BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19590.1 Length=1409 Score E Sequences producing significant alignments: (Bits) Value Ahg929856 jgi|Araly1|929856|scaffold_302313.1 1759 0.0 Ahg474121 jgi|Araly1|474121|fgenesh2_kg.1__4075__AT1G49910.1 1098 0.0 Ahg949834 jgi|Araly1|949834|scaffold_801721.1 139 5e-32 Ahg950601 jgi|Araly1|950601|scaffold_802488.1 134 2e-30 Ahg927684 jgi|Araly1|927684|scaffold_300141.1 134 2e-30 Ahg951975 jgi|Araly1|951975|scaffold_27900002.1 128 1e-28 > Ahg929856 jgi|Araly1|929856|scaffold_302313.1 Length=1065 Score = 1759 bits (952), Expect = 0.0 Identities = 1031/1069 (96%), Gaps = 5/1069 (0%) Strand=Plus/Plus Query 146 TTTGTGATCTTCAACGGGAAAAATGACGACTGTGACTCCGTCCGCCGGTCGTGAGCTCTC 205 ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1 TTTGTGATCTTCAACGGGAAAAATGACTAC---GACTCCGTCCGCCGGTCGTGAGCTCTC 57 Query 206 GAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAACAGTGATCATCTCCT 265 ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| Sbjct 58 GAATCCGCCGTCCGACGGCTTTTCCAATCTCCGATTTTCCAATAACAGTGATCATCTCCT 117 Query 266 CGTTTCTTCATGGGATAAGCGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGG 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 CGTTTCTTCATGGGATAAGCGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGG 177 Query 326 AGAGTTCTTACATGGCGGAGCAGTACTCGATTGCTGTTTTCACGATGACTTCTCCGGCTT 385 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 178 GGAGTTCTTACATGGCGGAGCAGTGCTCGATTGCTGTTTTCACGATGATTTCTCCGGCTT 237 Query 386 CAGTGTTGGCGCTGATTACAAAGTCCGACGGATTGTATTCAATGTCGGCAAAGAGGACAT 445 |||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 238 CAGTGTTGGCGCCGATTACAAAGTCAGAAGGATTGTATTCAATGTCGGCAAAGAGGACAT 297 Query 446 TTTGGGGACACATGACAAAGCAGTGCGATGTGTTGAGTATTCTTACGCTGC-GGGACAAG 504 ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||| Sbjct 298 TTTGGGGACACATGACAAACCAGTGCGATGTGTTGAGTATTCTTATGCTGCAGGG-CAAG 356 Query 505 TGATCACTGGATCTTGGGATAAAACAGTTAAATGTTGGGATCCAAGAGGCGCTAGTGGGC 564 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 357 TGATCACTGGATCTTGGGATAAAACAGTTAAATGTTGGGATCCAAGAGGCGCAAGTGGGC 416 Query 565 CTGAACGCACCCAAGTGGGAACATATTTGCAACCAGAACGTGTTTACTCTATGTCTCTTG 624 ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 417 CTGAACGCACCCAGGTGGGAACATATTTGCAGCCAGAGCGTGTTTACTCTATGTCTCTTG 476 Query 625 TTGGACATCGTTTGGTAGTGGCTACAGCAGGAAGGCATGTAAACATCTATGATCTCAGAA 684 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 477 TTGGACATCGTTTGGTAGTGGCAACAGCAGGAAGGCATGTAAACATCTATGATCTCAGAA 536 Query 685 ATATGTCTCAGCCTGAGCAAAGAAGGGAGTCTTCACTGAAATACCAGACGAGATGTGTGC 744 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 537 ATATGTCTCAGCCTGAGCAAAGAAGAGAGTCTTCACTGAAATACCAGACGAGATGTGTGC 596 Query 745 GTTGTTATCCTAATGGAACAGGCTATGCTCTTAGCTCTGTTGAAGGAAGGGTTGCAATGG 804 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 597 GTTGTTATCCTAATGGAACAGGATATGCTCTTAGCTCTGTTGAAGGAAGGGTTGCTATGG 