BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19620.1
Length=2346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318716 jgi|Araly1|318716|fgenesh1_pm.C_scaffold_3001732 2115 0.0
> Ahg318716 jgi|Araly1|318716|fgenesh1_pm.C_scaffold_3001732
Length=2598
Score = 2115 bits (1145), Expect = 0.0
Identities = 1307/1387 (94%), Gaps = 3/1387 (0%)
Strand=Plus/Plus
Query 950 AAG-CAGGTTTGAACATGAACTGTGGAGATTTTCTAGGTAAGTACACAGAGAATGCAGTG 1008
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AAGACACGTTTGAACATGAACTGTGGAGATTTTCTAGGTAAGTACACAGAGAATGCAGTG 975
Query 1009 AAGCTTAAGAAACTGAACGGATCAGATGTTGATGAAGCGCTGATTTACAACTACATTGTT 1068
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 976 AAGCTTAAAAAACTGAACGGATCAGAGGTTGATGAAGCGCTGATTTACAACTACATTGTT 1035
Query 1069 CTCATGAGGCTCGGATTCTTCGATGGAGATCCAAAGTCGCTTCCTTTTGGT-AATCTTGG 1127
|||||||||||||||||||| || ||||||||||| || ||||| |||||| || |||||
Sbjct 1036 CTCATGAGGCTCGGATTCTTTGACGGAGATCCAAAATCACTTCCCTTTGGTCAA-CTTGG 1094
Query 1128 TCCGTCTGATGTTTGCAGCAAGGATCATCAAATGCTTGCGTTAGAAGCCGCAAAACAGGG 1187
||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 1095 ACCGTCTGATGTCTGCAGCAAGGACCATCAAATGCTTGCGCTAGAAGCAGCAAAACAGGG 1154
Query 1188 GATTGTTCTGCTTGAGAACAGAGGAGATCTTCCGTTACCGAAGACCACGGTTAAGAAACT 1247
|||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 1155 GATTGTACTGCTTGAGAACAGAGGAGATCTTCCGTTATCGAAGACCGCGGTTAAGAAAAT 1214
Query 1248 TGCGGTTATAGGGCCAAATGCAAACGCTACAAAGGTCATGATTAGTAACTACGCAGGTGT 1307
|| |||||||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 1215 AGCAGTTATAGGGCCAAATGCAAATGCTACAAAGGTAATGATTAGTAACTATGCGGGTGT 1274
Query 1308 ACCCTGTAAGTACACAAGCCCTATACAAGGGCTGCAAAAGTATGTACCGGAAAAAATTGT 1367
|| |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct 1275 TCCTTGTAAGTACACAAGCCCTTTACAAGGGTTGCAAAAGTATGTACCGGAAAAGGTTGT 1334
Query 1368 TTACGAGCCAGGGTGTAAAGATGTCAAATGTGGTGACCAAACACTGATTTCAGCAGCGGT 1427
|||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1335 TTACGAACCGGGGTGTAAAGATGTCAAATGTGGTGAGCAAACACTAATTTCAGCAGCGGT 1394
Query 1428 CAAGGCGGTTTCAGAGGCTGATGTGACGGTTTTGGTGGTTGGATTGGATCAGACGGTAGA 1487
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1395 CAAGGCGGTTTCAGAGGCTGATGTGACAGTTTTGGTGGTTGGATTGGATCAGACGGTAGA 1454
Query 1488 GGCAGAGGGTCTTGACCGTGTTAACCTAACCCTTCCGGGTTATCAAGAAAAGCTGGTGAG 1547
|||||||||||||||||| || ||| |||||||||||||||| |||||||||||||||||
Sbjct 1455 GGCAGAGGGTCTTGACCGGGTAAACTTAACCCTTCCGGGTTACCAAGAAAAGCTGGTGAG 1514
Query 1548 AGATGTGGCAAATGCTGCAAAGAAAACTGTTGTTTTGGTCATAATGTCAGCCGGACCTAT 1607
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1515 AGATGTGGCTAATGCTGCAAAAAAAACTGTTGTGTTGGTCATAATGTCAGCCGGACCTAT 1574
Query 1608 AGATATCTCATTCGCCAAGAATCTGAGCACGATTCGGGCTGTTTTATGGGTCGGATATCC 1667
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 1575 AGATATCTCATTCGCCAAGAATCTGAGCACGATTAGCGCGGTTTTATGGGTCGGATATCC 1634
