BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G19595.1 Length=924 Score E Sequences producing significant alignments: (Bits) Value Ahg318714 jgi|Araly1|318714|fgenesh1_pm.C_scaffold_3001730 1262 0.0 Ahg930830 jgi|Araly1|930830|scaffold_303287.1 802 0.0 > Ahg318714 jgi|Araly1|318714|fgenesh1_pm.C_scaffold_3001730 Length=1779 Score = 1262 bits (683), Expect = 0.0 Identities = 796/851 (94%), Gaps = 5/851 (1%) Strand=Plus/Plus Query 1 ATGTCTGTAGTTGAGAATTTTTCTTCGGAACCAAAAGCCAAAAGACGAAAGATCGAACCA 60 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 898 ATGTCTGTAGTTGAGAATTTTTCTTCGGAACCGCAAGCCAAAAGACAAAAGATCGAACCA 957 Query 61 ACGATCAACGAGTCCTCTTCATCGTTATCCTCTTCTAGTAGTTGTGGTCACTGGTACATC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 958 AAGATCAACGAGTCCTCTTCATCGTTATCCTCTTCTAGTAGTTGTGGTCACTGGTACGTT 1017 Query 121 TGTCACGGAATCTGCATCGGCTGCAAATCGACTGTGaaaaaaaGCCAAGGCCGAGCATTC 180 | ||||||||||||||||| ||||||||| || ||||| ||||||||||||||||||||| Sbjct 1018 TTTCACGGAATCTGCATCGCCTGCAAATCAACAGTGAATAAAAGCCAAGGCCGAGCATTC 1077 Query 181 GATTATATTTTCGACGGTTTACAACTAAGCCACGAAGCTGTGGCGTTAACCAAGTGCTTT 240 |||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1078 GATTATATTTTCAACGGTTTGCAGCTAAGCCACGAAGCTGTGGCGTTAACCAAGTGCTTT 1137 Query 241 ACAACGAAATTATCTTGTCTCAACGAGAAGAAGCTTCACCTTGTACTTGACTTGGACCAC 300 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1138 ACAACGAAATTCTCTTGTCTCAACGACAAGAAGCTTCACCTTGTACTTGACTTGGACCAC 1197 Query 301 ACGCTTCTCCATACTGTTATGGTTCCAAGTCTCTCCCAAGCAGAGAAGTATCTAATCGAA 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1198 ACGCTTCTCCATACTGTTATGGTTCCAAGTCTCTCCCAAGCAGAGAAGTATCTCCTCGAA 1257 Query 361 GAAGCGGGTTCAGCAACAAGGGATGATTTATGGAAGATCAAAGCCGTAGGAGATCCCATG 420 ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| Sbjct 1258 GAAGCGGGTTCAGCAACAAGGGAAGATTTATGGAAGATCAAAGCCATAGGAGATCCAATG 1317 Query 421 GAATTTTTGACAAAGCTACGACCTTTTCTTCGCGACTTCTTGAAAGAAGCCAACGAGTTT 480 ||||| |||||||||||| |||||||| |||| || |||||||||||||||||| || | Sbjct 1318 GAATTCTTGACAAAGCTAAGACCTTTTGTTCGTGAATTCTTGAAAGAAGCCAACCAGATG 1377 Query 481 TTCACCATGTATGTTTACACTAAGGGTAGTCGTGTATACGCTAAACAAGTCTTGGAGCTG 540 |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| Sbjct 1378 TTCACCATGTATGTTTACACTAAGGGTAGTCGCGGATATGCTAAACAAGTCTTGGAGCTG 1437 Query 541 ATTGATCCAAAGAAACTTTATTTTGGAG-ATAGAGTGATAACAAAAACCGAGAGTCCTCA 599 ||||||||||||||||||||||||| || |||||||||||||||||| |||| ||||| Sbjct 1438 ATTGATCCAAAGAAACTTTATTTTG-AGGATAGAGTGATAACAAAAAACGAGTCCCCTCA 1496 Query 600 