BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G19640.1
Length=1700
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479481 jgi|Araly1|479481|fgenesh2_kg.3__2182__AT3G19640.1 2392 0.0
> Ahg479481 jgi|Araly1|479481|fgenesh2_kg.3__2182__AT3G19640.1
Length=1579
Score = 2392 bits (1295), Expect = 0.0
Identities = 1493/1587 (94%), Gaps = 19/1587 (1%)
Strand=Plus/Plus
Query 17 TCTCTCTGATCACAACAATCATAA--GCGATGAGA---GGAGCTAGACCCGATGAATTCA 71
|||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||
Sbjct 1 TCTCTCTGATCACAACAATCGTAAGCGCGATGAGAGGCGGAGCTAGAGCCGATGAATTCA 60
Query 72 ATTTTAGTACGAATCCATCAACGCCAAACACTGGTCAGCCGACACCGACGTACCCCGCCG 131
|||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 ATTTCAATACGAATCCATCAACGCCAAACACTGGTCAGCCGACACCGATGTACCCCGCCG 120
Query 132 GTGTTGGCGGCGGCGGCGGTGGAAGGAAAAAAGGCGTTGGCGTGAGGACGTGGTTGGTAC 191
||||| | | || ||||| ||| |||| |||||||||||||||||| ||||||||||||
Sbjct 121 GTGTT-G-TG-GGTGGCGGCGGACGGAAGAAAGGCGTTGGCGTGAGGTCGTGGTTGGTAC 177
Query 192 TTAACTCGTCAGGGCAA-TCGGAGCCGAAGGAAGAAGGGAAACACTCCATCATGCGGCGA 250
| ||||||||||| || ||||| | |||||||||||||||||||||||||||||||||
Sbjct 178 TCGACTCGTCAGGG-AAGTCGGATCTAAAGGAAGAAGGGAAACACTCCATCATGCGGCGA 236
Query 251 ACGGGATTACCGGCGCGTGATCTTAGGATTCTCGATCCACTGTTGTCGTATCCATCTACT 310
|||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 237 ACGGGATTGCCGGCGAGAGATCTTCGGATTCTCGATCCACTGTTGTCGTATCCATCTACT 296
Query 311 GTTTTAGGTAGAGAGAGAGCGATTGTCATCAATTTGGAGCATATCAAGGCAATCATCACT 370
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTTTTAGGGAGAGAGAGAGCGATTGTCATCAATTTGGAGCATATCAAGGCAATCATCACC 356
Query 371 GCTCAAGAAGTTTTGTTGCTTAATTCCAAGGATCCTTCGGTCTCACCCTTTATTGATGAG 430
||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 357 GCTCAAGAAGTGTTGTTGCTTAATTCCAAGGATCCTTCCGTGTCACCCTTTATCGATGAG 416
Query 431 TTGCAGAGGCGGATTCTCTGTCACCATCACGCCACTAAACCTCAGGAGGAGCAGAACTCT 490
|||||||||||||||||||||| ||||||||||||||| ||||||||||| || || |||
Sbjct 417 TTGCAGAGGCGGATTCTCTGTCGCCATCACGCCACTAACCCTCAGGAGGAACATAAATCT 476
Query 491 GGGGGAGAGCCTCATACGAGGGTAGATCCTGCCCAAGGAGAAGCTGGAACGGAACAATCT 550
| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 477 GAGGGAGAGCCTCATACGAGGACAGATCCTGCCCAAGGAGAAGCTGGAACGCCACAATCA 536
Query 551 TCTGGGGATCAAGGGAGTGAAGCCAAGAAGGATGCGAAGCAAAGTCTTGAGAATCAAGAT 610
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 537 TCTGGGGATCAAGGGAGTGAAGCCAAGAAGGATGCCAAGCAAAGTCTTGAGAATCAAGAT 596
Query 611 GGATCG-AAGGTTCTTCCATTTGAGTTTGTTGCTCTGGAAGCCTGTCTTGAAGCTGCATC 669
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GGAT-GTAAGGTTCTTCCATTTGAGTTTGTTGCTCTGGAAGCCTGTCTTGAAGCTGCATC 655
Query 670 AAGCAGTTTGGAACATGAGGCCTTAAGATTGGAGTTAGAGGCTCATCCAGCCCTGGACAA 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AAGCAGTTTGGAACATGAGGCCTTAAGATTGGAGTTAGAGGCTCATCCAGCCCTGGACAA 715
Query 730 GCTTACTTCCAAGATCAGTACCCTTAATTTGGAGCGGGTTCGACAGATTAAAAGCAGGCT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GCTTACTTCCAAGATCAGTACCCTTAATTTGGAGCGGGTTCGACAGATTAAAAGCAGGCT 775