656 Query 805 AGTTTTTTGATCTGTCAGAGGCTGCTCAAGCTAAAAAATATGCTTTCAAATGTCATCGGA 864 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 657 AGTTTTTTGATCTGTCAGAAGCTGCTCAAGCTAAAAAATATGCTTTCAAATGTCATCGGA 716 Query 865 AATCAGAGGCTGGAAGGGACATTGTTTACCCTGTAAATTCCATTGCCTTCCATCCAATCT 924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 AATCAGAGGCTGGAAGGGACATTGTTTACCCTGTAAATTCCATTGCCTTCCATCCAATCT 776 Query 925 ATGGCACCTTTGCAACTGGAGGCTGTGATGGTTTCGTCAACATTTGGGATGGTAACAACA 984 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 777 ATGGCACCTTTGCAACTGGAGGTTGTGATGGTTTCGTCAACATTTGGGATGGTAACAACA 836 Query 985 AGAAGAGGCTATATCAGTACTCAAAGTATCCAACGAGTATCTCGGCACTGTCATTCAGTC 1044 |||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||| Sbjct 837 AGAAGAGGTTATATCAGTATTCAAAGTATCCAACAAGTATCTCGGCACTGTCGTTCAGTC 896 Query 1045 GAGATGGTCAGCTGCTGGCTGTTGCTTCAAGTTACACATTTGAAGAGGGAGAGAAATCGC 1104 ||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 897 GAGATGGTCAGCTACTGGCTGTTGCTTCAAGTTACACGTTTGAAGAGGGGGAGAAATCGC 956 Query 1105 AAGAACCGGAGGCCATCTTTGTAAGAAGCGTGAATGAAATCGAAGTGAAACCAAAACCGA 1164 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 957 AAGAACCAGAGGCCATCTTTGTAAGAAGCGTGAACGAAATCGAAGTGAAACCAAAACCCA 1016 Query 1165 AAGTATACCCGAATCCTGCGGCGTAGAAAGGAAGAAACACAAGTTATTT 1213 |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1017 AAGTATACCCGAATCCTGCGGCCTAGAAAGGAAGAAACACAAGTTATTT 1065 > Ahg474121 jgi|Araly1|474121|fgenesh2_kg.1__4075__AT1G49910.1 Length=1205 Score = 1098 bits (594), Expect = 0.0 Identities = 871/1003 (87%), Gaps = 26/1003 (3%) Strand=Plus/Plus Query 192 GGTCGTGAGCTCTCGAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAAC 251 ||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||| | Sbjct 22 GGTCGCGAGCTCTCGAATCCGCCGTCCGATGGGATTTCTAATCTCCGATTTTCCAATAGC 81 Query 252 AGTGATCATCTCCTCGTTTCTTCATGGGATAAGCGTGTGAGATTGTATGATGTGAGCACC 311 || |||||| | | || ||||||||||| ||| |||| ||||||||||||| || | || Sbjct 82 AGCGATCATTTAATAGTCTCTTCATGGGACAAGAGTGTAAGATTGTATGATGCGAACGCC 141 Query 312 AATTCGTTGAAAGGAGAGTTCTTA-CATGGCGGAGCAGTACTCGATTGCTGTTTTCACGA 370 ||| | ||| ||| |||||| | ||||| ||||| |||||||||||||| || || || Sbjct 142 GATTTGATGAGAGGGGAGTTC-AAGCATGGAGGAGCGGTACTCGATTGCTGCTTCCATGA 200 Query 371 TGACTTC-TCCGGCTTCAGTGTTGGCGCTGATTAC-AAAGTCCGACGGATTGTA-TTCAA 427 ||| ||| || || ||||||||| |||| || ||| |||||| |||| |||| | ||||| Sbjct 201 TGA-TTCTTCTGGATTCAGTGTTTGCGCCGA-TACTAAAGTCAGACGAATTG-ACTTCAA 257 Query 428 TGTC-GGCAAAGAGGACATTTTGGGGACACATGACAAAGCAGTGCGATGTGTTGAGTATT 486 || | |||||||||||| |||||||||| ||||| ||| |||| |||||||||||||||| Sbjct 258 TG-CTGGCAAAGAGGACGTTTTGGGGACGCATGATAAACCAGTTCGATGTGTTGAGTATT 316 Query 487 CTTACGCTGC-GGGACAAGTGATCACTGGATCTTGGGATAAAAC-AGTTAAATGTTGGGA 544 |||| ||||| ||| ||||||||||||||| |||||||||||| | ||||||||||||| Sbjct 317 CTTATGCTGCAGGG-CAAGTGATCACTGGAAGTTGGGATAAAACTA-TTAAATGTTGGGA 