BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19580.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479472 jgi|Araly1|479472|fgenesh2_kg.3__2173__AT3G19580.2 1279 0.0
Ahg496850 jgi|Araly1|496850|fgenesh2_kg.8__2666__AT5G67450.1 73.1 4e-12
> Ahg479472 jgi|Araly1|479472|fgenesh2_kg.3__2173__AT3G19580.2
Length=998
Score = 1279 bits (692), Expect = 0.0
Identities = 869/949 (92%), Gaps = 34/949 (4%)
Strand=Plus/Plus
Query 120 ATGGCCCTCGAAGCGATGAACACTCCAACTTCTTCTTTCACCAGAATCGAAACGAAAGAA 179
|||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 1 ATGGCCCTCGAAGCGATGAATTCTCCAACTTC--C-TTCACCAGAATCGAAACGAAAGAA 57
Query 180 GATTTGATGAACGACGCCGTTTTCATTGAGCCGTGGCTTAAACGCAAACGCTCCAAACGT 239
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 58 GATTTGATGAACGACGCCGTTTTCATTGAACCGTGGCTTAAACGCAAACGCTCCAAACGT 117
Query 240 CAGCGTTCTCACAGCCCTTCTTCGTCTTCTTCCTCACCGCCTCGATCTCGACCCAAATCC 299
||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct 118 CAGCGTTCTCACAGCCCTTCTTCGTCTTCCTCCTCGCCGCCTCGATCTCGTCCTAAATCG 177
Query 300 CAGAATCAAGATCTTACGGAAGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCTAAA 359
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 178 CAGAATCAAGATCTTACAGAGGAAGAGTATCTCGCTCTCTGTCTCCTCATGCTCGCTAAA 237
Query 360 GATCAACCGTCGCAAACGCGATTTCATCAACAGTCGCAATCGTTAACGCCGCCGCCAGAA 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GATCAACCGTCTCAAACGCGATTTCATCAACAGTCGCAATCGTTAACGCCGCCGCCAGAA 297
Query 420 TCAAAGAACCTTCCGTACAAGTGTAACGTCTGTGAAAAAGCGTTTCCTTCCTATCAGGCT 479
|||||||| |||||||||||||||| ||| |||| ||||||||||||||| |||||||||
Sbjct 298 TCAAAGAATCTTCCGTACAAGTGTAGCGTTTGTGGAAAAGCGTTTCCTTCGTATCAGGCT 357
Query 480 TTAGGCGGTCACAAAGCAAGTCACCGAATCAAACCACCAACCGTAATCTCAACAACCGCC 539
|||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||
Sbjct 358 TTAGGCGGTCACAAAGCAAGTCACCGTATCAAACCACCAACCGTAATCT---CTATCGCC 414
Query 540 GATGATTCAACAGCTCCGACCATCTCCATCGTCGCCGGAGAAAAACATCCGATTGCTGCC 599
||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||
Sbjct 415 GATGATTCAACAGCTCCGACCATCT-C--CGTCGTCGGAGAAAAACATCCGATTGCCGCC 471
Query 600 TCCGGAAAGATCCACGAGTGTTCAATCTGTCATAAAGTGTTTCCGACGGGTCAAGCTTTA 659
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 472 TCCGGCAAGATCCACGAGTGTTCAATATGTCACAAAGTGTTTCCGACGGGTCAAGCACTC 531
Query 660 GGCGGTCACAAACGTTGTCACTACGAAGGCAACCTCGGCGGCGGAGGAGGAGGAGGAAGC 719
|||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||
Sbjct 532 GGCGGTCATAAACGCTGTCACTACGAAGGCAACCT---CGGC---GGAGGAGGAGGAAGC 585
Query 720 AAATCAATCAGTCACAGTGGAAGCGTGTCGAGCACGGTATCGGAAGAAAGGAGCCACCGT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 AAATCAATCAGTCACAGTGGAAGCGTGTCGAGCACGGTATCGGAAGAAAGGAGCCACCGT 645
Query 780 GGATTCATCGATCTAAACCTACCGGCGTTACCTGAACTCAGCCTTCATCACAATCCAATC 839
||||| ||||||||||||||||||||||||||||| ||| | |||||| |||| ||||||
Sbjct 646 GGATTTATCGATCTAAACCTACCGGCGTTACCTGAGCTCGGTCTTCATAACAACCCAATC 705
Query 840 GTCGACGAAGAGATCTTGAGTCCGTTGACCGGTAAAAAACCGCTTTTGTTGACCGATCAC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GTCGACGAAGAGATCTTGAGTCCGTTGACCGGTAAAAAACCGCTTTTGTTGACCGATCAC 765
Query 900 GACCAAGTCATCAAGAAAGAAGATTTATCTTTAAAAATCTAATACTCGACTATTAATTCT 959
||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 766 AACCAAGTCATCAAGAAAGAAGATTTCTCTTTAAGAATCTAATATTCGACTATTAATTCT 825
Query 960 TGTGTGatttttttcgttacaaccatagtttcattttcatttttttagttacaaattttt 1019
||||| |||||| | | | ||| | |||||||||||||||| |||||
Sbjct 826 TGTGTAATTTTT--C---A------T--TTT--T---CATTTTTTTAGTTACAG-TTTTT 866
Query 1020 aATTGTTCTGATTTGGATTGAATATTGGTATATTGTTAGGGGTTGATAC 1068
||| ||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 867 CATTTTTCTGATTTGGATTGAATATTCGTATATTGTTAGGGATTGATAC 915
> Ahg496850 jgi|Araly1|496850|fgenesh2_kg.8__2666__AT5G67450.1
Length=1105
Score = 73.1 bits (39), Expect = 4e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 318 GAAGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCT 356
|||||||||||||||||||||||||||||||||||||||
Sbjct 229 GAAGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCT 267
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5