BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19590.1
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929856 jgi|Araly1|929856|scaffold_302313.1 1759 0.0
Ahg474121 jgi|Araly1|474121|fgenesh2_kg.1__4075__AT1G49910.1 1098 0.0
Ahg949834 jgi|Araly1|949834|scaffold_801721.1 139 5e-32
Ahg950601 jgi|Araly1|950601|scaffold_802488.1 134 2e-30
Ahg927684 jgi|Araly1|927684|scaffold_300141.1 134 2e-30
Ahg951975 jgi|Araly1|951975|scaffold_27900002.1 128 1e-28
> Ahg929856 jgi|Araly1|929856|scaffold_302313.1
Length=1065
Score = 1759 bits (952), Expect = 0.0
Identities = 1031/1069 (96%), Gaps = 5/1069 (0%)
Strand=Plus/Plus
Query 146 TTTGTGATCTTCAACGGGAAAAATGACGACTGTGACTCCGTCCGCCGGTCGTGAGCTCTC 205
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 TTTGTGATCTTCAACGGGAAAAATGACTAC---GACTCCGTCCGCCGGTCGTGAGCTCTC 57
Query 206 GAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAACAGTGATCATCTCCT 265
||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||
Sbjct 58 GAATCCGCCGTCCGACGGCTTTTCCAATCTCCGATTTTCCAATAACAGTGATCATCTCCT 117
Query 266 CGTTTCTTCATGGGATAAGCGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGG 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CGTTTCTTCATGGGATAAGCGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGG 177
Query 326 AGAGTTCTTACATGGCGGAGCAGTACTCGATTGCTGTTTTCACGATGACTTCTCCGGCTT 385
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 178 GGAGTTCTTACATGGCGGAGCAGTGCTCGATTGCTGTTTTCACGATGATTTCTCCGGCTT 237
Query 386 CAGTGTTGGCGCTGATTACAAAGTCCGACGGATTGTATTCAATGTCGGCAAAGAGGACAT 445
|||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 238 CAGTGTTGGCGCCGATTACAAAGTCAGAAGGATTGTATTCAATGTCGGCAAAGAGGACAT 297
Query 446 TTTGGGGACACATGACAAAGCAGTGCGATGTGTTGAGTATTCTTACGCTGC-GGGACAAG 504
||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 298 TTTGGGGACACATGACAAACCAGTGCGATGTGTTGAGTATTCTTATGCTGCAGGG-CAAG 356
Query 505 TGATCACTGGATCTTGGGATAAAACAGTTAAATGTTGGGATCCAAGAGGCGCTAGTGGGC 564
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 357 TGATCACTGGATCTTGGGATAAAACAGTTAAATGTTGGGATCCAAGAGGCGCAAGTGGGC 416
Query 565 CTGAACGCACCCAAGTGGGAACATATTTGCAACCAGAACGTGTTTACTCTATGTCTCTTG 624
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 417 CTGAACGCACCCAGGTGGGAACATATTTGCAGCCAGAGCGTGTTTACTCTATGTCTCTTG 476
Query 625 TTGGACATCGTTTGGTAGTGGCTACAGCAGGAAGGCATGTAAACATCTATGATCTCAGAA 684
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 477 TTGGACATCGTTTGGTAGTGGCAACAGCAGGAAGGCATGTAAACATCTATGATCTCAGAA 536
Query 685 ATATGTCTCAGCCTGAGCAAAGAAGGGAGTCTTCACTGAAATACCAGACGAGATGTGTGC 744
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 537 ATATGTCTCAGCCTGAGCAAAGAAGAGAGTCTTCACTGAAATACCAGACGAGATGTGTGC 596
Query 745 GTTGTTATCCTAATGGAACAGGCTATGCTCTTAGCTCTGTTGAAGGAAGGGTTGCAATGG 804
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 597 GTTGTTATCCTAATGGAACAGGATATGCTCTTAGCTCTGTTGAAGGAAGGGTTGCTATGG 656
