BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19570.2
Length=2624
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479470 jgi|Araly1|479470|fgenesh2_kg.3__2171__AT3G19570.2 3533 0.0
Ahg923423 jgi|Araly1|923423|scaffold_104704.1 1517 0.0
> Ahg479470 jgi|Araly1|479470|fgenesh2_kg.3__2171__AT3G19570.2
Length=2628
Score = 3533 bits (1913), Expect = 0.0
Identities = 2404/2629 (91%), Gaps = 81/2629 (3%)
Strand=Plus/Plus
Query 47 TCAGAATACCCCAAATCCAGAAACCCCACCCTTTCTTCAATTCTCACATCTCTCTCTCTT 106
|||||| ||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 30 TCAGAAAACCCCAAATCCAGAAACCCCA-CCTTTCTCCAATTCTCACA----TCTCTCTT 84
Query 107 CGCTCTGAAGCAAAGACAAATATGCAAAATCCTCTCTG-AAC---AAAATTCAC-TTTGG 161
|||||||||||||||| |||||||||||||||| | || ||| |||| |||| ||| |
Sbjct 85 CGCTCTGAAGCAAAGAAAAATATGCAAAATCCTTTGTGAAACAAAAAAAATCACATTT-G 143
Query 162 ATTTGC-AGA---ATTTA-TTTGCTCTAA-GT-TAGAGTGAGGAGAAGCAACTG-C---- 209
| |||| | | ||||| |||| ||||| || |||||||||||||| ||||| |
Sbjct 144 A-TTGCAAAATTTATTTATTTTG-TCTAAGGTAGAGAGTGAGGAGAAGAAACTGACAAAT 201
Query 210 CAAATCTCTGTAATGCACTGTGAAGATCTCGAAGAAC-A-AC-AAGACGAAGAAGAAGAC 266
||||||||||||||||||||||||||||||||||| | | || |||| ||||||||||||
Sbjct 202 CAAATCTCTGTAATGCACTGTGAAGATCTCGAAGACCAAGACGAAGAAGAAGAAGAAGAC 261
Query 267 GAAGCAGCGAGACATTTCTCGTAGATAATGGTGGCTGCGATTCCTCAAGGAGCAGCAATT 326
||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct 262 GAAGCAGCGAGTGATTTCTCGTAGAGAATGGTGGCTGCGATTCCTCAAGCAGCAGCTATT 321
Query 327 TCCAACACCGACTCTAAGAATCCTCCACCTCGAGATCGGCAAGACAAACCTCAGCTCACA 386
|||| ||||||||||||||| ||||||||||||||| || ||||||||||| ||||||
Sbjct 322 TCCAGCACCGACTCTAAGAA---TCCACCTCGAGATCGACAGGACAAACCTCAACTCACA 378
Query 387 GCTAACAATGGCGGACTACAACGAAGACCTAGAGCTGCTAAAAATGTCCCCTCACGCTAC 446
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 379 GCTAACAATGGCGGACTACAACGAAGACCTAGAGCTGCTAAAAGTGTCCCCTCGCGCTAC 438
Query 447 TTATCCCCTTCTCCTTCACATTCCacgacgacgacgacgacCACTGCTACATCTACTTCG 506
||||| ||||||||||| || ||| | |||| | || ||||||||||||||||||||
Sbjct 439 TTATCTCCTTCTCCTTCTCA-TCC-C-TCGAC--C-ACCACCACTGCTACATCTACTTC- 491
Query 507 ACTTCGTCTTCTTCGTCTGTGATACTGAGGTCTAGTAAGCGATATCCTTCCCCTTTGCTC 566
| || ||||||||||||| | |||||||| | |||||||||||||||||||||||||||
Sbjct 492 -C-TCTTCTTCTTCGTCTGCGGTACTGAGGACAAGTAAGCGATATCCTTCCCCTTTGCTC 549
Query 567 TCTCGCACGACGAATTCTGCTTCTAATTTGGTTTATACGCCTTCCTCGTTACCTAAACGG 626
|||||| |||||||||||||||||||||||||| | |||||||||||||| || ||||||