374 Query 545 TCCAAGAGGCGCTAGTGGGCCT-GAACGCACCCA-AGTGGGAACATATTTGCAACCAGAA 602 ||||||||| || |||||| || || || || || | | || |||||| |||||| || Sbjct 375 TCCAAGAGGTGCAAGTGGG-CTGGAGCGTACACATA-TTGGTACATATCAGCAACCTGAG 432 Query 603 CGTGTTTACTCTATGTCTCTTGTTGGACATCGTTTGGTAGTGGCTACAGCAGGAAGGCAT 662 |||||| ||||| | ||| | |||||| |||||||||| ||||| ||||||||||||||| Sbjct 433 CGTGTTAACTCTCTTTCTGTAGTTGGAAATCGTTTGGTGGTGGCAACAGCAGGAAGGCAT 492 Query 663 GTAAACATCTATGATCTCAGAAATATGTCTCAGCCTGAGCAAAGAAGGGAGTCTTCACTG 722 || ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 493 GTCAACATTTATGATCTCAGAAATATGTCTCAGCCTGAGCAAAGAAGAGAGTCCTCACTT 552 Query 723 AAATACCAGACGAGATGTGTGCGTTGTTATCCTAATGGAACAGGCTATGCTCTTAGCTCT 782 ||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||| Sbjct 553 AAATACCAGACAAGATGTGTGCGTTGTTATCCCAATGGAACAGGATATGCCCTTAGCTCT 612 Query 783 GTTGAAGGAAGGGTTG-CAATGGAGTTTTTTGATCTG-TCAGAGGCTGCTCAAGCTAAAA 840 |||||||| |||| || |||||||||| ||||||| | ||||| |||||||||||||||| Sbjct 613 GTTGAAGGGAGGG-TGTCAATGGAGTTCTTTGATC-GATCAGAAGCTGCTCAAGCTAAAA 670 Query 841 AATATGCTTTCAAATGTCATCGGAAATCAGAGGCTGGAAGGGACATTGTTTACCCTGTAA 900 ||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||| Sbjct 671 AATATGCTTTCAAATGTCACCGGAAATCAGAGGATGGAAGGGACATTGTCTACCCTGTAA 730 Query 901 ATTCCATTGCCTTCCATCCAATCTATGGCACCTTTGCAACTGGAGGCTGTGATGGTTTCG 960 || | ||||| |||||||| || |||||||| ||||| | ||||| ||||||||||||| Sbjct 731 ATGCAATTGCTTTCCATCCGATTTATGGCACTTTTGCTTCCGGAGGTTGTGATGGTTTCG 790 Query 961 TCAACATTTGGGATGGTAACAACAAGAAGAGGCTATATCAGTACTCAAAGTATCCAACGA 1020 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 791 TCAACATTTGGGATGGTAACAACAAGAAGAGGCTATATCAGTACTCTAAGTATCCAACAA 850 Query 1021 GTATCT-CGGCACTGTCATTCAGTCGAGATGGTCAGCTG-CTGGCTGTTGCTTCAAGTTA 1078 |||| | |||| ||||||||||| ||||||||| | | |||||||||||||| ||||| Sbjct 851 GTAT-TGCGGCGCTGTCATTCAGCCGAGATGGTG-GATTACTGGCTGTTGCTTCTAGTTA 908 Query 1079 CACATTTGAAGAGGGAGAGAAATCGCAAGAACCGGAGGCCATCTTTGTAAGAAGCGTGAA 1138 ||| |||||||||||||| ||| |||| ||||| || ||||||||||| |||| || || Sbjct 909 CACGTTTGAAGAGGGAGACAAACCGCATGAACCAGACGCCATCTTTGTTCGAAGTGTTAA 968 Query 1139 TGAAATCGAAGTGAAACCAAAACCGAAAGTATACCCGAATCCT 1181 |||||||||||||||||||||||| ||||||||||| |||||| Sbjct 969 TGAAATCGAAGTGAAACCAAAACCCAAAGTATACCCCAATCCT 1011 > Ahg949834 jgi|Araly1|949834|scaffold_801721.1 Length=270 Score = 139 bits (75), Expect = 5e-32 Identities = 101/112 (90%), Gaps = 7/112 (6%) Strand=Plus/Plus Query 146 TTTGTGATCTTCAACGGGAAAAATGACGACTGT-GACTCCGTCCGCCGGTCGTGAGCTCT 204 |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| Sbjct 1 TTTGTGATCTTCAACGGGAAAAAT---GACT-TCAACTCCGTCCGCCGGTCGTGAGCTCT 56 Query 205 CGAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAACA-GTG 255 |||||||||||||||||||| |||| |||||||||||||| | ||||| ||| Sbjct 57 CGAATCCGCCGTCCGACGGCTTTTCCAATCTCCGATTTTCCA-TAACACGTG 107 Score = 134 bits (72), Expect = 2e-30 