BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19630.1
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318717 jgi|Araly1|318717|fgenesh1_pm.C_scaffold_3001733 972 0.0
> Ahg318717 jgi|Araly1|318717|fgenesh1_pm.C_scaffold_3001733
Length=1149
Score = 972 bits (526), Expect = 0.0
Identities = 592/624 (95%), Gaps = 3/624 (0%)
Strand=Plus/Plus
Query 566 TCATGGGAATGGGAGAACCTTTAAATAACTACAATGCTGTTGTTGAAGCTGTTCGTGTCA 625
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 528 TCA-GGGAATGGGAGAACCTTTAAATAACTACAATGCTGTTGTTGAAGCTGTCCGCGTCA 586
Query 626 TGTTAAACCAACCATTTCAGCTGTCGCCCAAAAGAATTACCATATCAACTGTCGGAATTG 685
||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 587 TGTTAAAACAGCCTTTTCAGCTGTCACCCAAAAGAATTACCATATCAACTGTCGGAATTG 646
Query 686 TTCACGCAATTAACAAGCTACACAATGATCTACCCGGTGTAAGTTTAGCAGTATCCCTCC 745
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 647 TTCACGCAATTAGCAAGCTACACAATGATCTACCAGGTGTAAGTTTAGCAGTATCTCTTC 706
Query 746 ATGCACCAGTTCAAGAAATCCGCTGCCAGATCATGCCAGCAGCTAGAGCCTTTCCT-TTA 804
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 707 ACGCCCCAGTTCAAGAAATCCGCTGCCAGATCATGCCAGCAGCTAGAGCCTTTCCTCTT- 765
Query 805 CAAAAGCTTATGGATGCACTTCAAACTTTCCAAAAGAACAGTCAACAAAAGATCTTCATT 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 CAAAAGCTTATGGATGCACTTCAAACTTTCCAAAAGAACAGTCAACAAAAGATCTTCATT 825
Query 865 GAGTACATAATGCTTGATGGAGTAAATGATCAAGAGCAGCACGCTCATCTACTAGGCGAA 924
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 826 GAGTACATAATGCTTGATGGAGTAAATGATCAAGAGCAGCACGCTCATCTACTTGGCGAA 885
Query 925 TTGCTAAAGACATTTCAAGTGGTCATAAATTTGATACCATTTAATCCAATTGGATCCACA 984
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 886 TTGCTAAAGACATTTCAAGTGGTCATAAATTTGATACCATTTAACCCAATTGGGTCCACA 945
Query 985 AGCCAATTCGAAACAAGCAGCATACAAGGCGTGTCAAGATTCCAGAAAATCCTGAGGGAA 1044
||||||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 946 AGCCAATTCAAAACAAGCAGCATACAAAGCGTATCAAGTTTCCAGAAAATCCTGAGGGAA 1005
Query 1045 ACATACAAGATCCGGACTACAATTCGCAAAGAAATGGGTCAGGATATTAGCGGCGCTTGC 1104
|| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1006 ACGTACAAGATCCGAACCACAATTCGCAAAGAAATGGGTCAGGATATTAGTGGCGCTTGC 1065
Query 1105 GGTCAGCTAGTGGTGAACCAACCAGACATCAAAAAGACTCCTGGAACTGTGGAACTTAGA 1164
||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |||
Sbjct 1066 GGTCAGCTAGTCGTGAACCAACCAGACAGCAAAAAGATTCCTGGAACTGTGGAACTCAGA 1125
Query 1165 GACATAGAAGATCTGCTTCTCTAA 1188
||||| |||||||||| |||||||
Sbjct 1126 GACATTGAAGATCTGCATCTCTAA 1149
Score = 826 bits (447), Expect = 0.0
Identities = 483/501 (96%), Gaps = 0/501 (0%)
Strand=Plus/Plus
Query 70 ATGAAGTTGAAATCGGTGTTCGATGCTTCGGAAATCAAATCGGAATTTGAATCAGCGGGA 129
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTGAAATCGGTGTTCGACGCTTCGGAAATCAAATCGGAATTTGAATCAGCGGGA 60
Query 130 ATAAACCCTAAATTCGCGATTCAAATCTGGAAGTATGTAATTCAGAATCCTGATTGCGTT 189
||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 61 ATAAACCCTAATTTTGCGATTCCAATCTGGAAGTATGTAATTCAAAATCCTGATTGTGTT 120
Query 190 TGGGACGAGATTCCTTCATTGCCTTCCGCTGCATACTCTCTTCTCCATTCCAAGTTCAAG 249
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 121 TGGGACGAGATTCCTTCATTGCCTTCTGCTGCATACTCTCTCCTCCATTCCAAGTTCAAG 180
Query 250 ACTCTTACTTCGTCTCTTCACTCGCTATTTCATTCCTCCGATGGCACCACCTCAAAGCTT 309
||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 181 ACTCTTACTTCGTCTCTTCACTCGCTATTCCATTCCTCAGATGGCACAACCTCAAAACTC 240
Query 310 CTCATCAAGCTCCAGAATGGAGCTTTTGTGGAAGCTGTGGTAATGAGATACGATACTCGG 369
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 241 CTCATCAAGCTCCAGAATGGAGCTTTTGTGGAAGCTGTGGTAATGCGATATGATACTCGG 300
Query 370 TTGGGGATGTTAGGAGGGAAACCACGTCCTGGAGGTATAAGATCTACGTTATGTATTTCA 429
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGGGGATATTAGGAGGGAAACCACGTCCTGGAGGTATAAGATCTACGTTATGTATTTCA 360
Query 430 TCTCAGGTTGGTTGTAAGATGGGTTGCACATTCTGTGCTACTGGTACCATGGGATTTAAA 489
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TCTCAGGTTGGTTGTAAGATGGGTTGTACATTCTGTGCTACTGGTACCATGGGATTTAAA 420
Query 490 AGCAATTTAACATCTGGAGAAATTGTGGAGCAGCTTGTTCACGCCTCTCGCATTGCTGAT 549
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 AGCAATTTAACATCTGGAGAAATTGTGGAGCAGCTTGTTCACGCCTCTCGCATAGCTGAT 480
Query 550 ATACGCAACATCGTTTTCATG 570
|||||||||||||||||||||
Sbjct 481 ATACGCAACATCGTTTTCATG 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55268945495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5