Sbjct 550 TCTCGCTCGACGAATTCTGCTTCTAATTTGGTTAAGACGCCTTCCTCGTTGCCCAAACGG 609
Query 627 TCTCAATCGGTGGACCGTCGTCGTCCGTCGGCAGTTTCTGACACCCGAACGGAAATGTCG 686
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 610 TCTCAATCGGTGGACCGTCGTCGTCCGTCGGCAGTTTCTGACACCAGAACCGAAATGTCG 669
Query 687 GCGGCGACGAAGATGCTTATCACTTCTACGAGGAGTTTATCTGTTTCCTTTCAAGGAGAG 746
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 670 GCGGCGACGAAGATGCTTATCACTTCTACTAGGAGTTTATCTGTTTCTTTTCAAGGAGAG 729
Query 747 GCGTTTTCGT-TTCCGATTAGTAAGAAGAAGGAGACTGCCACGCCGGTTTCTCACCGGAA 805
|||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 730 GCGTTTTC-TCTTCCGATTAGTAAGAAGAAGGAGACTACCACGCCTGTTTCTCACCGGAA 788
Query 806 ATGTACTCCGGAGCGGCGGAGAGCGACACCTGTTCGAGATCAGCGGGAGAATTCAAAGCC 865
|| |||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 789 ATCTACTCCTGAGAGGCGGAGAGCGACACCTGTTCGAGATCAGAGGGAGAATTCTAAGCC 848
Query 866 GGTGGATCAGCAACTGTGGCCTGGTGCTTCTCGGAGGGGAAGTTCTGAATCTGTTGTGCC 925
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 849 GGTGGATCAGCAACTGTGGCCAGGTGCTTCTCGGAGGGGAAGTTCTGACTCTGTTGTGCC 908
Query 926 GAATTCGCTTTCTAGAAGCGTGGATTCTGACAGTGATGA-T-GGGAGGAAGCTTGGATCT 983
|||||||||||||||||||||| ||| |||||||||| | | | | ||||||||||||||
Sbjct 909 GAATTCGCTTTCTAGAAGCGTGAATTGTGACAGTGAT-AGTAGTG-GGAAGCTTGGATCT 966
Query 984 GGCTTTGTGGGAAGGTCAATGTTGCAGCATTCGCAGAGTTCTAGGGTTTCTGGTGATGGG 1043
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 967 GGCTTTGTGGGAAGGTCAATGTTGCAGCATTCTCAGAGTTCTAGGGTTTCTGTTGATGAG 1026
Query 1044 AGATTGAATTTAGGTTTTGTAGGAGGTGATGGAATGTTGGAAATGAGAGATGAGAACAAG 1103
||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1027 AGATTGAATTTAGATTTTGGAGGAGGTGATGGAATTTTGGAAATGAGAGATGAGAGCAAG 1086
Query 1104 GCAAGACAAAGCACACATCCAAGATTGGCTTCTAGCGTTTCGTGTGACTTTACTGCATCT 1163
|||||| ||||||| |||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 1087 ACAAGACCAAGCACATATCCAAAATTGGGTTCTAGTGTTTCGTGTGACTTTACTGCATCT 1146
Query 1164 GATACTGATAGTGTTTCATCTGGTAGTACTAATGGTGCGCATGAA---TG---TGGT-TC 1216
|||||||||||||||||||||||||| |||||||||||||| ||| || |||| ||
Sbjct 1147 GATACTGATAGTGTTTCATCTGGTAGCACTAATGGTGCGCAGGAATGTTGTTCTGGTGTC 1206
Query 1217 --TGGTGAGGTTTCTAAAACAAGGAGCTTGCCGCG---TAATGGTATGGCTTCTACTAAA 1271
||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct 1207 AATGGTGAGGTTTCTAAAACAAGGAGCTTGCCGCGTAATAATGCTATGGCTTCTGCTAAA 1266
Query 1272 TTCTGGCAAGAGACTAATAGCAGGTTAAGGCGGATGCAGGATCCTGGCTCACCTCAATGT 1331