TATGAAGACACTTGATTTCGTTTTGGCTGAGGAGCGTGGGGTGGTGATTGTGGATGATAC 659 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1497 TATGAAGACACTTGATTTGGTTTTGGCTGAGGAGCGTGGGGTGGTGATTGTGGACGATAT 1556 Query 660 GCGTAACGTTTGGCCTGATCACAAGAGTAACCTAGTGGATATAAGCAAGTACAGCTATTT 719 ||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |||||| Sbjct 1557 GCGTACCGTTTGGCCCGATCACAAGAGTAACCTAGTGGATATTAGCAAGTACACCTATTT 1616 Query 720 CAGACTCAAAGGCCAAGACTCAATGCCTTACTCTGAGGAGAAGACAGACGAGAGTGAAAG 779 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 1617 CAGACTCAAAGGCCAAGAGTCAATGCCTTACTCTGAGGAGATGACAGACGAGAGTGAAAG 1676 Query 780 CGAAGGTGGATTGGCGAATGTTTTGAAACTACTCAAGGAAGTTCACCAA-AGATTCTTCA 838 ||| ||||||||||| |||||||||||| |||| |||||||||||| | |||||||||| Sbjct 1677 CGACGGTGGATTGGCCAATGTTTTGAAATTACTTAAGGAAGTTCAC-AGTAGATTCTTCA 1735 Query 839 GAGTCGA-GGA 848 ||||||| ||| Sbjct 1736 GAGTCGAAGGA 1746 Score = 699 bits (378), Expect = 0.0 Identities = 747/912 (82%), Gaps = 78/912 (9%) Strand=Plus/Plus Query 1 ATGTCTGTAGTTGAGAATTTTTCTTCGGAACCAAAAGCCAAAAGACGA-AAGATCGA-AC 58 |||||||||| | | ||| ||||| |||||| | || ||||||| | | |||| | | || Sbjct 1 ATGTCTGTAGCTAAAAATCTTTCTCCGGAACGAGAATCCAAAAGGC-AGAAGAAC-ATAC 58 Query 59 CA-ACGATCAACGAGTCCTC--TT-CATCGTTATCCTCTTCTAG-TAGTTGTGGTCACTG 113 || | ||||| || |||| || ||| ||| | ||| || | || ||||||||||| Sbjct 59 CAGA-GATCATGGAACCCTCGTTTCCATTGTTGT-CTC--CT-GATAACTGTGGTCACTG 113 Query 114 GTACA-TCTGTCACGGAATCTGCATCGGCTGCAAATCGACTGT-Ga-aaaaa-aGCCAAG 169 ||||| || |||| ||| ||||||||| |||||||| || || || ||||| | ||||| Sbjct 114 GTACATTC-GTCATGGAGTCTGCATCGTATGCAAATCAACGGTGGACAAAAATATCCAAG 172 Query 170 GCCGAGCATTCGATTATATTTTCGACGGTTTACAACTAAGCCA-CGAAGCTGTGGCGTTA 228 ||| | | | |||||||||||||||| ||||| || ||| ||| | |||||| Sbjct 173 GCC--G-A---G------TTTTCGACGGTTTACAGCTAAG-CAGCGAGGCTTTAGCGTTA 219 Query 229 ACCAAGTGCT-TTACAACGAAATTATCTTGTCTCAACGA-GAAGAAGCTTCACCTTGTAC 286 || ||| | | | ||||||||||| |||||||||||| | |||||||||||||||||| | Sbjct 220 ACGAAGCG-TCTCACAACGAAATTCTCTTGTCTCAAC-ATGAAGAAGCTTCACCTTGTCC 277 Query 287 TTGACTTGGACCACACGCTTCTCCA-TACTGTTATGGTTCCAA-GTCTCTCCCAAGCAGA 344 ||||||||||||||||||||||||| | | |||| |||| ||| ||||||| | ||||| Sbjct 278 TTGACTTGGACCACACGCTTCTCCACT-CCGTTAGGGTT-CAATTTCTCTCCGATGCAGA 335 Query 345 GAAGTATCTAATCGAAGAAGCGGGTTCAGCAACAAGGGATGATTTATGGAAGATCAAAGC 404 |||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |||| Sbjct 336 GAAGTATCTAATCGAAGAAGCGGGTTCAACAACAAGGGAAGATCTATGGAAGATGAAAGT 395 Query 405 CGTAGGAGATCCCATGG--A-A----TT---T--TTGACAAAGCTACGACCTTTTCTTCG 