BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19560.1
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904936 jgi|Araly1|904936|Al_scaffold_0003_2064 289 4e-77
Ahg929851 jgi|Araly1|929851|scaffold_302308.1 198 7e-50
Ahg479142 jgi|Araly1|479142|fgenesh2_kg.3__1843__AT3G16740.1 122 4e-27
Ahg923074 jgi|Araly1|923074|scaffold_104355.1 93.5 3e-18
Ahg930681 jgi|Araly1|930681|scaffold_303138.1 80.5 3e-14
Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1 63.9 3e-09
> Ahg904936 jgi|Araly1|904936|Al_scaffold_0003_2064
Length=918
Score = 289 bits (156), Expect = 4e-77
Identities = 214/242 (88%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 188 ATGACTATGATGTCCGATATCTCGCAGGATTTGTTAGAGGAGATTCTCTCTAGGGTTCCA 247
||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGACTATGATGTACGATTTCTCGCAGGATTTGCTAGAGGAGATTCTCTCTAGGGTTCCA 60
Query 248 ATAACATCTCTGAGAGCAGTGAAATCTACTTGCAAACGATGGAAGGATTTATTGAATGAT 307
||||||||||||||||||||| ||| ||||||||||||||||| ||| || | || |||
Sbjct 61 GTAACATCTCTGAGAGCAGTGAGATCAACTTGCAAACGATGGAACGATATAATCAAAGAT 120
Query 308 CCGAGCTTTTCAAAGAAGTATGGTGGTAAACGAGACAACGAGTTTCTGGCGATCATGAC- 366
|||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |
Sbjct 121 CCGAGCTTTTCAAAGAAGTATGGTGGTAAAGGAGCCAACGAGTTTCTGGTAATCATG-CT 179
Query 367 GAGTGGTAGTAGGGCTTCTTTAATGAGCGTAAATCTCCATGGACCTCGT-GACAATAAAG 425
|| || | |||||||| |||||||||||| ||||| ||||| | || | ||||||||||
Sbjct 180 GAATGATTTTAGGGCTTGTTTAATGAGCGTCAATCTTCATGG-CATCCTAGACAATAAAG 238
Query 426 AC 427
||
Sbjct 239 AC 240
Score = 283 bits (153), Expect = 2e-75
Identities = 299/365 (82%), Gaps = 28/365 (8%)
Strand=Plus/Plus
Query 485 GTGTTTCATTGTGATGG--T-T-TATTGTTATGCATCACCAATGAGGATAATACTAGGCT 540
|||| |||||||||||| | | ||||||||||||||||||||||||| |||||||||||
Sbjct 243 GTGTATCATTGTGATGGCTTATATATTGTTATGCATCACCAATGAGGACAATACTAGGCT 302
Query 541 CGTGGTATGGAACCCGTATTTGGCACAAACCAGGTGCATCCAACCCATCGACAAATTCTA 600
||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||| |
Sbjct 303 CGTGGTATGGAACCCGTATTTGGAACAAACCAGGTGGATCCAACCCATCAACAAATTTTG 362
Query 601 CATATATGATTGGTATTGTTTGGGCTACGA---CAAGGACAAAAACCACAAAATTTTAGT 657
|| || |||| | |||||| |||||||||| ||| |||| |||||||||||||| |
Sbjct 363 CAAATTTGATCGTTATTGTATGGGCTACGATAACAATAACAACAACCACAAAATTTT-GA 421
Query 658 GGTTTATTCCCCTATG-TTTGGCCGCATTGAGTATGAAATCTACAGTTTTTTGTCTAAAT 716
|||| ||| || | |||||| |||||||||||||||||||| |||| ||||||| |
Sbjct 422 GGTTC-TTCA--TAAGGTTTGGCTACATTGAGTATGAAATCTACAATTTTATGTCTAATT 478
Query 717 CATGGA-TAGTTCTT-AGTTTCC-CTACCGATTGGCAGATATCGCG-TGAT-GAATGTC- 770
|||||| | || | | | | | ||||| ||||| | || |||| | || | | |||
Sbjct 479 CATGGAGT-GTCCCTCA-TA-CAACTACCAATTGGGATATCTCGCCAT-ATTGCA-GTCG 533
Query 771 ---TGTCTC-T-GAAAGGAAATACTTACTTTATTGCTTATaaaaaaaTGGAAGTGGAAGA 825
|||||| | ||||||||| ||||||||||||||| | |||||||||||||||||| |
Sbjct 534 GGGTGTCTCCTTGAAAGGAAACACTTACTTTATTGCTCAGAAAAAAATGGAAGTGGAACA 593
Query 826 AGTAG 830
|||||
Sbjct 594 AGTAG 598
> Ahg929851 jgi|Araly1|929851|scaffold_302308.1
Length=680
Score = 198 bits (107), Expect = 7e-50
Identities = 231/289 (80%), Gaps = 16/289 (6%)
Strand=Plus/Plus
Query 777 TGAAAGGAAATACTTACTTTATTGCTTAT-aaaaaaaTGGAAGTGGA-A-GAAGTAGGGT 833
|||| |||||||||||||||| ||| | | | ||| | || ||| | |||| | ||
Sbjct 257 TGAAGGGAAATACTTACTTTACTGC-TGTGGAGAAACT-CAA-AGGACAGGAAG-A-GG- 310