||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||
Sbjct 1267 TTCTGGCAAGAGACTAATAGCCGGTTAAGGCGGTTTCAGGATCCTGGCTCACCTCGATGT 1326
Query 1332 TCTAGCCCAAGTTCGAGAATCAGTAGTA--TC-TCATCAAAGTTCAGTCAATCGAAACGG 1388
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1327 TCTAGCCCAAGTTCGAGAATCAGTAGTATCTCATCATCAAAGTTCAGTCAATCGAAACGG 1386
Query 1389 TTCTCTAGTGATAGTCCGTTGACATCATCTCCTCGTGGTATGACTTCTCCAATAAGGGGT 1448
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1387 TTCTCTAGTGATAGTCCGTTGACATCATCTCCTCGCGGTATGACTTCTCCAATAAGGGGT 1446
Query 1449 GCTACTCGCCCTGCTTCACCAAGTAAGCTTTGGGCAACAGCTACATCAGCTCCAGCTAGG 1508
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1447 GCTTCTCGCCCTGCTTCACCAAGTAAGCTTTGGGCAACAGCTACATCAACTCCAGCTAGG 1506
Query 1509 ACATC-ATCTAGTCCTTCTCGAGTGAGAAATGGAGTTTCTGAACAAATGAATGCTTATAA 1567
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GCA-CTTTCTAGTCCTTCCCGAGTGAGAAATGGAGTTTCTGAACAAATGAATGCTTATAA 1565
Query 1568 CCGCACCTTGCCTTCAATTCTTTGTTTCTCTGCTGATATTAGGAGGGGTAAAATTGGGGA 1627
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1566 CCGCACCTTGCCTTCAATTCTTTGTTTCTCTGCTGATATTAGGAGGGGGAAAATTGGGGA 1625
Query 1628 GGATCGTGTTATGGATGCCCACTTGTTGAGGCTTCTGTATAACCGTGATCTGCAGTGGCG 1687
|||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 1626 GGATCGCGTTATGGATGCCCACTTGTTGAGGCTTCTGTATAACCGTTACCTGCAATGGCG 1685
Query 1688 GTTTGCCAATGCGAGGGCAGACTCCACTCTCATGGTACAAAGACTGAGTGCAGAGAAAAT 1747
|||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||
Sbjct 1686 GTTTGCCAATGCGAGGGCGGACTCTACTTTCATGGTACATAGACTGAGTGCAGAGAAAAA 1745
Query 1748 CCTGTGGAATGCATGGGTATCAATCTCGGAATTGCGCCATTCTGTCACTCTGAAACGGAT 1807
||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1746 CCTCTGGAACGCATGGGTATCAATCTCGGAACTACGCCATTCTGTCACTCTGAAACGGAT 1805
Query 1808 CAAGTTGCTCTTGATGAGGCAGAAACTGAAACTAGCTTCCATCTTGAAGGAGCAGATGTG 1867
||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1806 CAAGTTGCTTTTGCTGAGGCAAAAACTGAAACTAGCTTCCATCTTGAAGGAGCAGAT-TG 1864
Query 1868 -TTATCTAGAAGAATGGTCTCTTTTGGACAGAAATCACTCAAATTCTTTGTCAGGAGCAA 1926
|||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
Sbjct 1865 GTTATCTAGAAGAATGGTCTCTTATGGACAGAGATCATTCAAATTCTTTGTCAGGAGCGA 1924
Query 1927 CTGAAGCCTTGAAAGCCAGCACACTTCGTCTTCCAGTTAGTGGTAAAGCCGTGGTTGATA 1986
||||||| |||||||| ||||| |||||||||||| ||||||| |||||| |||||||||
Sbjct 1925 CTGAAGCTTTGAAAGCGAGCACGCTTCGTCTTCCAATTAGTGGAAAAGCCTTGGTTGATA 1984
Query 1987 TTCAAGATCTCAAGCATGCTGTTAGTTCAGCGGTTGATGTCATGCACGCTATGGTGTCTT 2046