Query 805 AGTTTTTTGATCTGTCAGAGGCTGCTCAAGCTAAAAAATATGCTTTCAAATGTCATCGGA 864
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGTTTTTTGATCTGTCAGAAGCTGCTCAAGCTAAAAAATATGCTTTCAAATGTCATCGGA 716
Query 865 AATCAGAGGCTGGAAGGGACATTGTTTACCCTGTAAATTCCATTGCCTTCCATCCAATCT 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AATCAGAGGCTGGAAGGGACATTGTTTACCCTGTAAATTCCATTGCCTTCCATCCAATCT 776
Query 925 ATGGCACCTTTGCAACTGGAGGCTGTGATGGTTTCGTCAACATTTGGGATGGTAACAACA 984
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 777 ATGGCACCTTTGCAACTGGAGGTTGTGATGGTTTCGTCAACATTTGGGATGGTAACAACA 836
Query 985 AGAAGAGGCTATATCAGTACTCAAAGTATCCAACGAGTATCTCGGCACTGTCATTCAGTC 1044
|||||||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 837 AGAAGAGGTTATATCAGTATTCAAAGTATCCAACAAGTATCTCGGCACTGTCGTTCAGTC 896
Query 1045 GAGATGGTCAGCTGCTGGCTGTTGCTTCAAGTTACACATTTGAAGAGGGAGAGAAATCGC 1104
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 897 GAGATGGTCAGCTACTGGCTGTTGCTTCAAGTTACACGTTTGAAGAGGGGGAGAAATCGC 956
Query 1105 AAGAACCGGAGGCCATCTTTGTAAGAAGCGTGAATGAAATCGAAGTGAAACCAAAACCGA 1164
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 957 AAGAACCAGAGGCCATCTTTGTAAGAAGCGTGAACGAAATCGAAGTGAAACCAAAACCCA 1016
Query 1165 AAGTATACCCGAATCCTGCGGCGTAGAAAGGAAGAAACACAAGTTATTT 1213
|||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1017 AAGTATACCCGAATCCTGCGGCCTAGAAAGGAAGAAACACAAGTTATTT 1065
> Ahg474121 jgi|Araly1|474121|fgenesh2_kg.1__4075__AT1G49910.1
Length=1205
Score = 1098 bits (594), Expect = 0.0
Identities = 871/1003 (87%), Gaps = 26/1003 (3%)
Strand=Plus/Plus
Query 192 GGTCGTGAGCTCTCGAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAAC 251
||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||| |
Sbjct 22 GGTCGCGAGCTCTCGAATCCGCCGTCCGATGGGATTTCTAATCTCCGATTTTCCAATAGC 81
Query 252 AGTGATCATCTCCTCGTTTCTTCATGGGATAAGCGTGTGAGATTGTATGATGTGAGCACC 311
|| |||||| | | || ||||||||||| ||| |||| ||||||||||||| || | ||
Sbjct 82 AGCGATCATTTAATAGTCTCTTCATGGGACAAGAGTGTAAGATTGTATGATGCGAACGCC 141
Query 312 AATTCGTTGAAAGGAGAGTTCTTA-CATGGCGGAGCAGTACTCGATTGCTGTTTTCACGA 370
||| | ||| ||| |||||| | ||||| ||||| |||||||||||||| || || ||
Sbjct 142 GATTTGATGAGAGGGGAGTTC-AAGCATGGAGGAGCGGTACTCGATTGCTGCTTCCATGA 200
Query 371 TGACTTC-TCCGGCTTCAGTGTTGGCGCTGATTAC-AAAGTCCGACGGATTGTA-TTCAA 427
||| ||| || || ||||||||| |||| || ||| |||||| |||| |||| | |||||
Sbjct 201 TGA-TTCTTCTGGATTCAGTGTTTGCGCCGA-TACTAAAGTCAGACGAATTG-ACTTCAA 257
Query 428 TGTC-GGCAAAGAGGACATTTTGGGGACACATGACAAAGCAGTGCGATGTGTTGAGTATT 486
|| | |||||||||||| |||||||||| ||||| ||| |||| ||||||||||||||||
Sbjct 258 TG-CTGGCAAAGAGGACGTTTTGGGGACGCATGATAAACCAGTTCGATGTGTTGAGTATT 316
Query 487 CTTACGCTGC-GGGACAAGTGATCACTGGATCTTGGGATAAAAC-AGTTAAATGTTGGGA 544
|||| ||||| ||| ||||||||||||||| |||||||||||| | |||||||||||||
Sbjct 317 CTTATGCTGCAGGG-CAAGTGATCACTGGAAGTTGGGATAAAACTA-TTAAATGTTGGGA 374