452 | |||||||||||| | | || | |||||||||||||| ||||||||||| Sbjct 396 CAAAGGAGATCCCATACCCATAACCATTGAATACTTGACAAAGCTACGGCCTTTTCTTCG 455 Query 453 CGACTTCTTGAAAGAAGCCAACGAGTTTTTCACCATGTATGTTTACACTAAGGGTAGTCG 512 ||| |||||||||||||||||| || | ||||| |||||||||||||| ||||||| ||| Sbjct 456 CGAGTTCTTGAAAGAAGCCAACAAGCTGTTCACGATGTATGTTTACACAAAGGGTACTCG 515 Query 513 T-GTATACGCTAAA-CAAGTCTTGGAGCTGATTGATCCAAAGAAACTTTATTTTGGAG-A 569 || ||||||||| | | | ||| |||||||||||||||||||||| |||||||| | | Sbjct 516 CCGT-TACGCTAAAGCCATT-TTGAAGCTGATTGATCCAAAGAAACTCTATTTTGG-GCA 572 Query 570 TAGAGTGATAACAA-AAACCGAGAGTCCTCATATGAAGACACTTGATTTCGTTTTGGCTG 628 |||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||||||| Sbjct 573 TAGAGTGATAACAAGAAAT-GAGAGTCCTCATACGAAGACACTTGATTTGGTTTTGGCTG 631 Query 629 AGGAGCGTGGGGTGGTGATTGTGGATGATACGCGTAACGTTTGGCCTGATCACAAGAGTA 688 | || ||||| |||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 632 ATGAACGTGGAGTGGTGATTGTGGATGATACGCGTAATATTTGGCCCAATCACAAGAGTA 691 Query 689 ACCTAGTGGAT-ATAAGCAAGTACA-GCTATTTCAGACTCAAAGGCCAAGACTCAA-TGC 745 ||||||||| | || ||||||||| | ||||||||| || |||||| || | || | | Sbjct 692 ACCTAGTGG-TGATTGGCAAGTACAAG-TATTTCAGATTCGAAGGCCGAGTGTTAAAT-C 748 Query 746 CTTACTCTGAGGAGAAGAC-A--GACGAGAGTGAAAGCGAA-GGTGGATTGGCGAATGTT 801 || |||||||||| ||||| | ||||||||||||| | || ||||||||||| |||||| Sbjct 749 CTCACTCTGAGGAAAAGACGACAGACGAGAGTGAAAAC-AACGGTGGATTGGCCAATGTT 807 Query 802 TTGAAACTACTCAAGGAAGTTCACCA-AAGATTCTTCAGAGTCGAGGAAGAA-TTGGAGT 859 |||||| |||||||||||||||||| || ||||||||| ||||||||||| ||| ||| Sbjct 808 TTGAAATTACTCAAGGAAGTTCACCGTAA-ATTCTTCAGGGTCGAGGAAGAGGTTG-AGT 865 Query 860 CGA-AGGACGTT 870 | | |||||||| Sbjct 866 C-ACAGGACGTT 876 > Ahg930830 jgi|Araly1|930830|scaffold_303287.1 Length=904 Score = 802 bits (434), Expect = 0.0 Identities = 721/854 (84%), Gaps = 41/854 (5%) Strand=Plus/Plus Query 96 TAGTAGTTGTGGTCACTGGTAC-ATCTGTCACGGAATCTGCATCGGCTGCAAATCGACT- 153 |||| ||||||||||||||||| | | ||| ||| ||||||||||||||||||| | | Sbjct 45 TAGTTGTTGTGGTCACTGGTACGGT-TTTCATGGAGTCTGCATCGGCTGCAAATC-AATA 102 Query 154 GTGaaaaaaaGCCAA-GGCCGAGCATTCGATTATATTTTCGACGGTTTACAACTAAGCCA 212 ||| | ||||||||| || |||||||| |||||||||||| |||||||||| |||||||| Sbjct 103 GTGCACAAAAGCCAATGG-CGAGCATTTGATTATATTTTCAACGGTTTACAGCTAAGCCA 161 Query 213 CGAAGCTGTGGCGTTAACCAAGTGCTTTACAACGAAATTA-TCTTGTCTCAACGAGAAGA 271 |||||||||||| |||||||||| | ||||| |||| | ||||||||||||||||||| Sbjct 162 CGAAGCTGTGGCATTAACCAAGTCCCGCACAAC-AAATAACTCTTGTCTCAACGAGAAGA 220 