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1985 TTCAAGATCTCAAGCATGCTGTTAGTTCAGCCGTTGATGTCATGCACGCTATGGTGTCTT 2044
Query 2047 CAATATTCTCACTTACATCGAAGGTGGAGGAAATGAATTCAGTAATGGCAGAAATGGTGA 2106
| || ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2045 CGATTTTCTCGCTGACATCGAAGGTGGAGGAAATGAATTCAGTAATGGCGGAAATGGTGA 2104
Query 2107 ATATCACTG-GAAAAGAAGAGGTTTTGCTCGAACAGTGTCAAGGATTCTTAACAAGAGTA 2165
||||||||| |||| ||| | |||||||| ||||||||||||||||||||| ||||||||
Sbjct 2105 ATATCACTGCGAAA-GAAAATGTTTTGCTTGAACAGTGTCAAGGATTCTTATCAAGAGTA 2163
Query 2166 GCAGCAATGCAGGTTACGGACTGCAGCATGAAGACGCACATAATACAACTTAGCCGGCTA 2225
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 2164 GCAGCAATGCAGGTAACGGACTGCAGCATGAAGACGCACATAATACAACTAAGCCGGATA 2223
Query 2226 TAAACCAACCTGACTTCACAACTGTAGAAACTGATCTCCTCTGCGTTTACACGACTACTC 2285
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 2224 TAAACCAACCTGACTTCACAACTGTAGAAACTGATCTCCTCTGAGCTTACACGACTACTC 2283
Query 2286 ACGCCACTTCACAACCTGAATGGTTTCTAACAACGTTTTACATTCCCACGGCCTTCTCTC 2345
||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||| ||
Sbjct 2284 ACGCCACTTCACAACATGAATGATTTCTAACAACGTTTTAGACTCCCACGGCCTTCCCTT 2343
Query 2346 GGAATCTCAAAACCGCCTTTATCGTTTTCAACCGGATCAAGGTGTGCTGTCTCGAGATAT 2405
||| || ||||||||||||||| ||||||||||||||||||||| | | ||||| |||||
Sbjct 2344 GGATTCCCAAAACCGCCTTTATTGTTTTCAACCGGATCAAGGTGAGAT-TCTCGGGATAT 2402
Query 2406 CTGTTTCACTGCACTCCGG-ATTCAACGTTTTTTAAATGTAAGTTCCTGCATTGGAGAAT 2464
|||||||||||||||| || |||| ||||||||| | | ||||||||||||||||||| |
Sbjct 2403 CTGTTTCACTGCACTCTGGGATTCGACGTTTTTTTATT-TAAGTTCCTGCATTGGAGATT 2461
Query 2465 TACAGAAGA-A-AGGTGAAAGAATAGAATGTGGTGTTTAGTTTTACCTATGAATTTAGTT 2522
||||||||| | |||| ||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 2462 TACAGAAGAGAGAGGTAAAAGAATAGAATGTGGTGTTTAGTTTTGCCTATGAAGTTAGCT 2521
Query 2523 TAATTGTATACAGAAAAAGCTTCTAAATAGATCATT-GACTTTTGTTCTCAAATGAAGaa 2581
|||||||||||||||||||||||||| |||||| || | ||||||||||| |||||||||
Sbjct 2522 TAATTGTATACAGAAAAAGCTTCTAA-TAGATCTTTTG-CTTTTGTTCTCTAATGAAGAA 2579
Query 2582 -aaaaaa--TGTACATAA---TGAAGATATCAATCTCTCTTATTTAGAG 2624
|||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2580 GAAAAAAAATGTACATAAAGATGAAGATATCAATCTCTCTTATTTAGAG 2628
> Ahg923423 jgi|Araly1|923423|scaffold_104704.1
Length=2023
Score = 1517 bits (821), Expect = 0.0
Identities = 1651/2034 (81%), Gaps = 128/2034 (6%)
Strand=Plus/Plus