Query 545 TCCAAGAGGCGCTAGTGGGCCT-GAACGCACCCA-AGTGGGAACATATTTGCAACCAGAA 602
||||||||| || |||||| || || || || || | | || |||||| |||||| ||
Sbjct 375 TCCAAGAGGTGCAAGTGGG-CTGGAGCGTACACATA-TTGGTACATATCAGCAACCTGAG 432
Query 603 CGTGTTTACTCTATGTCTCTTGTTGGACATCGTTTGGTAGTGGCTACAGCAGGAAGGCAT 662
|||||| ||||| | ||| | |||||| |||||||||| ||||| |||||||||||||||
Sbjct 433 CGTGTTAACTCTCTTTCTGTAGTTGGAAATCGTTTGGTGGTGGCAACAGCAGGAAGGCAT 492
Query 663 GTAAACATCTATGATCTCAGAAATATGTCTCAGCCTGAGCAAAGAAGGGAGTCTTCACTG 722
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 493 GTCAACATTTATGATCTCAGAAATATGTCTCAGCCTGAGCAAAGAAGAGAGTCCTCACTT 552
Query 723 AAATACCAGACGAGATGTGTGCGTTGTTATCCTAATGGAACAGGCTATGCTCTTAGCTCT 782
||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||
Sbjct 553 AAATACCAGACAAGATGTGTGCGTTGTTATCCCAATGGAACAGGATATGCCCTTAGCTCT 612
Query 783 GTTGAAGGAAGGGTTG-CAATGGAGTTTTTTGATCTG-TCAGAGGCTGCTCAAGCTAAAA 840
|||||||| |||| || |||||||||| ||||||| | ||||| ||||||||||||||||
Sbjct 613 GTTGAAGGGAGGG-TGTCAATGGAGTTCTTTGATC-GATCAGAAGCTGCTCAAGCTAAAA 670
Query 841 AATATGCTTTCAAATGTCATCGGAAATCAGAGGCTGGAAGGGACATTGTTTACCCTGTAA 900
||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 671 AATATGCTTTCAAATGTCACCGGAAATCAGAGGATGGAAGGGACATTGTCTACCCTGTAA 730
Query 901 ATTCCATTGCCTTCCATCCAATCTATGGCACCTTTGCAACTGGAGGCTGTGATGGTTTCG 960
|| | ||||| |||||||| || |||||||| ||||| | ||||| |||||||||||||
Sbjct 731 ATGCAATTGCTTTCCATCCGATTTATGGCACTTTTGCTTCCGGAGGTTGTGATGGTTTCG 790
Query 961 TCAACATTTGGGATGGTAACAACAAGAAGAGGCTATATCAGTACTCAAAGTATCCAACGA 1020
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 791 TCAACATTTGGGATGGTAACAACAAGAAGAGGCTATATCAGTACTCTAAGTATCCAACAA 850
Query 1021 GTATCT-CGGCACTGTCATTCAGTCGAGATGGTCAGCTG-CTGGCTGTTGCTTCAAGTTA 1078
|||| | |||| ||||||||||| ||||||||| | | |||||||||||||| |||||
Sbjct 851 GTAT-TGCGGCGCTGTCATTCAGCCGAGATGGTG-GATTACTGGCTGTTGCTTCTAGTTA 908
Query 1079 CACATTTGAAGAGGGAGAGAAATCGCAAGAACCGGAGGCCATCTTTGTAAGAAGCGTGAA 1138
||| |||||||||||||| ||| |||| ||||| || ||||||||||| |||| || ||
Sbjct 909 CACGTTTGAAGAGGGAGACAAACCGCATGAACCAGACGCCATCTTTGTTCGAAGTGTTAA 968
Query 1139 TGAAATCGAAGTGAAACCAAAACCGAAAGTATACCCGAATCCT 1181
|||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 969 TGAAATCGAAGTGAAACCAAAACCCAAAGTATACCCCAATCCT 1011
> Ahg949834 jgi|Araly1|949834|scaffold_801721.1
Length=270
Score = 139 bits (75), Expect = 5e-32
Identities = 101/112 (90%), Gaps = 7/112 (6%)
Strand=Plus/Plus
Query 146 TTTGTGATCTTCAACGGGAAAAATGACGACTGT-GACTCCGTCCGCCGGTCGTGAGCTCT 204
|||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 1 TTTGTGATCTTCAACGGGAAAAAT---GACT-TCAACTCCGTCCGCCGGTCGTGAGCTCT 56
Query 205 CGAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAACA-GTG 255
|||||||||||||||||||| |||| |||||||||||||| | ||||| |||
Sbjct 57 CGAATCCGCCGTCCGACGGCTTTTCCAATCTCCGATTTTCCA-TAACACGTG 107
Score = 134 bits (72), Expect = 2e-30