Query 834 TTCAAGAAT-T--TTTACTCTGTTTTGATTTTACAA-ATGAGAGATTTGGACCG-CTTCT 888
| |||||| | |||| ||||||| |||||||||| | |||||||||||| | | ||
Sbjct 311 TAAAAGAATATAGTTTATTCTGTTTCGATTTTACAAGA-GAGAGATTTGGA-GGTCGCCT 368
Query 889 CCCTCTTCCATTCCAATGTTATAATCAAACTTCTCTAGTTCTATCTACTGTTCAAGAAGA 948
||||| ||||| || | | || || |||| || ||||||||||||||| ||||||
Sbjct 369 TCCTCTGCCATTTCACTCTGGTACCCATGGTTCTGTAATTCTATCTACTGTTCGAGAAGA 428
Query 949 GCAGCTTGCAGTGTTATGTAAGAGGTGTGATGCATATGAGACGAAGATATGGATTACAAC 1008
||||||||||||||| ||| | || ||||| | |||||||||| |||||| |||||||
Sbjct 429 TAAGCTTGCAGTGTTATTTAATAAGTTTGATGTAGATGAGACGAAAATATGGGTTACAAC 488
Query 1009 AAAGATTGAGCCCAATGCAGTGTCGTGGAGCTACTTCTTAAAATTTGAT 1057
|||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 489 AAAGATTGAGCCCAATGCAGTGACGTGGAGCTACTTCTTAAAACTTGAT 537
> Ahg479142 jgi|Araly1|479142|fgenesh2_kg.3__1843__AT3G16740.1
Length=1369
Score = 122 bits (66), Expect = 4e-27
Identities = 162/206 (79%), Gaps = 15/206 (7%)
Strand=Plus/Plus
Query 841 ATTT-TTACTCTGTTTTGATTTTACAAATGAGAGATTTGGACCGCTTCTCCCTCTTCCAT 899
|||| |||||||||||||||||||||| ||||| |||||||||| ||| ||||| || |
Sbjct 781 ATTTCTTACTCTGTTTTGATTTTACAAGGGAGAGGTTTGGACCGCGTCTGCCTCTGCCTT 840
Query 900 TCCAATGTTATAATCAA-ACTTCTCTAG-TTCTATCTACTGTTCA-AGA-AGAGCAGCTT 955
| || | || | | || | | || | | |||||||| |||| | ||| | |||| |||
Sbjct 841 TTCACTCTTTTGTTGAAGA-TACTGT-GACTCTATCTAGTGTT-AGAGATA-AGCAACTT 896
Query 956 GCAGTGTTATGTAAGAGGTGTGATGCATATGAGAC--GAAGATATGGATTA-CAACAAAG 1012
|||||||||| | || ||| |||||| | | | |||||||||||||| | | |||
Sbjct 897 GCAGTGTTATTTCAGCCATGTTATGCATCT-A-CCGTGAAGATATGGATTAGTAGC-AAG 953
Query 1013 ATTGAGCCCAATGCAGTGTCGTGGAG 1038
||||||||||||||||||||||||||
Sbjct 954 ATTGAGCCCAATGCAGTGTCGTGGAG 979
> Ahg923074 jgi|Araly1|923074|scaffold_104355.1
Length=1079
Score = 93.5 bits (50), Expect = 3e-18
Identities = 103/128 (80%), Gaps = 6/128 (5%)
Strand=Plus/Plus
Query 462 TTA-ATCAAGACCAGATATTTAAAGTGTTTCATTGTGATGGTTTATTGTTATGCATCACC 520
||| |||||| |||||| ||||| ||||| || | || ||| | |||||| | |||
Sbjct 286 TTAGATCAAGTGGAGATATCAAAAGTTTTTCACTGCAACGGCTTACTCTTATGCTTGACC 345
Query 521 AATGAGGATAATACTAGGCTCGTGGTATGGAACCCGTATTTGGCACAAACCAGGT-GCAT 579
| |||| || ||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 346 -A--AGGACAAGACTAGGCTCGTGGTATGGAACCCGTATTTGGGACAAACCAGGTCG-AT 401
Query 580 CCAACCCA 587
| ||||||
Sbjct 402 CGAACCCA 409
> Ahg930681 jgi|Araly1|930681|scaffold_303138.1
Length=1098
Score = 80.5 bits (43), Expect = 3e-14
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand=Plus/Plus
Query 524 GAGGATAATACTAGGCTCGTGGTATGGAACCCGTATT-TGGCACAAACCAGGTGCATCCA 582
|||||||||||||||||||||||||||||||||| | |||| ||||||| ||| |||||
Sbjct 335 GAGGATAATACTAGGCTCGTGGTATGGAACCCGTGTACTGGC-CAAACCAAGTGGATCCA 393
Query 583 AC 584
||
Sbjct 394 AC 395
> Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1
Length=3192
Score = 63.9 bits (34), Expect = 3e-09
Identities = 53/62 (85%), Gaps = 2/62 (3%)
Strand=Plus/Plus
Query 524 GAGGATAATACTAGGCTCGTGGTATGGAACCCGTATT-TGGCACAAACCAGGTGCATCCA 582
||||| |||||||||||||||||||||||||||| | ||| ||||| ||||| || ||
Sbjct 1 GAGGACAATACTAGGCTCGTGGTATGGAACCCGTGTACTGGT-CAAACAAGGTGGATTCA 59
Query 583 AC 584
||
Sbjct 60 AC 61
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47348662914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5