Query 318 GCAGCAATTTCCAA-CACCGACTCTAAGAATCCTCCACCTCGAGATCGGCAAGACAAACC 376
||||| |||| ||| ||| ||| | ||||| | |||||||||||||| ||||| |||||
Sbjct 30 GCAGCGATTT-CAACCACTGAC-CCAAGAA-AC-CCACCTCGAGATCGACAAGATAAACC 85
Query 377 TC-A-GCTCACAGCTAACAATGGCGGACTACAACGAAGACCTAGAGCTGCTAAA-AATGT 433
|| | || | | | ||||||||||||| | || ||||||| |||| || ||| || ||
Sbjct 86 TCAATCCTTA-A-CCAACAATGGCGGAC-A-AA-GAAGACCCAGAG--GC-AAACAA-GT 136
Query 434 CCCCTCACGCTACTTATCCCCTTCTCC-T-TCA------C-ATT-C--Cacgacgacgac 481
|| || ||||||||||| |||||||| | ||| | || | ||| || || ||
Sbjct 137 TCCTTCTCGCTACTTATCTCCTTCTCCTTCTCACTCTGTCTCTTCCAACACCACTACCAC 196
Query 482 gacgacCACTGCTACATCTACTTCGACTTCGTCTTCTTCGTCTGTGATACTGAGGTCTAG 541
|| |||||| | || ||| |||| | || |||||||| |||| ||||| || ||||
Sbjct 197 TACCACCACTACCACGTCTTCTTCCTCCTCTTCTTCTTCCTCTGCAATACTCAGAACTAG 256
Query 542 TAAGCGAT----A--TCCTTCCCCTTTGCTCTCTCG---CACGACGAATTCTGCTTCTAA 592
||| |||| | |||||| ||||| |||||||| |||||||||||| ||||||||
Sbjct 257 TAAACGATACCCATCTCCTTCGCCTTTACTCTCTCGCTCCACGACGAATTCCGCTTCTAA 316
Query 593 TTTGGTTTATACGCCTTCCTCGTTACCTAAACGGTCTCAATCGGTGGACCGTCGTCGTCC 652
|| | | |||||||| | ||||||||||||||| ||||| |||||||||||||| ||
Sbjct 317 TTCCATCAAAACGCCTTCTTTGTTACCTAAACGGTCCCAATCAGTGGACCGTCGTCGACC 376
Query 653 GTCGGCAGTTTCTGACACCCG-A-AC-G-GAAATGTCGGCGGCGACGAAGATGCTTATCA 708
||||| ||| | | || | | | | | |||||||||||||| ||||||||||||||||
Sbjct 377 CTCGGCGGTTCCGGTCA-CTGTAGGCAGTGAAATGTCGGCGGCTACGAAGATGCTTATCA 435
Query 709 CTTCTACGAGGAGTTTATCTGTTTCCTTTCAAGGAGAGGCGTTTTCGT-TTCCGATTAGT 767
|||| || |||||||| |||||||| |||||||| || || ||||| | |||||||||||
Sbjct 436 CTTCCACTAGGAGTTTGTCTGTTTCGTTTCAAGGTGAAGCCTTTTC-TCTTCCGATTAGT 494
Query 768 AAGAAGAAGGA-G--ACTGCCACGCCGGTTTCTCACCGGAAATGTACTCCGGAGCGGCGG 824
|| ||||| || | ||| | |||||||||||||||||||||| |||||||||||| |||
Sbjct 495 AAAAAGAAAGAGGCTACTACTACGCCGGTTTCTCACCGGAAATCTACTCCGGAGCGACGG 554
Query 825 AGAGCGACACCTGTTCGAGATCAGCGGGAGAATTCAAAGCCGGTGGATCAGCAACTGTGG 884
||| |||| || |||||||||||| | ||||| || ||||| ||||||||||||| ||||
Sbjct 555 AGATCGACGCCGGTTCGAGATCAGAGAGAGAACTCTAAGCCTGTGGATCAGCAACGGTGG 614
Query 885 CCTGGTGCTTCTCGGA-GGGGAAGTTCTGAATCTGTTGTGCCGAATTCGCTTTCTAGAAG 943
||||| ||||| |||| |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 615 CCTGGAGCTTCACGGAGGGGGAA-TTCCGAATCTGTTGTGCCGAATTCGCTTTCTAGAAG 673
Query 944 CGTGGATTCTGACAGTGATGATGGGAGG-AAGCTTGGATCTGGCTTTG-TGGGAAGGTCA 1001
| | |||| || |||||| | |||| |||||||||||||| |||| |||| ||||||
