BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19595.1
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318714 jgi|Araly1|318714|fgenesh1_pm.C_scaffold_3001730 1262 0.0
Ahg930830 jgi|Araly1|930830|scaffold_303287.1 802 0.0
> Ahg318714 jgi|Araly1|318714|fgenesh1_pm.C_scaffold_3001730
Length=1779
Score = 1262 bits (683), Expect = 0.0
Identities = 796/851 (94%), Gaps = 5/851 (1%)
Strand=Plus/Plus
Query 1 ATGTCTGTAGTTGAGAATTTTTCTTCGGAACCAAAAGCCAAAAGACGAAAGATCGAACCA 60
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 898 ATGTCTGTAGTTGAGAATTTTTCTTCGGAACCGCAAGCCAAAAGACAAAAGATCGAACCA 957
Query 61 ACGATCAACGAGTCCTCTTCATCGTTATCCTCTTCTAGTAGTTGTGGTCACTGGTACATC 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 958 AAGATCAACGAGTCCTCTTCATCGTTATCCTCTTCTAGTAGTTGTGGTCACTGGTACGTT 1017
Query 121 TGTCACGGAATCTGCATCGGCTGCAAATCGACTGTGaaaaaaaGCCAAGGCCGAGCATTC 180
| ||||||||||||||||| ||||||||| || ||||| |||||||||||||||||||||
Sbjct 1018 TTTCACGGAATCTGCATCGCCTGCAAATCAACAGTGAATAAAAGCCAAGGCCGAGCATTC 1077
Query 181 GATTATATTTTCGACGGTTTACAACTAAGCCACGAAGCTGTGGCGTTAACCAAGTGCTTT 240
|||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1078 GATTATATTTTCAACGGTTTGCAGCTAAGCCACGAAGCTGTGGCGTTAACCAAGTGCTTT 1137
Query 241 ACAACGAAATTATCTTGTCTCAACGAGAAGAAGCTTCACCTTGTACTTGACTTGGACCAC 300
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1138 ACAACGAAATTCTCTTGTCTCAACGACAAGAAGCTTCACCTTGTACTTGACTTGGACCAC 1197
Query 301 ACGCTTCTCCATACTGTTATGGTTCCAAGTCTCTCCCAAGCAGAGAAGTATCTAATCGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1198 ACGCTTCTCCATACTGTTATGGTTCCAAGTCTCTCCCAAGCAGAGAAGTATCTCCTCGAA 1257
Query 361 GAAGCGGGTTCAGCAACAAGGGATGATTTATGGAAGATCAAAGCCGTAGGAGATCCCATG 420
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 1258 GAAGCGGGTTCAGCAACAAGGGAAGATTTATGGAAGATCAAAGCCATAGGAGATCCAATG 1317
Query 421 GAATTTTTGACAAAGCTACGACCTTTTCTTCGCGACTTCTTGAAAGAAGCCAACGAGTTT 480
||||| |||||||||||| |||||||| |||| || |||||||||||||||||| || |
Sbjct 1318 GAATTCTTGACAAAGCTAAGACCTTTTGTTCGTGAATTCTTGAAAGAAGCCAACCAGATG 1377
Query 481 TTCACCATGTATGTTTACACTAAGGGTAGTCGTGTATACGCTAAACAAGTCTTGGAGCTG 540
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 1378 TTCACCATGTATGTTTACACTAAGGGTAGTCGCGGATATGCTAAACAAGTCTTGGAGCTG 1437
Query 541 ATTGATCCAAAGAAACTTTATTTTGGAG-ATAGAGTGATAACAAAAACCGAGAGTCCTCA 599
||||||||||||||||||||||||| || |||||||||||||||||| |||| |||||
Sbjct 1438 ATTGATCCAAAGAAACTTTATTTTG-AGGATAGAGTGATAACAAAAAACGAGTCCCCTCA 1496
Query 600 TATGAAGACACTTGATTTCGTTTTGGCTGAGGAGCGTGGGGTGGTGATTGTGGATGATAC 659
