BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19610.1
Length=1982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479477 jgi|Araly1|479477|fgenesh2_kg.3__2178__AT3G19610.1 3097 0.0
> Ahg479477 jgi|Araly1|479477|fgenesh2_kg.3__2178__AT3G19610.1
Length=1964
Score = 3097 bits (1677), Expect = 0.0
Identities = 1875/1970 (95%), Gaps = 15/1970 (1%)
Strand=Plus/Plus
Query 22 TAAACACATTAGAC-TCCACCAATCTTGTTCTTGTCTGTATGCAACAGATTGAGAAACGT 80
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAACACATTAG-CTTCCACCGATCTTGTTCTTGTCTGTATGCAACAGATTGAGAAACGT 59
Query 81 AGCCTTCTCTGTTCGTTTCTCTCTGTGTTTCATCTGATACATTTACAAGCATTGCTTCTT 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 AGCCTTCTCTGTTCGTTTCTCTCTGTGTTTCATCTGATACATTTACAAGCATTGCTT-TT 118
Query 141 G-AAATGGCAGAATTAAGATCAGGTGTTCTTTTCAAGCTTCTAGAAGAAATGGGAGTCGG 199
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 GGAAATGGCAGAACTAAGATCAGGTGTTCTTTTCAAGCTTCTAGAAGAAATGGGAGTCGG 178
Query 200 GAAAGTGCGAAGAGACGTCGATCACAGACCCGTTTTGCTGCAAATAAGATGCATAATCCC 259
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 179 GAAAGTGCGAAGAGACGTCGATCACAGACCGGTTTTGCTGCAGATAAGAAGCATAATCCC 238
Query 260 TGTGTTAGCAGCTGGAGGGTTATGGCCAAACAAAGGTTTCTTCTTGAGGATAACAGATTC 319
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TGTGTTAGCAGCTGGAGGATTATGGCCAAACAAAGGTTTCTTCTTGAGGATAACAGATTC 298
Query 320 GACACATTCAATATATGTCTCATTGCCACGAGAAGAGAACGATCTTGTTCTCTACGACAA 379
||||| ||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 299 AACACACTCAATGTATGTATCATTGCCGCGAGAAGAGAACGATCTTGTTCTTTACGACAA 358
Query 380 GTTACAAATCGGGCAATTGATATTCGTCGAGAAGCTTGAATTTGCTTATCCAGTTCCCAT 439
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 359 GTTACAAATCGGGCAATTGATATTCATCGAGAAGCTTGAATTTGCTTATCCAGTTCCTAT 418
Query 440 GATCAAAGGCATTAGACCAACACCTGGCCGAAGGGCTTGCACCGGTGATCCAATCGATCT 499
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 419 GATCAAAGGCATTAGACCAACTCCAGGCCGAAGGGCTTGCACCGGTGATCCAATCGATCT 478
Query 500 AATCCCTAAAGAACGGATCGAAAAGTTCTGTGTCGGTCTATCGGATATCG-AAGAAAACT 558
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 479 AATCCCTAAAGAACGGATCGAAAAGTTCTGTGTCGGTCTATCGGATA-CGGAAGAAAACT 537
Query 559 ACGATCACCAAGTGAAGAAGCCAAGAAGAACTAGATGGAATAACTCAAGCGTCTCTGAGT 618
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 538 ATGATCACCAAGTGAAGAAGCCAAGAAGAACGAGATGGAATAACTCAAGCGTCTCTGAGT 597
Query 619 TAAACTTTACAGATTTAGGGTTATCGAAAAATCTTTCGAGTGTTATGGAAGAAAAGGATG 678
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 598 TAAATTTTACAGATTTGGGGTTATCGAAAAACCTTTCGAGTGTTATGGAAGAAAAGGATG 657
Query 679 ATACAGAGTCAATGATTTCAAGTTGCTCTTCGTCTTTTTCTTCAGCAGCTAGGAGGAGAA 738
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||
Sbjct 658 ATACAGAGTCAATGATTTCGAGTTGCTCTTCGTCTTTTTCTTCAGTAGCTAGGAGAAGAA 717
Query 739 GCTGGATAGGCTC-GGCTGATAATAGGAAGAGAAGAGATTCATTAGATCCATCCATGATT 797
||||||||||||| || ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 718 GCTGGATAGGCTCAGG-TGATAATAGGAAGAGAAGAGAGTCGTTAGATCCATCCATGATT 776
Query 798 AAGAATCATGATCATGACACTAAACATGTTTCAAGAGCTCGAAGTTCTTCTGCTACTTCA 857
|||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 777 AAGAATCATGATCATGACACTAAACATGCTTCAATTGCTCGAAGTTCTTCCGCTACTTCA 836
Query 858 CCTTCTCTTTCTATCCGAAGCTATGGAGGGATAGAGGAGAAGTCAAGTAGTAGAACAAGA 917
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 837 CCTTCGCTGTCTATCCGAAGCTATGGAGGGATAGAGGAGAAATCAAGTAGTAGAACAAGA 896
Query 918 AGAAGAGATGTTGTGGTTTCACCATCTCCAAGATGGTCTAAAAGCTTAAGCTATGGAAGT 977
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AGAAGAGATGGTGTGGTTTCACCATCTCCAAGATGGTCTAAAAGCTTAAGCTATGGAAGT 956