Sbjct 674 CTTAGATTGTGGTAGTGAT-A---GAGGAAAGCTTGGATCTGGGTTTGTTGGG-AGGTCA 728
Query 1002 ATGTTGC---A-GC-AT--TCG--CAGAGTTCTAGGGTTTCTGGTGATGGGAGATTGAAT 1052
||||||| | | || | | ||||| |||||||||||| | |||||||||||| |
Sbjct 729 ATGTTGCATAATTCTATGATTGATGAGAGTCCTAGGGTTTCTGTTAATGGGAGATTGAGT 788
Query 1053 TTAGGTTTTGTAGG-AGGTGATGGAAT-GTTGGAAA-TGAGAGATGAGAACAAG-GCAAG 1108
|||| ||| | ||| ||| ||| |||| ||||||| || ||||||||| | || | |||
Sbjct 789 TTAGATTTGGGAGGTAGG-GAT-GAATATTTGGAAATTG-GAGATGAGAGCCAGAG-AAG 844
Query 1109 ACAAAGCACACATCCAAGATTGGCTTCTAGCGTTTCGTGTGACTTT-ACTGCATCTGATA 1167
|| || | | || | ||| | ||||| ||||| ||||| ||| ||||| |||||||
Sbjct 845 ACCAA--ATA-AT---GGTTTGACGTCTAGTGTTTCCTGTGA-TTTCACTGCTTCTGATA 897
Query 1168 CTGATAGTGTTTCATCTGGTAGTACTAATGGTGCGCATGAATGTGGTTCTGGTG---A-- 1222
||||||||||||| |||||||| |||| ||||| || |||||||| ||||||| |
Sbjct 898 CTGATAGTGTTTCTTCTGGTAGCACTAGTGGTGTTCAGGAATGTGGCTCTGGTGTTAATG 957
Query 1223 -GG---TTTCTAAAACAAGGAGCTTGCCGCGTAATGGTATGGCTTCTACTAAATTCTGGC 1278
|| | |||||| ||| ||||||||| |||||| |||||||||| ||| || ||||
Sbjct 958 GGGAAATCTCTAAATCAAAGAGCTTGCCTCGTAATATTATGGCTTCTGCTAGGTTTTGGC 1017
Query 1279 AAGAGACTAATAGCAGGTTAAGGCGGATGCAGGATCCTGGCTCACCTCAATGTTCTAGCC 1338
|||||||||||||| ||||||||||| |||||||||| || || ||| || |||||||
Sbjct 1018 AAGAGACTAATAGCCGGTTAAGGCGGTTGCAGGATCCAGGTTCGCCTTTATCCTCTAGCC 1077
Query 1339 CAAGTTCGAGAATCAGTAGTATCTCATCAAAGTTCAGTCAATCGAAACGGTTCTCTAGTG 1398
| ||| || || ||||||| | || |||||||| ||| ||||||||||| ||||| |
Sbjct 1078 CGGGTTTGAAAACCAGTAGTGTATCTTCAAAGTTTGGTCTTTCGAAACGGTTTTCTAGCG 1137
Query 1399 ATAGTCCGTTGAC---ATCATCTCCTCGTGGTATGACTTCTCCAATAAG-GG--GTGCTA 1452
|| | | ||| | ||||||||||||||||||| ||||||| |||| || |||||
Sbjct 1138 AT-G-CTGTT-CCTTTATCATCTCCTCGTGGTATGGCTTCTCCTGTAAGAGGTTCTGCTA 1194
Query 1453 CTCGCCCTGCTTCACCAAGTAAGCTTTGGGCAACAGCTACATCAGCTCCAGCTAGGA-CA 1511
|||| ||||||||||||||||||||||||| ||| |||| ||| ||||||||| || |
Sbjct 1195 TTCGCTCTGCTTCACCAAGTAAGCTTTGGGCGACAACTACCTCATCTCCAGCTA-GAGC- 1252
Query 1512 TC-ATCTAGTCCTTCTCGAGTGAGAAATGGAGTTTCTGAACAAATGAATGCTTATAACCG 1570
| || |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1253 GCTTTCGAGTCCTTCTCGAGTGAGAAATGGAGTTTCTGATCAAATGAACGCTTATAACCG 1312
Query 1571 C-AC-CT-TGCCTTCAATTCTTTGTTTCTCTGCTGATATTAGGAGGGGTAAAATTGGGGA 1627
| || | ||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1313 CAACAATACGCCTTCAATTCTTAGTTTCTCTGCTGATATTAGGAGAGGTAAAATTGGGGA 1372