Query 1668 TGGTGAAGCTGGAGGAGACGCTATAGCTCAAGTCATCTTTGGTGACTACAATCCTTCTGG 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 TGGTGAAGCTGGAGGAGACGCTATAGCTCAAGTCATCTTTGGTGACTACAATCCTTCTGG 1694
Query 1728 GAGACTACCAGAGACATGGTACCCACAAGAGTTTGCGGATAAGGTTGCAATGACAGATAT 1787
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||
Sbjct 1695 GAGACTACCAGAGACATGGTACTCACAAGAGTTTGCGGATAAGGTTGCAATGACGGACAT 1754
Query 1788 GAACATGAGACCTAACTCAACCTCTGGTTTCCCTGGAAGATCTTACAGATTCTACACAGG 1847
||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1755 GAACATGCGGCCTAACTCAACCTCTGGTTTTCCTGGAAGATCTTACAGATTCTACACAGG 1814
Query 1848 GAAACCGATTTACAAATTCGGATACGGGCTTAGCTACTCTTCTTTCTCGACTTTTGTTCT 1907
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1815 GAAACCGATTTACAAATTCGGATACGGGCTTAGCTACTCTTCTTTCTCGACTTTCGTTCT 1874
Query 1908 CTCAGCTCCATCGATCATACACATCAAAACCAATCCAATCATGAACCTAAACAAGACAAC 1967
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1875 CTCAGCTCCATCGATCATACACATCAAAACCAATCCAATCTTGAACCTAAACAAAACAAC 1934
Query 1968 CTCTGTGGATATCTCCACAGTAAATTGCCACGATCTCAAGATCCGGATAGTTATCGGGGT 2027
|||| | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1935 CTCTATCGATATCTCCACCGTAAATTGCCACGATCTCAAGATCCGGATCGTTATCGGGGT 1994
Query 2028 CAAGAACCACGGGCTACGGTCTGGTAGCCACGTGGTGCTCGTGTTCTGGAAACCACCAAA 2087
|||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1995 CAAGAACCGCGGGCAACGGTCTGGAAGCCACGTGGTGCTCGTGTTCTGGAAACCGCCTAA 2054
Query 2088 GTGTTCAAAGTCTCTGGTGGGTGGTGGCGTGCCACTGACGCAACTGGTAGGGTTTGAGAG 2147
||||||||| |||||||||||| ||||||||||| ||||||| ||||||| ||||||||
Sbjct 2055 GTGTTCAAAAACTCTGGTGGGTGCTGGCGTGCCACAGACGCAATTGGTAGGATTTGAGAG 2114
Query 2148 AGTAGAAGTTGGGAGAAGCATGACAGAGAAATTTACCGTTGATTTTGATGTCTGCAAAGC 2207
||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 2115 AGTAGAAGTTGGGAGAAGCATGACAGAGAAAGTTATCGTTGAGTTTGATGTCTGCAAAGC 2174
Query 2208 ACTTAGCCTTGTGGATACTCACGGGAAAAGAAAACTAGTCACCGGACACCACAAGCTTGT 2267
|||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 2175 ACTTAGCCTTGTGGATACTCACGGTAAAAGGAAACTAGTCACCGGACACCACACGCTTGT 2234
Query 2268 TATTGGATCCAACAGTGATCAACAAATCTATCATCACCTCAACGTTAGATTGGCCGGAGA 2327
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2235 TATTGGTTCTAACAGTGATCAACAAATCTATCATCATCTCAACGTTAGATTGGCCGGAGA 2294
Query 2328 TTCAACG 2334
|||||||
Sbjct 2295 TTCAACG 2301
Score = 1380 bits (747), Expect = 0.0
Identities = 868/927 (94%), Gaps = 6/927 (1%)
Strand=Plus/Plus
Query 1 ATGAGTATTA-GAAGATTTGTGCGTCTCTCTCTGCTAATCA-TAGCTCTAGTTTCATCAC 58
|||||| || ||||||||||| || ||||||||||||| | |||||||||||||||||
Sbjct 1 ATGAGT-GTAGGAAGATTTGTGAGTGTCTCTCTGCTAAT-AGCAGCTCTAGTTTCATCAC 58
Query 59 TTTGCGAGTCTCAAAAGAACTTTGCGTGTGACA-TAAGTGCCCCAGCGACGGCTAAGTAT 117
| ||||||||||||||||||||||||||||||| || || ||| |||||||||||||||
Sbjct 59 TGTGCGAGTCTCAAAAGAACTTTGCGTGTGACAGGAA-TGACCCTGCGACGGCTAAGTAT 117
