTTCAGCTGTTGTGCTTGCGGTTTTCTCGCTCTGTCCTTTCGTTGTTA 761
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 715 ATATTGTTGGTTTTTCAGCTGTTGTGCTTGCGGTTTTCTCGCTCTGTCCTTTCATTGTTA 774
Query 762 TGGCTTTGCTTGCGGTTCCTA-ATATCAGGCCTAAGCGTTGGTTGTTTGTTGATACTCAG 820
|||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 775 TGGCTTTGCTTGCGGTTCCTCGA-ATCAGGCCTAAGCGTTGGTTGTTTGTGGATACTCAG 833
Query 821 AAGATTAATTGGAGAGGCTACTTCAATACTATGTTTTGGAATCTGAACTATTGGGACAAA 880
||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct 834 AAGATTAATTGGAGAGGGTACTTCAATACCATGTTTTGGAATTTGAACTATTGGGACAAA 893
Query 881 GCTAGTACTCTTGCAGGAGAAGTTGATAGACCCGGGAAGACGTTTCCAAAGGCTTTGTTT 940
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 894 GCTAGTACTCTTGCAGGAGAAGTTGACAGACCCGGGAAGACGTTTCCAAAGGCTTTATTT 953
Query 941 GGAGCGGTTTTGTTGGTCATGGGGTCATATTTGATTCCCCTCATGGCAGGGACTGGAGCT 1000
||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 954 GGAGCTGTTTTGTTGGTCATGGGGTCCTATTTGATTCCGCTGATGGCAGGGACTGGAGCT 1013
Query 1001 TTAAGCTCATCCACTTCTGGAGAATGGAGTGATGGGTATTTTGCTGAGGTTGGAATGCTT 1060
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTAAGCTCATCCTCTTCTGGAGAGTGGAGTGATGGGTATTTTGCTGAGGTTGGAATGCTT 1073
Query 1061 ATTGGAGGTGTCTGGCTCAAGGGATGGATACAAGCTGCTGCTGCAATGTCTAATCTTGGA 1120
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1074 ATTGGAGGTGTTTGGCTCAAGGGATGGATACAAGCTGCTGCTGCAATGTCAAATCTTGGT 1133
Query 1121 TTGTTTGAAGCTGAAATGAGTAGTGATGCTTTTCAGCTTCTCGGTATGAGTGAGATTGGG 1180
||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1134 TTGTTTGAAGCCGAGATGAGTAGTGATGCATTTCAGCTTCTCGGTATGAGTGAGATCGGG 1193
Query 1181 ATGCTCCCTGCATTTTTTGCTCAGAGGTCAAAGTATGGGACACCAACAATCAGTATTCTG 1240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1194 ATGCTCCCTGCATTTTTTGCTCAGAGGTCAAAGTATGGGACACCAACCATCAGTATTCTT 1253
Query 1241 TGCTCAGCTACAGGAGTCATATTCTTGTCATGGATGAGCTTTCAAGAGATCATAGAGTTT 1300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1254 TGCTCAGCTACAGGAGTCATATTCCTGTCATGGATGAGCTTTCAAGAGATCATAGAGTTT 1313
Query 1301 CTGAATTTCTTGTACGCATTAGGAATGCTTCTTGAGTTCGCAGCTTTTGTCAAACTAAGG 1360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1314 CTGAATTTCTTGTACGCATTAGGAATGCTTCTTGAATTCGCAGCTTTTGTCAAACTAAGG 1373
Query 1361 ATCAAGAAACCGGATCTTCACCGACCTTATAGAGTTCCCTTAAACACCTTTGGAGTTTCA 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1374 ATCAAGAAACCGGATCTTCACCGACCTTATAGAGTTCCCTTAAACACCTTTGGAGTTGCA 1433
Query 1421 ATGCTGTGCCTGCCTCCTTCTTTGCTTGTCATTCTTGTGATGGTTTTGGCCGCCCCGAAG 1480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1434 ATGCTGTGCCTGCCTCCTTCTTTGCTTGTCATTCTTGTGATGGTTTTGGCCGCCCCAAAG 1493
Query 1481 ACATTTCTGATCAGCGGTGTGATCATAGTTCTTGGATTCTGCTTGTACCCATTCTTAACA 1540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1494 ACATTTCTGATCAGCGGTGTGATCATAGTTCTCGGATTCTGCTTGTACCCATTCTTAACA 1553
Query 1541 CTCGTTAAGGAGAAGCAGTGGGCGAGATTTATCCCGGAGGAAACAAGACCAGTTTCAGGA 1600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1554 CTCGTTAAGGAGAAGCAGTGGGCGACATTTATCCCGGAGGAAACAAGACCAGTTTCAGGA 1613
Query 1601 GTTTCATCAGAGTCACAGTTGGATGAAGAACATGGAGATGAGTCTGCTGCTAGCCTTCTC 1660
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1614 GTTCCATCAGAGTCACAGTTGGATGAAGAACATGGAGATGAGTCTGCTGCTAGTCTTCTC 1673
Query 1661 CCATGATCCCCACCAACAAAAGTGTGTGATTAATTTATTGCACAAGTCTTTAAAAGCGCA 1720
|||||||| |||||||||||||| |||||||| || ||||||||||||||| || ||
Sbjct 1674 CCATGATCTCCACCAACAAAAGTCTGTGATTA-TT----GCACAAGTCTTTAAAGGCTCA 1728
Query 1721 TGGTAAGTCATGTACAGTTGTAATTAAGAATGAAATTTATTTATGTCTTGTTCAGCTTTG 1780
|||||||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1729 TGGTAAGTTTTGTACAGTTGTAA----GAATGAAATTTATTT--GTCTTGTTCAGCTTCC 1782
Query 1781 AATTATAGTACAGAAAACAGAACAAAAAGAGTGTAGAAGCA--GGAGGGTTTGTACCTGA 1838
|||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||
Sbjct 1783 AATTATAGTACAGAAAACAGAACAAAAA-AGTGTAGAAGCATAGGAGGGTATGTATTTGA 1841
Query 1839 GTCAAGTGTCCAAAC-A-T------GTATTGCTTATGGTTATAATTTGTAAAAACGTGAG 1890
|||||||||| |||| | | ||||||||| |||||||||| ||||||||| |||
Sbjct 1842 GTCAAGTGTCTAAACGACTAAACAAGTATTGCTTGTGGTTATAATGTGTAAAAACCTGAA 1901
Query 1891 TAAATTCATTCAAT 1904
||||||||||||||
Sbjct 1902 TAAATTCATTCAAT 1915
> Ahg945403 jgi|Araly1|945403|scaffold_701632.1
Length=403
Score = 183 bits (99), Expect = 3e-45
Identities = 103/105 (98%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1450 CATTCTTGTGATGGTTTTGGCCGCCCCGAAGACATTTCTGATCAGCGGTGTGATCATAGT 1509
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 269 CATTCTGGTGATGGTTTTGGCCGCCCCGAAGACATTTCTGATCAGCGGTGTGATCATGGT 328
Query 1510 TCTTGGATTCTGCTTGTACCCATTCTTAACACTCGTTAAGGAGAA 1554
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 TCTTGGATTCTGCTTGTACCCATTCTTAACACTCGTTAAGGAGAA 373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71838202070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5