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1497 TATGAAGACACTTGATTTGGTTTTGGCTGAGGAGCGTGGGGTGGTGATTGTGGACGATAT 1556
Query 660 GCGTAACGTTTGGCCTGATCACAAGAGTAACCTAGTGGATATAAGCAAGTACAGCTATTT 719
||||| ||||||||| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1557 GCGTACCGTTTGGCCCGATCACAAGAGTAACCTAGTGGATATTAGCAAGTACACCTATTT 1616
Query 720 CAGACTCAAAGGCCAAGACTCAATGCCTTACTCTGAGGAGAAGACAGACGAGAGTGAAAG 779
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1617 CAGACTCAAAGGCCAAGAGTCAATGCCTTACTCTGAGGAGATGACAGACGAGAGTGAAAG 1676
Query 780 CGAAGGTGGATTGGCGAATGTTTTGAAACTACTCAAGGAAGTTCACCAA-AGATTCTTCA 838
||| ||||||||||| |||||||||||| |||| |||||||||||| | ||||||||||
Sbjct 1677 CGACGGTGGATTGGCCAATGTTTTGAAATTACTTAAGGAAGTTCAC-AGTAGATTCTTCA 1735
Query 839 GAGTCGA-GGA 848
||||||| |||
Sbjct 1736 GAGTCGAAGGA 1746
Score = 699 bits (378), Expect = 0.0
Identities = 747/912 (82%), Gaps = 78/912 (9%)
Strand=Plus/Plus
Query 1 ATGTCTGTAGTTGAGAATTTTTCTTCGGAACCAAAAGCCAAAAGACGA-AAGATCGA-AC 58
|||||||||| | | ||| ||||| |||||| | || ||||||| | | |||| | | ||
Sbjct 1 ATGTCTGTAGCTAAAAATCTTTCTCCGGAACGAGAATCCAAAAGGC-AGAAGAAC-ATAC 58
Query 59 CA-ACGATCAACGAGTCCTC--TT-CATCGTTATCCTCTTCTAG-TAGTTGTGGTCACTG 113
|| | ||||| || |||| || ||| ||| | ||| || | || |||||||||||
Sbjct 59 CAGA-GATCATGGAACCCTCGTTTCCATTGTTGT-CTC--CT-GATAACTGTGGTCACTG 113
Query 114 GTACA-TCTGTCACGGAATCTGCATCGGCTGCAAATCGACTGT-Ga-aaaaa-aGCCAAG 169
||||| || |||| ||| ||||||||| |||||||| || || || ||||| | |||||
Sbjct 114 GTACATTC-GTCATGGAGTCTGCATCGTATGCAAATCAACGGTGGACAAAAATATCCAAG 172
Query 170 GCCGAGCATTCGATTATATTTTCGACGGTTTACAACTAAGCCA-CGAAGCTGTGGCGTTA 228
||| | | | |||||||||||||||| ||||| || ||| ||| | ||||||
Sbjct 173 GCC--G-A---G------TTTTCGACGGTTTACAGCTAAG-CAGCGAGGCTTTAGCGTTA 219
Query 229 ACCAAGTGCT-TTACAACGAAATTATCTTGTCTCAACGA-GAAGAAGCTTCACCTTGTAC 286
|| ||| | | | ||||||||||| |||||||||||| | |||||||||||||||||| |
Sbjct 220 ACGAAGCG-TCTCACAACGAAATTCTCTTGTCTCAAC-ATGAAGAAGCTTCACCTTGTCC 277
Query 287 TTGACTTGGACCACACGCTTCTCCA-TACTGTTATGGTTCCAA-GTCTCTCCCAAGCAGA 344
||||||||||||||||||||||||| | | |||| |||| ||| ||||||| | |||||
Sbjct 278 TTGACTTGGACCACACGCTTCTCCACT-CCGTTAGGGTT-CAATTTCTCTCCGATGCAGA 335
Query 345 GAAGTATCTAATCGAAGAAGCGGGTTCAGCAACAAGGGATGATTTATGGAAGATCAAAGC 404
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||
Sbjct 336 GAAGTATCTAATCGAAGAAGCGGGTTCAACAACAAGGGAAGATCTATGGAAGATGAAAGT 395
Query 405 CGTAGGAGATCCCATGG--A-A----TT---T--TTGACAAAGCTACGACCTTTTCTTCG 452