Query 118 GGTTTCTGCAACGTCTCATTGTCGTATGAAGCACGTGCCAAAGATTTGGTCTCACGTCTC 177
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 GGTTTCTGCAACGTCTCGTTGTCGTATGAAGCCCGTGCCAAAGATTTGGTCTCACGTCTC 177
Query 178 TCCCTTAAGGAAAAAGTCCAGCAACTCGTAAACAAAGCCACAGGAGTTCCAAGGCTCGGT 237
|||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct 178 TCCCTTAAGGAAAAGGTCCCGCAACTCGTAAACAAAGCCACGGGAGTTTCAAGGCTCGGT 237
Query 238 GTTCCGCCGTACGAGTGGTGGTCGGAAGCTCTCCATGGCGTCTCCGACGTTGGACCAGGG 297
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 238 GTTCCTCCGTACGAGTGGTGGTCAGAAGCTCTCCACGGCGTCTCCGACGTTGGACCAGGG 297
Query 298 GTGCATTTCAACGGGACGGTGCCTGGAGCGACGAGTTTCCCGGCGACAATATTAACGGCG 357
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 298 GTGCGTTTCAACGGGACGGTGCCTGGAGCGACGAGTTTCCCGGCGACGATATTAACGGCA 357
Query 358 GCTAGCTTTAACACATCGTTGTGGCTAAAAATGGGAGAAGTGGTATCGACGGAGGCTCGA 417
|| ||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct 358 GCGAGCTTTAACACCTCGTTGTGGTTAAAAATGGGAGAAGTGGTTTCTACGGAGGCTCGA 417
Query 418 GCGATGCACAACGTAGGACTAGCTGGACTCACCTATTGGAGTCCCAACGTTAACGTCTTC 477
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 418 GCGATGCACAACGTAGGACTAGCTGGACTTACCTATTGGAGTCCCAACGTTAACGTCTTT 477
Query 478 AGAGATCCGAGATGGGGTCGAGGCCAAGAGACACCAGGAGAGGATCCTCTCGTTGTTTCG 537
|||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 478 AGAGATCCAAGGTGGGGTCGTGGCCAAGAGACACCAGGAGAGGACCCTCTCGTTGTTTCA 537
Query 538 AAGTACGCTGTGAACTACGTTAAGGGCTTACAAGACGTTCACGACGCCGGTAAATCACGG 597
|||||||| ||||| ||||| |||||||||||||||||||| ||||| || |||||||||
Sbjct 538 AAGTACGCCGTGAATTACGTCAAGGGCTTACAAGACGTTCAGGACGCAGGAAAATCACGG 597
Query 598 CGGCTAAAGGTTTCAAGCTGTTGCAAGCATTACACAGCTTATGATCTTGATAACTGGAAA 657
||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 598 CGGCTTAAGGTTTCGAGTTGTTGCAAGCATTACACTGCTTACGATCTTGATAACTGGAAA 657
Query 658 GGCATCGATAGATTCCACTTTGATGCCAAGGTAACGAAGCAAGACTTGGAAGACACGTAT 717
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 658 GGCATCGATAGATTCCACTTCGACGCCAAGGTAACGAAGCAAGACTTGGAAGACACGTAT 717
Query 718 CAGACGCCATTCAAGAGTTGTGTAGAGGAAGGAGATGTGAGCAGCGTAATGTGTTCTTAC 777
||| ||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 718 CAGCCGCCATTCAAGAGCTGCGTAGAGGAAGGAGATGTGAGCAGTGTAATGTGTTCTTAC 777
Query 778 AACAGAGTTAATGGTATCCCAACTTGTGCAGACCCTAATCTTCTTCGTGGAGTTATCCGT 837
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AACAGAGTTAATGGCATCCCAACTTGTGCAGACCCTAATCTTCTTCGTGGAGTTATCCGT 837
Query 838 GGCCAATGGCGTCTTGACGGGTACATAGTTTCGGATTGTGATTCCATCCAGGTCTATTTC 897
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 838 GGCCAATGGCGTCTTGACGGGTACATCGTTTCGGATTGTGATTCTATCCAGGTCTATTTC 897
Query 898 AACGACATTCATTACACCAAGACACGT 924
||||||||||||||||||||||||||
Sbjct 898 GACGACATTCATTACACCAAGACACGT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88369368400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5