Query 1628 GGATCGTGTTATGGATGCCCACTTGTTGAGGCTTCTGTATAACCGTGATCTGCAGTGGCG 1687
|||||||||||||||||| || |||||||||||||| ||||||||| | |||||||||||
Sbjct 1373 GGATCGTGTTATGGATGCACATTTGTTGAGGCTTCTATATAACCGTTACCTGCAGTGGCG 1432
Query 1688 GTTTGCCAATGCGAGGGCAGACTCCACTCTCATGGTACAAAGACTGAGTGCAGAGAAAAT 1747
|||| ||||||||||||||| || ||| | ||||| |||||| ||| ||||||||||
Sbjct 1433 TTTTGTCAATGCGAGGGCAGATTCTACTGTTATGGTGCAAAGATTGAACGCAGAGAAAAA 1492
Query 1748 CCTGTGGAATGCATGGGTATCAATCTCGGAATTGCGCCATTCTGTCACTCTGAAACGGAT 1807
|||||||||||||||||||||||||||||||||||| || ||||||| | ||||| ||
Sbjct 1493 CCTGTGGAATGCATGGGTATCAATCTCGGAATTGCGGCACAGTGTCACTTTAAAACGAAT 1552
Query 1808 CAAGTTGCTCTTGATGAGGCAGAAACTGAAACTAGCTTCCATCTTGAAGG-AGCAGATGT 1866
||||||||| ||| | ||||||||| ||||||| ||||| || |||| || | ||||||
Sbjct 1553 CAAGTTGCTTTTGCTAAGGCAGAAATTGAAACTGGCTTCTATTTTGAGGGGA-CAGATGG 1611
Query 1867 GTTATCTAGAAGAATGGTCTCTTTTGGACAGAAATCACTCAAATTCTTTGTCAGGAGCAA 1926
||| ||||||||||||||||||| |||| ||| |||| |||| |||| |||| |||||||
Sbjct 1612 GTTTTCTAGAAGAATGGTCTCTTCTGGATAGAGATCATTCAAGTTCTCTGTCTGGAGCAA 1671
Query 1927 CTGAAGCCTTGAAAGCCAGCACACTTCGTCTTCCAGTTAGT-GGTAAAGCCGTGGTTGAT 1985
| ||| ||||||||||||| || |||||||| ||| | ||| || ||| |||||||||||
Sbjct 1672 CCGAATCCTTGAAAGCCAGTACGCTTCGTCTACCAAT-AGTTGGAAAAACCGTGGTTGAT 1730
Query 1986 ATTCAAGATCTCAAGCATGCTGTTAGTTCAGCGGTTGATGTCATGCACGCTATGGTG-TC 2044
|| ||||| ||||||||||||||||||||||| || ||||| ||||| |||||| | ||
Sbjct 1731 ATCCAAGACCTCAAGCATGCTGTTAGTTCAGCCGTCGATGTAATGCAAGCTATG-TCATC 1789
Query 2045 TTCAATATTCTCACTTACATCGAAGGTGGAGGAAATGAATTCAGTAATGG-CAGAAATGG 2103
||| ||||||||||| || | ||||||||| || |||||||| ||||||| | |||| |
Sbjct 1790 TTCCATATTCTCACTGACGTTGAAGGTGGATGAGATGAATTCTGTAATGGTC-GAAACCG 1848
Query 2104 TGAATATCACTGGAAAAGAAGAGGTTTTGCTCGAACAG-TGTCAAGGATT-CTTAACAAG 2161
||||| | |||| || ||| |||||||||| ||| || |||||||| || |||| ||||
Sbjct 1849 TGAATGTAACTGCTAAGGAAAAGGTTTTGCTTGAA-AGATGTCAAGG-TTGCTTATCAAG 1906
Query 2162 AGTAGCAGCAATGCAGGTTACGGACTGCAGCATGAAGACGCACATAATACAACTTAGCCG 2221
|||||||| ||||||||||| || || |||||||| ||||| ||||||||||| || ||
Sbjct 1907 CGTAGCAGCTATGCAGGTTACTGATTGTAGCATGAAAACGCATATAATACAACTAAGTCG 1966
Query 2222 GCTATAAA-C-CAA-C--CT-GACTTCACAACTGTAGAAA--CTGATCT-CCTC 2266
| || || | ||| | || ||||||||||||||||||| ||||||| ||||
Sbjct 1967 GATACCAATCACAAGCAGCTTGACTTCACAACTGTAGAAAAACTGATCTTCCTC 2020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98958456510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5