| |||||||||||| | | || | |||||||||||||| |||||||||||
Sbjct 396 CAAAGGAGATCCCATACCCATAACCATTGAATACTTGACAAAGCTACGGCCTTTTCTTCG 455
Query 453 CGACTTCTTGAAAGAAGCCAACGAGTTTTTCACCATGTATGTTTACACTAAGGGTAGTCG 512
||| |||||||||||||||||| || | ||||| |||||||||||||| ||||||| |||
Sbjct 456 CGAGTTCTTGAAAGAAGCCAACAAGCTGTTCACGATGTATGTTTACACAAAGGGTACTCG 515
Query 513 T-GTATACGCTAAA-CAAGTCTTGGAGCTGATTGATCCAAAGAAACTTTATTTTGGAG-A 569
|| ||||||||| | | | ||| |||||||||||||||||||||| |||||||| | |
Sbjct 516 CCGT-TACGCTAAAGCCATT-TTGAAGCTGATTGATCCAAAGAAACTCTATTTTGG-GCA 572
Query 570 TAGAGTGATAACAA-AAACCGAGAGTCCTCATATGAAGACACTTGATTTCGTTTTGGCTG 628
|||||||||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 573 TAGAGTGATAACAAGAAAT-GAGAGTCCTCATACGAAGACACTTGATTTGGTTTTGGCTG 631
Query 629 AGGAGCGTGGGGTGGTGATTGTGGATGATACGCGTAACGTTTGGCCTGATCACAAGAGTA 688
| || ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 632 ATGAACGTGGAGTGGTGATTGTGGATGATACGCGTAATATTTGGCCCAATCACAAGAGTA 691
Query 689 ACCTAGTGGAT-ATAAGCAAGTACA-GCTATTTCAGACTCAAAGGCCAAGACTCAA-TGC 745
||||||||| | || ||||||||| | ||||||||| || |||||| || | || | |
Sbjct 692 ACCTAGTGG-TGATTGGCAAGTACAAG-TATTTCAGATTCGAAGGCCGAGTGTTAAAT-C 748
Query 746 CTTACTCTGAGGAGAAGAC-A--GACGAGAGTGAAAGCGAA-GGTGGATTGGCGAATGTT 801
|| |||||||||| ||||| | ||||||||||||| | || ||||||||||| ||||||
Sbjct 749 CTCACTCTGAGGAAAAGACGACAGACGAGAGTGAAAAC-AACGGTGGATTGGCCAATGTT 807
Query 802 TTGAAACTACTCAAGGAAGTTCACCA-AAGATTCTTCAGAGTCGAGGAAGAA-TTGGAGT 859
|||||| |||||||||||||||||| || ||||||||| ||||||||||| ||| |||
Sbjct 808 TTGAAATTACTCAAGGAAGTTCACCGTAA-ATTCTTCAGGGTCGAGGAAGAGGTTG-AGT 865
Query 860 CGA-AGGACGTT 870
| | ||||||||
Sbjct 866 C-ACAGGACGTT 876
> Ahg930830 jgi|Araly1|930830|scaffold_303287.1
Length=904
Score = 802 bits (434), Expect = 0.0
Identities = 721/854 (84%), Gaps = 41/854 (5%)
Strand=Plus/Plus
Query 96 TAGTAGTTGTGGTCACTGGTAC-ATCTGTCACGGAATCTGCATCGGCTGCAAATCGACT- 153
|||| ||||||||||||||||| | | ||| ||| ||||||||||||||||||| | |
Sbjct 45 TAGTTGTTGTGGTCACTGGTACGGT-TTTCATGGAGTCTGCATCGGCTGCAAATC-AATA 102
Query 154 GTGaaaaaaaGCCAA-GGCCGAGCATTCGATTATATTTTCGACGGTTTACAACTAAGCCA 212
||| | ||||||||| || |||||||| |||||||||||| |||||||||| ||||||||
Sbjct 103 GTGCACAAAAGCCAATGG-CGAGCATTTGATTATATTTTCAACGGTTTACAGCTAAGCCA 161
Query 213 CGAAGCTGTGGCGTTAACCAAGTGCTTTACAACGAAATTA-TCTTGTCTCAACGAGAAGA 271
|||||||||||| |||||||||| | ||||| |||| | |||||||||||||||||||
Sbjct 162 CGAAGCTGTGGCATTAACCAAGTCCCGCACAAC-AAATAACTCTTGTCTCAACGAGAAGA 220