Query 790 GGTTGCAATAACTGGACGTGTTCAGAAGGTGAGGGATGAGCTAGAACATCTGCTAGACGA 849
|||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 776 GGTTGCAATAACTGGACGTGTTCAGAAGGTTAGGGACGAGTTAGAACATCTGCTAGACGA 835
Query 850 TGATGAAGATATGGCTGAGATGTATCTTACAGAGAAGTTAGCTCAGAAACTTGAGGATTC 909
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 836 TGATGAAGATATGGCTGAGATGTATCTTACGGAGAAGTTAGCTCAGAAACTTGAGGATTC 895
Query 910 GTCAAATTCCTCTATGAATGAGAGTGATACCTTCGAGGTTGATCTTCCTCAAGGAGATGA 969
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 896 GTCAAATTCTTCTATGAATGAGAATGATACCTTCGAGGTTGATCTTCCTCAAGGAGACGA 955
Query 970 GGATGACAGGCTTCCTCCCGAATTTGCATCAGA-GGCTAACAGAGATGGAAGGTATCTTC 1028
|||||||||||||||||||||||||||||| | |||||||||||||| ||| ||||| |
Sbjct 956 GGATGACAGGCTTCCTCCCGAATTTGCATC-GTTGGCTAACAGAGATGAAAGATATCTAC 1014
Query 1029 AAGCAAATGATGCTCACGAGCTTCTTATGAGTACTCAAAGTGCACTTAGCAGAAATAGCC 1088
| | |||||||| |||| | |||||||||||| |||| ||||||||||||||||||||||
Sbjct 1015 ATGGAAATGATGATCACCATCTTCTTATGAGTGCTCACAGTGCACTTAGCAGAAATAGCC 1074
Query 1089 GTGGGACTCACACAAGCTCAACCCGGAGTGCCATGACCAACAAATTAGATGTGGAAGAGC 1148
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1075 GTGGGACTAATACAAGCTCAACCCGGAGTGCGATGACCAACAAATTAGATGTGGAAGAGC 1134
Query 1149 TTGAAATGCTTTTGGAAGCATATTTCGTGCAGATCGATGGTATACTGAACAAACTATCAA 1208
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1135 TTGAAATGCTTTTGGAAGCATATTTTGTGCAGATCGATGGTATACTGAACAAACTATCAA 1194
Query 1209 CACTAAGGGAATATGTGGATGACACGGAGGACTACATCAACATAATGCTAGATGACAAGC 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 CACTAAGGGAATATGTGGATGACACGGAGGACTACATCAACATAATGCTAGATGACAAGC 1254
Query 1269 AGAATCATCTTCTGCAGATGGGTGTGATGCTAACAACAGCTACTCTGGTGATGAGCGCCT 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AGAATCATCTTCTGCAGATGGGTGTGATGCTAACAACAGCTACTCTGGTGATGAGCGCCT 1314
Query 1329 TTATCGCAGTTGCTGGTGTATTTGGTATGAATAT-AACCATAGAGTTGTTCACGGATAAT 1387
|||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |
Sbjct 1315 TTATCGCAGTTGCTGGTGTATTTGGTATGAATATTAAG-ATAGAGTTGTTCAAGGATACT 1373
Query 1388 AAA-CATGGTCCAAGTAGATTCATTTGGACTGTGATTGGAGGTTCTATCGGCAGTATATG 1446
|| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1374 GAAGC-TGGTCCAAGTAGATTCATTTGGACTGTAATTGGAGGTTCTATCGGTAGTATATT 1432
Query 1447 CCTCTACGTTGGTGCCATCGGGTGGTGCAAGTACAAGCGCCTTCTTGAATGAGTCGACCA 1506
||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 CCTTTACGTAAGTGTCATCGGGTGGTGCAAGTACAAGCGCCTTCTTGAATGAGTCGACCA 1492
Query 1507 ACAACATATTGGGAGAGGAGAATAATGTCGCATTGCCACAAATCTATTTAAGCTAACAAG 1566
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 1493 ACAACATATTGGGAGAGGAGAATAATGTCGCTTTGCCACAAATCTATTTAATCTAACGAG 1552
Query 1567 ACTTTT-ATGTATATCCTTTGTTCTTG 1592
|||||| |||||||||||| |||||||
Sbjct 1553 ACTTTTTATGTATATCCTTCGTTCTTG 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63763070130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5