Query 272 AGCTTCACCTTGTACTTGACTTGGACCACACGCTTCTCCATACTG-TTATGGTTCCAAGT 330 | ||||||||||| |||||||||||||||||||||||||| | || | ||||||| || Sbjct 221 AACTTCACCTTGTCCTTGACTTGGACCACACGCTTCTCCACA-TGAAAAAGGTTCCATGT 279 Query 331 CTCTCCCAAGCAGAGAAGTATCTAATCGAAGAAGCGGGTTCAGCAACAAGGGATGATTTA 390 ||||||| |||||||| |||||||||| ||||||| |||||| ||||||||| ||| || Sbjct 280 CTCTCCCGAGCAGAGATGTATCTAATCCAAGAAGCATGTTCAGTAACAAGGGAAGATATA 339 Query 391 TGGAAGATCAAAG-C-CGTAGGAGATCCCATGGAAT-TTTTGACAAAGCTACGACCTTTT 447 ||||| || ||| | | ||||||||||||| | || |||| |||||||||||| ||| Sbjct 340 TGGAAAAT--AAGACTCCTAGGAGATCCCATAG-ATCGCTTGATAAAGCTACGACCCTTT 396 Query 448 CTTCGCGACTTCTTGAAAGAAGCCAACGAGTTTTTCACCATGTATGTTTACACTAAGGGT 507 ||||||||||||||||||||||||| ||| | ||||| |||||||||||||| |||||| Sbjct 397 GTTCGCGACTTCTTGAAAGAAGCCAATGAGATGTTCACAATGTATGTTTACACAAAGGGT 456 Query 508 AGTCGTGTATACGCTAAA-CAAGTCTTGGAGCTGATTGATCCAAAGAAACTTTATTTTGG 566 | ||| |||||||||| | |||||||||||||||||||| || | ||| |||||||| Sbjct 457 ACTCGCAAATACGCTAAAGC-TGTCTTGGAGCTGATTGATCCTAATAGACTCTATTTTGG 515 Query 567 AGATAGAGTGATAACAAAA-ACCGAGAGTCCTCAT-ATGAAGACACTTGATTTCGTTTTG 624 ||||||||||| |||||| | ||||||||||||| | |||||| |||||||| |||||| Sbjct 516 TGATAGAGTGATTACAAAAGA-CGAGAGTCCTCATCA-GAAGACGCTTGATTTGGTTTTG 573 Query 625 GCTGAGGAGCGTGGGGTGGTGATTGTGGATGATACGCGTAACGTTTGGCCTGATCACAAG 684 |||||||||||||||||||||||||| ||||||| |||| | ||||||| |||||||| Sbjct 574 GCTGAGGAGCGTGGGGTGGTGATTGTTGATGATAGGCGTGATATTTGGCCCCATCACAAG 633 Query 685 AGTAACCTAGTGGATATAAGCAAGTACA-GCTATTTCAGACTCAAAGGCCAAGACTCAA- 742 ||||||||| | || || |||||||||| | ||||||||| ||| ||||||| |||| Sbjct 634 AGTAACCTAATAGAGATTAGCAAGTACAAG-TATTTCAGAGTCAGTGGCCAAGGGTCAAA 692 Query 743 TGCCTTACTCTGAGGAGAAGACAGACGAGAGTGAAAGCGAAGGTGGATTGGCGAATGTTT 802 | | |||||||||| ||||||||||||||||||||| || ||||||||||||||||||| Sbjct 693 TTC-TTACTCTGAGAAGAAGACAGACGAGAGTGAAAAAGACGGTGGATTGGCGAATGTTT 751 Query 803 TGAAACTACTCAAGGAAGTTCACCAAAGATTCTTCA-GAGTCGAGGA--AGAAT-TGGAG 858 | ||| ||||||| |||||||| |||||||||| | |||||||| |||| ||||| Sbjct 752 TAAAATTACTCAAACAAGTTCACTGTAGATTCTTCATG-GTCGAGGAGGAGAAGCTGGAG 810 Query 859 TCGAA-GGACGTTAGGTCGCTGCTTCAAGAAATA------GACTTTGA-ACTCAACGTAG 910 || || |||||| ||||||||||| |||||||| |||||||| || |||| || Sbjct 811 TC-AATGGACGTCAGGTCGCTGCTAAAAGAAATATATATAGACTTTGATAC-CAACCAAG 868 Query 911 AATCTGTAGAATGA 924 |||||||||||||| Sbjct 869 AATCTGTAGAATGA 882 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34272502383 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5