Query 272 AGCTTCACCTTGTACTTGACTTGGACCACACGCTTCTCCATACTG-TTATGGTTCCAAGT 330
| ||||||||||| |||||||||||||||||||||||||| | || | ||||||| ||
Sbjct 221 AACTTCACCTTGTCCTTGACTTGGACCACACGCTTCTCCACA-TGAAAAAGGTTCCATGT 279
Query 331 CTCTCCCAAGCAGAGAAGTATCTAATCGAAGAAGCGGGTTCAGCAACAAGGGATGATTTA 390
||||||| |||||||| |||||||||| ||||||| |||||| ||||||||| ||| ||
Sbjct 280 CTCTCCCGAGCAGAGATGTATCTAATCCAAGAAGCATGTTCAGTAACAAGGGAAGATATA 339
Query 391 TGGAAGATCAAAG-C-CGTAGGAGATCCCATGGAAT-TTTTGACAAAGCTACGACCTTTT 447
||||| || ||| | | ||||||||||||| | || |||| |||||||||||| |||
Sbjct 340 TGGAAAAT--AAGACTCCTAGGAGATCCCATAG-ATCGCTTGATAAAGCTACGACCCTTT 396
Query 448 CTTCGCGACTTCTTGAAAGAAGCCAACGAGTTTTTCACCATGTATGTTTACACTAAGGGT 507
||||||||||||||||||||||||| ||| | ||||| |||||||||||||| ||||||
Sbjct 397 GTTCGCGACTTCTTGAAAGAAGCCAATGAGATGTTCACAATGTATGTTTACACAAAGGGT 456
Query 508 AGTCGTGTATACGCTAAA-CAAGTCTTGGAGCTGATTGATCCAAAGAAACTTTATTTTGG 566
| ||| |||||||||| | |||||||||||||||||||| || | ||| ||||||||
Sbjct 457 ACTCGCAAATACGCTAAAGC-TGTCTTGGAGCTGATTGATCCTAATAGACTCTATTTTGG 515
Query 567 AGATAGAGTGATAACAAAA-ACCGAGAGTCCTCAT-ATGAAGACACTTGATTTCGTTTTG 624
||||||||||| |||||| | ||||||||||||| | |||||| |||||||| ||||||
Sbjct 516 TGATAGAGTGATTACAAAAGA-CGAGAGTCCTCATCA-GAAGACGCTTGATTTGGTTTTG 573
Query 625 GCTGAGGAGCGTGGGGTGGTGATTGTGGATGATACGCGTAACGTTTGGCCTGATCACAAG 684
|||||||||||||||||||||||||| ||||||| |||| | ||||||| ||||||||
Sbjct 574 GCTGAGGAGCGTGGGGTGGTGATTGTTGATGATAGGCGTGATATTTGGCCCCATCACAAG 633
Query 685 AGTAACCTAGTGGATATAAGCAAGTACA-GCTATTTCAGACTCAAAGGCCAAGACTCAA- 742
||||||||| | || || |||||||||| | ||||||||| ||| ||||||| ||||
Sbjct 634 AGTAACCTAATAGAGATTAGCAAGTACAAG-TATTTCAGAGTCAGTGGCCAAGGGTCAAA 692
Query 743 TGCCTTACTCTGAGGAGAAGACAGACGAGAGTGAAAGCGAAGGTGGATTGGCGAATGTTT 802
| | |||||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 693 TTC-TTACTCTGAGAAGAAGACAGACGAGAGTGAAAAAGACGGTGGATTGGCGAATGTTT 751
Query 803 TGAAACTACTCAAGGAAGTTCACCAAAGATTCTTCA-GAGTCGAGGA--AGAAT-TGGAG 858
| ||| ||||||| |||||||| |||||||||| | |||||||| |||| |||||
Sbjct 752 TAAAATTACTCAAACAAGTTCACTGTAGATTCTTCATG-GTCGAGGAGGAGAAGCTGGAG 810
Query 859 TCGAA-GGACGTTAGGTCGCTGCTTCAAGAAATA------GACTTTGA-ACTCAACGTAG 910
|| || |||||| ||||||||||| |||||||| |||||||| || |||| ||
Sbjct 811 TC-AATGGACGTCAGGTCGCTGCTAAAAGAAATATATATAGACTTTGATAC-CAACCAAG 868
Query 911 AATCTGTAGAATGA 924
||||||||||||||
Sbjct 869 AATCTGTAGAATGA 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34272502383
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5