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 285 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGAGAGTTCTTACATGGCGGA 344
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 104 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGGGAGTTCTTACATGGCGGA 163
Query 345 GCAGTACTCGATTGCTGT 362
||||| ||||||||||||
Sbjct 164 GCAGTGCTCGATTGCTGT 181
> Ahg950601 jgi|Araly1|950601|scaffold_802488.1
Length=270
Score = 134 bits (72), Expect = 2e-30
Identities = 100/112 (89%), Gaps = 7/112 (6%)
Strand=Plus/Plus
Query 146 TTTGTGATCTTCAACGGGAAAAATGACGACTGT-GACTCCGTCCGCCGGTCGTGAGCTCT 204
|||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 1 TTTGTGATCTTCAACGGGAAAAAT---GACT-TCAACTCCGTCCGCCGGTCGTGAGCTCT 56
Query 205 CGAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAACA-GTG 255
||||||||||||||| |||| |||| |||||||||||||| | ||||| |||
Sbjct 57 CGAATCCGCCGTCCGTCGGCTTTTCCAATCTCCGATTTTCCA-TAACACGTG 107
Score = 128 bits (69), Expect = 1e-28
Identities = 75/78 (96%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 285 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGAGAGTTCTTACATGGCGGA 344
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 104 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGGGAGTTCTTACATGGCGGA 163
Query 345 GCAGTACTCGATTGCTGT 362
| ||| ||||||||||||
Sbjct 164 GTAGTGCTCGATTGCTGT 181
> Ahg927684 jgi|Araly1|927684|scaffold_300141.1
Length=270
Score = 134 bits (72), Expect = 2e-30
Identities = 76/78 (97%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 285 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGAGAGTTCTTACATGGCGGA 344
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 104 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGGGAGTTCTTACATGGCGGA 163
Query 345 GCAGTACTCGATTGCTGT 362
||||| ||||||||||||
Sbjct 164 GCAGTGCTCGATTGCTGT 181
> Ahg951975 jgi|Araly1|951975|scaffold_27900002.1
Length=270
Score = 128 bits (69), Expect = 1e-28
Identities = 75/78 (96%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 285 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGAGAGTTCTTACATGGCGGA 344
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 104 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGGGAGTTCTTACATGGCGGA 163
Query 345 GCAGTACTCGATTGCTGT 362
| ||| ||||||||||||
Sbjct 164 GTAGTGCTCGATTGCTGT 181
Score = 122 bits (66), Expect = 5e-27
Identities = 98/112 (88%), Gaps = 7/112 (6%)
Strand=Plus/Plus
Query 146 TTTGTGATCTTCAACGGGAAAAATGACGACTGT-GACTCCGTCCGCCGGTCGTGAGCTCT 204
|||||||| ||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 1 TTTGTGATTTTCAACGGGAAAAAT---GACT-TCAACTCCGTCCGCCGGTCGTGAGCTCT 56
Query 205 CGAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAACA-GTG 255
||||||||||||||| |||| |||| ||||||| |||||| | ||||| |||
Sbjct 57 CGAATCCGCCGTCCGTCGGCTTTTCCAATCTCCAATTTTCCA-TAACACGTG 107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5