Query 978 AGAAGTAATAAGAGTAAAAACCTTCTTCCACCTAAAAGCAATACCTTTGAATCCTCAGAT 1037
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 957 GGAAGTAATAAGAGTAAGAACCTTCTTCCACCTAAAAGCAATACCCTTGAATCCTCAGAT 1016
Query 1038 CCGATATCAAGGAAACGAAGCTGGACAGAGACAGAGATTCTCTGGGATTCACTTCCTCCA 1097
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TCGATATCGAGGAAAAGAAGCTGGACAGAGACAGAGATTCTCTGGGATTCACTTCCTCCA 1076
Query 1098 AAAGTTGTAAATCTCGGAAAGGAAATTCTGAGACAGAGAGATACGGCTATTAGAGCTGCC 1157
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1077 AAAGTTGTAAATCTCGGAAAGGAAATTCTGAGACAGAGAGATACGGCTATTCGAGCTGCA 1136
Query 1158 TCACAAGCTTTGTTAGAGGCTTCAGCTGCTGAAAGATTGCTCAAATGTCTAAGGTCATAC 1217
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TCCCAAGCTTTGTTAGAGGCTTCAGCTGCTGAAAGATTGCTCAAATGTCTAAGGTCATAC 1196
Query 1218 TCTGAGCTTTCAGACAGGAGAAACCAACATCAAGAAAATCAACAGCCACCAATCCAAGAT 1277
|| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1197 TCGGAGCTTTCGGACAGGAGAAACCAACATCAAGAAAATCAACAGCCACCAATTCAAGAT 1256
Query 1278 TTCTTGAGTTTCCAGGATGAGTTAAGCAAGAGCAGGCTCATCATTCAATCACTATCAACT 1337
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTCTTGAGTTTCCAAGCTGAGTTAAGCAAGAGCAGGCTCATCATTCAATCACTATCAACT 1316
Query 1338 GAAAAAACAGAGCACTGCAACGCAAACATAGTCAAAACAGGAGATGAGAGACGCGAAAAG 1397
|||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1317 GAAAAAACAGAGCATTCCAACTCCAACATAGTCAAAACAGGAGATGAGAGACGCGAAAAG 1376
Query 1398 GCGACTCAGTGGATCAAATCAGCATTGGCTACCGATCTCAAACTGGTTTCTT-TATCCGC 1456
|||||||||||||||||||||||||| |||||||||||| |||||||||||| || ||||
Sbjct 1377 GCGACTCAGTGGATCAAATCAGCATTAGCTACCGATCTCCAACTGGTTTCTTCTA-CCGC 1435
Query 1457 AAGCAAGCCTACACAGAGCCCCGGGAGAAAGGGTCTTACCCTAATTGCTCAAGAAAGTGA 1516
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1436 AAGTAAGCCTACACAGAGCCCCGGGAGAAAGGGTCTTACCCTAATTGCTCAAGAAATTGA 1495
Query 1517 TAACCGTGAAGGTAACGCAAGCGAAAGCAACTCAAGATTGGGAGAGATAAAGGAGAGGTT 1576
||||||||||| |||| ||||||||||| |||| |||||||||||| ||||||||||||
Sbjct 1496 TAACCGTGAAGATAACACAAGCGAAAGCGACTCGGGATTGGGAGAGAGAAAGGAGAGGTT 1555
Query 1577 AAGCAGAGCATCGAGCGAACTCAGAAACTGGCTTAAGGAAGAAGGAAGAAGTTGGTACCT 1636
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1556 AAGCAGAGCATCGAGCGAACTTAGAAACTGGCTTAAGGAAGAAGGAAGAAGTTGGTATCT 1615
Query 1637 AAACCGTGTTGAGAAGTATTTAGATGAGATCAGCAATGGAACAAAGTGGAGAGAGATGAG 1696
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1616 AAGCCGTGTTGAGAAGTATTTAGATGAGATCAGCAATGGAACAAAGTGGAGAGAAATGAG 1675
Query 1697 GAGTGAAGAAGTAGGGGAAACAATGTATCAGATAAAGCGAGTGAGTGATTGGTTAGACAC 1756
||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 1676 CAGTCAACAAGTAGGGGAAACGATGTATCAGATAAAACGAGTGAGTGATTGGTTAGACGC 1735
Query 1757 CATTGTTAAAGGAGAAGAAGATGAGGAAGAA-AAGA--TGGTGATGATGATGATGTCAGA 1813
||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||
Sbjct 1736 CATTGTTAAAGGAGAAGAAAATGAGGAAGAAGAAGAAATGGTGATGATGATGATGTCAGA 1795
Query 1814 GTCTGAAACAGAGGCTTGTGGTAGAGTGAGGAACAAGATTTATAGGATTCTTTTGAAACA 1873
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1796 GTTTGAAACAGAGGCTTGTGGTAGAGTGAGGAACAAGATTTATAGGATTCTCTTGAAACA 1855
Query 1874 TGTTGAGACAACTTCTTTGTTAAGTCATCAACGAAGTACCAGTCTCATGTCTCATCATCA 1933
||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| ||
Sbjct 1856 TGTTGAGACAACTTCTTTGTTAAGTCATCAACGTAGTACCAATCTCATGTCTAATCAACA 1915
Query 1934 ACAACAACAACA-CGAACAACACTTGTTCCAAAAGACAATGTCACTTTAG 1982
|||||||||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 1916 ACAACAACAACAAC-AACAACACTTGTTCCAAAAGACGATGTCACTTTAG 1964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74504519220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5