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 285 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGAGAGTTCTTACATGGCGGA 344 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 104 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGGGAGTTCTTACATGGCGGA 163 Query 345 GCAGTACTCGATTGCTGT 362 ||||| |||||||||||| Sbjct 164 GCAGTGCTCGATTGCTGT 181 > Ahg950601 jgi|Araly1|950601|scaffold_802488.1 Length=270 Score = 134 bits (72), Expect = 2e-30 Identities = 100/112 (89%), Gaps = 7/112 (6%) Strand=Plus/Plus Query 146 TTTGTGATCTTCAACGGGAAAAATGACGACTGT-GACTCCGTCCGCCGGTCGTGAGCTCT 204 |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| Sbjct 1 TTTGTGATCTTCAACGGGAAAAAT---GACT-TCAACTCCGTCCGCCGGTCGTGAGCTCT 56 Query 205 CGAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAACA-GTG 255 ||||||||||||||| |||| |||| |||||||||||||| | ||||| ||| Sbjct 57 CGAATCCGCCGTCCGTCGGCTTTTCCAATCTCCGATTTTCCA-TAACACGTG 107 Score = 128 bits (69), Expect = 1e-28 Identities = 75/78 (96%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 285 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGAGAGTTCTTACATGGCGGA 344 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 104 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGGGAGTTCTTACATGGCGGA 163 Query 345 GCAGTACTCGATTGCTGT 362 | ||| |||||||||||| Sbjct 164 GTAGTGCTCGATTGCTGT 181 > Ahg927684 jgi|Araly1|927684|scaffold_300141.1 Length=270 Score = 134 bits (72), Expect = 2e-30 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 285 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGAGAGTTCTTACATGGCGGA 344 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 104 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGGGAGTTCTTACATGGCGGA 163 Query 345 GCAGTACTCGATTGCTGT 362 ||||| |||||||||||| Sbjct 164 GCAGTGCTCGATTGCTGT 181 > Ahg951975 jgi|Araly1|951975|scaffold_27900002.1 Length=270 Score = 128 bits (69), Expect = 1e-28 Identities = 75/78 (96%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 285 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGAGAGTTCTTACATGGCGGA 344 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 104 CGTGTGAGATTGTATGATGTGAGCACCAATTCGTTGAAAGGGGAGTTCTTACATGGCGGA 163 Query 345 GCAGTACTCGATTGCTGT 362 | ||| |||||||||||| Sbjct 164 GTAGTGCTCGATTGCTGT 181 Score = 122 bits (66), Expect = 5e-27 Identities = 98/112 (88%), Gaps = 7/112 (6%) Strand=Plus/Plus Query 146 TTTGTGATCTTCAACGGGAAAAATGACGACTGT-GACTCCGTCCGCCGGTCGTGAGCTCT 204 |||||||| ||||||||||||||| |||| | ||||||||||||||||||||||||| Sbjct 1 TTTGTGATTTTCAACGGGAAAAAT---GACT-TCAACTCCGTCCGCCGGTCGTGAGCTCT 56 Query 205 CGAATCCGCCGTCCGACGGCATTTCTAATCTCCGATTTTCTAATAACA-GTG 255 ||||||||||||||| |||| |||| ||||||| |||||| | ||||| ||| Sbjct 57 CGAATCCGCCGTCCGTCGGCTTTTCCAATCTCCAATTTTCCA-TAACACGTG 107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52678808835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5